Wall clock time and date at job start Tue Mar 31 2020 05:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42906 * 109.46752 * 2 1 4 4 C 1.35903 * 116.99522 * 179.97438 * 3 2 1 5 5 C 1.38725 * 120.05861 * 359.72783 * 4 3 2 6 6 C 1.38145 * 119.94387 * 179.74053 * 5 4 3 7 7 C 1.38270 * 120.05493 * 0.50964 * 6 5 4 8 8 C 1.50696 * 119.94234 * 179.73878 * 7 6 5 9 9 H 1.09000 * 109.46611 * 160.02090 * 8 7 6 10 10 C 1.52991 * 109.47774 * 280.02415 * 8 7 6 11 11 N 1.46504 * 109.47080 * 40.02863 * 8 7 6 12 12 C 1.38112 * 119.99892 * 154.99406 * 11 8 7 13 13 N 1.32864 * 120.81390 * 359.97438 * 12 11 8 14 14 C 1.32127 * 121.19065 * 179.97438 * 13 12 11 15 15 N 1.31497 * 122.64724 * 0.02562 * 14 13 12 16 16 C 1.33204 * 120.68492 * 0.02562 * 15 14 13 17 17 C 1.40809 * 120.81056 * 179.71677 * 12 11 8 18 18 C 1.41173 * 134.69826 * 0.02946 * 17 12 11 19 19 N 1.30249 * 108.46988 * 179.97438 * 18 17 12 20 20 N 1.36311 * 134.61904 * 180.02562 * 16 15 14 21 21 C 1.46504 * 125.87088 * 359.97206 * 20 16 15 22 22 C 1.50710 * 109.46762 * 90.00272 * 21 20 16 23 23 H 1.08001 * 119.99991 * 359.97438 * 22 21 20 24 24 C 1.37879 * 119.99789 * 179.97438 * 22 21 20 25 25 N 1.31514 * 119.99360 * 180.02562 * 24 22 21 26 26 Si 1.86794 * 120.00251 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.47165 * 89.99772 * 26 24 22 28 28 H 1.48499 * 109.47116 * 210.00326 * 26 24 22 29 29 H 1.48505 * 109.46984 * 329.99825 * 26 24 22 30 30 C 1.38261 * 120.10772 * 359.76899 * 7 6 5 31 31 C 1.38138 * 120.06029 * 359.97438 * 30 7 6 32 32 H 1.09001 * 109.46801 * 59.99865 * 1 2 3 33 33 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47050 * 299.99753 * 1 2 3 35 35 H 1.08993 * 109.46955 * 120.00418 * 2 1 3 36 36 H 1.09000 * 109.47050 * 240.00247 * 2 1 3 37 37 H 1.08000 * 120.02603 * 359.97438 * 5 4 3 38 38 H 1.08003 * 119.97031 * 180.27907 * 6 5 4 39 39 H 1.08996 * 109.47545 * 179.97438 * 10 8 7 40 40 H 1.09005 * 109.47237 * 300.00629 * 10 8 7 41 41 H 1.09009 * 109.47219 * 60.00297 * 10 8 7 42 42 H 0.96998 * 120.00325 * 334.99653 * 11 8 7 43 43 H 1.07998 * 118.67532 * 180.02562 * 14 13 12 44 44 H 1.07998 * 125.76241 * 0.02562 * 18 17 12 45 45 H 1.08993 * 109.47238 * 209.99760 * 21 20 16 46 46 H 1.09001 * 109.47520 * 330.00461 * 21 20 16 47 47 H 0.97003 * 119.99503 * 179.97438 * 25 24 22 48 48 H 1.08006 * 119.96917 * 179.97438 * 30 7 6 49 49 H 1.07997 * 120.03023 * 179.97438 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1998 0.4261 0.0068 6 6 5.5690 0.6098 0.0019 7 6 6.0962 1.8880 0.0014 8 6 7.5902 2.0855 0.0021 9 1 7.8239 3.0904 -0.3495 10 6 8.1281 1.9042 1.4228 11 7 8.2133 1.1004 -0.8855 12 6 9.4414 1.3666 -1.4585 13 7 10.0717 2.5109 -1.2164 14 6 11.2470 2.7730 -1.7602 15 7 11.8600 1.9323 -2.5643 16 6 11.3086 0.7587 -2.8692 17 6 10.0586 