Wall clock time and date at job start Tue Mar 31 2020 05:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42906 * 109.46752 * 2 1 4 4 C 1.35903 * 116.99522 * 179.97438 * 3 2 1 5 5 C 1.38725 * 120.05861 * 359.72783 * 4 3 2 6 6 C 1.38146 * 119.94398 * 179.69746 * 5 4 3 7 7 C 1.38270 * 120.05396 * 0.59582 * 6 5 4 8 8 C 1.50696 * 119.94202 * 179.69556 * 7 6 5 9 9 H 1.08999 * 109.46886 * 199.98176 * 8 7 6 10 10 C 1.52999 * 109.46745 * 79.98445 * 8 7 6 11 11 N 1.46491 * 109.47767 * 319.98485 * 8 7 6 12 12 C 1.38111 * 120.00592 * 204.99969 * 11 8 7 13 13 N 1.32868 * 120.80599 * 359.71476 * 12 11 8 14 14 C 1.32126 * 121.18888 * 179.69740 * 13 12 11 15 15 N 1.31505 * 122.64780 * 0.63274 * 14 13 12 16 16 C 1.33201 * 120.68059 * 359.68026 * 15 14 13 17 17 C 1.40806 * 120.81517 * 179.97438 * 12 11 8 18 18 C 1.41165 * 134.70758 * 0.02562 * 17 12 11 19 19 N 1.30248 * 108.47279 * 179.97438 * 18 17 12 20 20 N 1.36312 * 134.61233 * 179.97438 * 16 15 14 21 21 C 1.46499 * 125.87341 * 359.97438 * 20 16 15 22 22 C 1.50699 * 109.47089 * 90.00249 * 21 20 16 23 23 H 1.07998 * 120.00276 * 0.02562 * 22 21 20 24 24 C 1.37879 * 120.00159 * 179.97438 * 22 21 20 25 25 N 1.31516 * 119.99750 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00089 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47278 * 0.02562 * 26 24 22 28 28 H 1.48507 * 109.46791 * 120.00618 * 26 24 22 29 29 H 1.48494 * 109.47594 * 240.00242 * 26 24 22 30 30 C 1.38261 * 120.10805 * 359.68267 * 7 6 5 31 31 C 1.38138 * 120.06029 * 0.02562 * 30 7 6 32 32 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47050 * 299.99753 * 1 2 3 34 34 H 1.09001 * 109.46801 * 59.99865 * 1 2 3 35 35 H 1.08993 * 109.46955 * 120.00418 * 2 1 3 36 36 H 1.09000 * 109.47050 * 240.00247 * 2 1 3 37 37 H 1.08000 * 120.02603 * 359.97438 * 5 4 3 38 38 H 1.07995 * 119.97392 * 180.32196 * 6 5 4 39 39 H 1.09007 * 109.47405 * 179.97438 * 10 8 7 40 40 H 1.08999 * 109.47209 * 299.99533 * 10 8 7 41 41 H 1.09010 * 109.47383 * 59.99786 * 10 8 7 42 42 H 0.97003 * 120.00084 * 25.00051 * 11 8 7 43 43 H 1.07997 * 118.67378 * 180.33128 * 14 13 12 44 44 H 1.08003 * 125.76273 * 359.96566 * 18 17 12 45 45 H 1.08996 * 109.47099 * 209.99885 * 21 20 16 46 46 H 1.08995 * 109.47275 * 330.00266 * 21 20 16 47 47 H 0.97000 * 119.99701 * 179.97438 * 25 24 22 48 48 H 1.08006 * 119.96917 * 180.02562 * 30 7 6 49 49 H 1.07997 * 120.03028 * 180.02562 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1998 0.4261 0.0068 6 6 5.5690 0.6098 0.0010 7 6 6.0962 1.8880 0.0014 8 6 7.5902 2.0855 0.0021 9 1 7.8236 3.0905 0.3535 10 6 8.1291 1.9038 -1.4183 11 7 8.2126 1.1007 0.8901 12 6 9.4403 1.3668 1.4641 13 7 10.0736 2.5085 1.2173 14 6 11.2456 2.7735 1.7669 15 7 11.8581 1.9329 2.5717 16 6 11.3068 0.7591 2.8758 17 6 10.0539 0.4327 2.3206 18 6 9.7092 -0.8484 2.8029 19 7 10.6647 -1.2666 3.5830 20 7 11.6746 -0.2987 3.6530 21 6 12.9126 -0.4042 4.4291 22 6 12.6883 0.1537 5.8109 23 1 11.7204 0.5472 6.0839 24 6 13.7187 0.1609 6.7271 25 7 14.8973 -0.3187 6.3949 26 14 13.4409 0.8532 8.4397 27 1 12.0388 1.3273 8.5606 28 1 13.6935 -0.2065 9.4489 29 1 14.3694 1.9887 8.6713 30 6 5.2549 2.9852 0.0011 31 6 3.8851 2.8069 0.0008 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5139 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 1.8934 -0.5138 -0.8900 37 1 3.7885 -0.5725 0.0116 38 1 6.2281 -0.2457 0.0006 39 1 9.2097 2.0471 -1.4181 40 1 7.8956 0.8988 -1.7698 41 1 7.6659 2.6367 -2.0792 42 1 7.7626 0.2615 1.0751 43 1 11.7219 3.7164 1.5425 44 1 8.8056 -1.3902 2.5652 45 1 