0.4297 -2.3094 18 6 9.7169 -0.8543 -2.7866 19 7 10.6744 -1.2740 -3.5635 20 7 11.6767 -0.2991 -3.6461 21 6 12.9151 -0.4047 -4.4218 22 6 13.9880 -1.0350 -3.5717 23 1 13.7695 -1.3273 -2.5552 24 6 15.2487 -1.2386 -4.0916 25 7 16.1848 -1.7891 -3.3498 26 14 15.6270 -0.7324 -5.8494 27 1 16.1170 0.6693 -5.8664 28 1 16.6707 -1.6285 -6.4089 29 1 14.3939 -0.8358 -6.6705 30 6 5.2549 2.9852 0.0011 31 6 3.8851 2.8069 0.0006 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 1.8933 -0.5139 0.8899 36 1 1.8934 -0.5138 -0.8900 37 1 3.7885 -0.5725 0.0116 38 1 6.2281 -0.2458 0.0022 39 1 9.2087 2.0465 1.4231 40 1 7.6644 2.6371 2.0832 41 1 7.8944 0.8992 1.7743 42 1 7.7634 0.2613 -1.0707 43 1 11.7234 3.7158 -1.5353 44 1 8.8137 -1.3964 -2.5485 45 1 12.7404 -1.0220 -5.3029 46 1 13.2352 0.5899 -4.7325 47 1 17.0716 -1.9326 -3.7157 48 1 5.6692 3.9827 0.0011 49 1 3.2284 3.6643 0.0007 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065520290.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:42 Heat of formation + Delta-G solvation = 106.341128 kcal Electronic energy + Delta-G solvation = -31529.825036 eV Core-core repulsion = 27266.052980 eV Total energy + Delta-G solvation = -4263.772055 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.175 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.45852 -40.62932 -38.95387 -38.20402 -36.37524 -33.91438 -33.06339 -32.18408 -31.54877 -31.45407 -31.05509 -29.09590 -28.60386 -27.71003 -24.65509 -24.07665 -23.92448 -23.19542 -22.41480 -21.99410 -20.87010 -20.04056 -18.76609 -18.01555 -17.42486 -17.10458 -16.69990 -16.55507 -16.13483 -15.85703 -15.26068 -15.18130 -14.45206 -14.37270 -14.24865 -14.08214 -13.93652 -13.82568 -13.75038 -13.65201 -13.44294 -13.14074 -12.96954 -12.63371 -12.45694 -12.28678 -12.18174 -12.05051 -11.95214 -11.36669 -11.23727 -11.15494 -11.13544 -11.03419 -10.88836 -10.69868 -10.26804 -10.12993 -9.69141 -9.38054 -9.30594 -8.73333 -8.71410 -8.47663 -8.26488 -7.66502 -6.21639 -4.24107 0.96575 1.00774 1.27491 1.90123 2.75753 2.83795 2.98466 3.06435 3.21821 3.27416 3.29272 3.40778 4.26827 4.31987 4.32950 4.36956 4.41799 4.47941 4.54725 4.58950 4.68060 4.73544 4.90777 4.93264 4.97316 5.03862 5.09339 5.12220 5.17962 5.22933 5.27748 5.34026 5.44898 5.52751 5.59446 5.63825 5.66594 5.77386 5.87646 5.96385 6.09526 6.18414 6.31529 6.37954 6.50935 6.56429 6.86704 6.90846 7.00720 7.21607 7.31519 7.42742 7.81886 8.12725 8.31676 8.76154 8.81036 9.33255 10.91118 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.018339 B = 0.001788 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.455811 B =15652.063902 C =16493.333202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 O -0.317 6.317 4 C 0.128 3.872 5 C -0.204 4.204 6 C -0.073 4.073 7 C -0.127 4.127 8 C 0.198 3.802 9 H 0.102 0.898 10 C -0.157 4.157 11 N -0.701 5.701 12 C 0.513 3.487 13 N -0.616 5.616 14 C 0.370 3.630 15 N -0.557 5.557 16 C 0.368 3.632 17 C -0.337 4.337 18 C 0.072 3.928 19 N -0.241 5.241 20 N -0.333 5.333 21 C 0.237 3.763 22 C -0.538 4.538 23 H 0.078 0.922 24 C 0.080 3.920 25 N -0.888 5.888 26 Si 0.875 3.125 27 H -0.270 1.270 28 H -0.280 1.280 29 H -0.264 1.264 30 C -0.066 4.066 31 C -0.149 4.149 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.128 0.872 38 H 0.124 0.876 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.054 0.946 42 H 0.407 0.593 43 H 0.196 0.804 44 H 0.183 0.817 45 H 0.051 0.949 46 H 0.052 0.948 47 H 0.268 0.732 48 H 0.133 0.867 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.770 7.655 8.887 31.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.232 6.232 4 C 0.083 3.917 5 C -0.223 4.223 6 C -0.091 4.091 7 C -0.128 4.128 8 C 0.093 3.907 9 H 0.120 0.880 10 C -0.216 4.216 11 N -0.334 5.334 12 C 0.261 3.739 13 N -0.346 5.346 14 C 0.076 3.924 15 N -0.282 5.282 16 C 0.120 3.880 17 C -0.355 4.355 18 C -0.123 4.123 19 N -0.056 5.056 20 N -0.119 5.119 21 C 0.118 3.882 22 C -0.576 4.576 23 H 0.096 0.904 24 C -0.124 4.124 25 N -0.525 5.525 26 Si 0.701 3.299 27 H -0.195 1.195 28 H -0.205 1.205 29 H -0.189 1.189 30 C -0.084 4.084 31 C -0.168 4.168 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.146 0.854 38 H 0.142 0.858 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.244 0.756 43 H 0.212 0.788 44 H 0.200 0.800 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.078 0.922 48 H 0.151 0.849 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -28.689 7.620 8.225 30.802 hybrid contribution -0.288 -0.662 -0.524 0.892 sum -28.976 6.958 7.701 30.779 Atomic orbital electron populations 1.21782 0.92661 1.02966 1.03556 1.22801 0.95954 0.81874 1.01517 1.86073 1.19073 1.29426 1.88584 1.19020 0.82259 0.94201 0.96214 1.21206 0.94170 0.98137 1.08793 1.20718 0.94304 0.96751 0.97375 1.19911 0.95152 0.93483 1.04215 1.19702 0.86633 0.94018 0.90310 0.88032 1.22180 1.02359 1.01887 0.95135 1.44533 1.17817 1.21177 1.49914 1.17878 0.84631 0.87366 0.84043 1.67950 1.13585 1.19915 1.33183 1.24426 0.85744 0.96489 0.85756 1.67505 1.36750 1.02857 1.21107 1.18892 0.89225 0.89257 0.90618 1.19587 1.02013 1.00370 1.13497 1.23373 0.98749 0.93089 0.97082 1.76942 0.97224 1.12093 1.19343 1.48951 1.17394 1.08523 1.37000 1.20082 0.77745 0.98933 0.91397 1.21113 0.93990 1.41630 1.00893 0.90418 1.24770 0.95560 0.94235 0.97857 1.69875 1.03472 1.42454 1.36679 0.86873 0.78995 0.79334 0.84738 1.19490 1.20536 1.18879 1.20824 0.91927 0.98765 0.96915 1.20421 0.95122 0.94872 1.06337 0.91476 0.90284 0.91501 0.91961 0.91914 0.85410 0.85799 0.91217 0.91670 0.92700 0.75599 0.78774 0.80024 0.93084 0.93061 0.92160 0.84888 0.85070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 10.28 37.16 0.38 -0.23 16 2 C 0.05 0.30 5.46 37.16 0.20 0.50 16 3 O -0.32 -2.68 10.14 -19.43 -0.20 -2.88 16 4 C 0.13 1.11 6.69 -39.22 -0.26 0.85 16 5 C -0.20 -1.58 9.04 -39.44 -0.36 -1.94 16 6 C -0.07 -0.57 9.05 -39.60 -0.36 -0.93 16 7 C -0.13 -1.06 4.96 -104.60 -0.52 -1.58 16 8 C 0.20 1.85 2.80 -69.09 -0.19 1.65 16 9 H 0.10 1.03 7.43 -51.93 -0.39 0.65 16 10 C -0.16 -1.42 9.47 37.15 0.35 -1.07 16 11 N -0.70 -7.65 5.15 -54.73 -0.28 -7.94 16 12 C 0.51 7.69 7.53 -154.85 -1.17 6.52 16 13 N -0.62 -9.38 9.34 -13.62 -0.13 -9.50 16 14 C 0.37 6.01 12.24 -92.12 -1.13 4.89 16 15 N -0.56 -11.48 10.47 -13.97 -0.15 -11.63 16 16 C 0.37 7.97 8.04 -156.23 -1.26 6.72 16 17 C -0.34 -6.01 6.14 -106.82 -0.66 -6.67 16 18 C 0.07 1.21 11.87 -17.11 -0.20 1.01 16 19 N -0.24 -5.07 12.45 30.80 0.38 -4.69 16 20 N -0.33 -7.81 3.63 -61.64 -0.22 -8.03 16 21 C 0.24 5.97 5.26 -5.19 -0.03 5.94 16 22 C -0.54 -15.68 9.94 -34.43 -0.34 -16.02 16 23 H 0.08 2.55 8.06 -52.49 -0.42 2.12 16 24 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 25 N -0.89 -27.08 13.96 55.43 0.77 -26.30 16 26 Si 0.87 20.93 27.47 -169.99 -4.67 16.26 16 27 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 28 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 29 H -0.26 -6.01 6.54 56.52 0.37 -5.64 16 30 C -0.07 -0.52 9.66 -39.61 -0.38 -0.90 16 31 C -0.15 -1.22 9.99 -39.44 -0.39 -1.61 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.06 0.29 7.65 -51.93 -0.40 -0.11 16 36 H 0.06 0.30 7.68 -51.93 -0.40 -0.09 16 37 H 0.13 0.76 6.30 -52.49 -0.33 0.43 16 38 H 0.12 0.79 6.91 -52.48 -0.36 0.43 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 42 H 0.41 3.69 6.73 -40.82 -0.27 3.42 16 43 H 0.20 2.36 8.06 -52.49 -0.42 1.94 16 44 H 0.18 2.05 8.06 -52.49 -0.42 1.62 16 45 H 0.05 1.25 7.20 -51.93 -0.37 0.88 16 46 H 0.05 1.27 7.57 -51.93 -0.39 0.88 16 47 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 48 H 0.13 0.81 8.03 -52.48 -0.42 0.39 16 49 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 412.14 15.07 6.21 6.21 Total: -1.00 -35.26 412.14 -11.42 -46.68 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -6.73 Total: 2.49 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -6.40 Total: -0.67 kcal Atomic # 7 Polarization: -68.47 SS G_CDS: 0.38 Total: -68.09 kcal Atomic # 8 Polarization: -2.68 SS G_CDS: -0.20 Total: -2.88 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.26 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -35.26 -11.42 -46.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065520290.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.018 kcal (2) G-P(sol) polarization free energy of solvation -35.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds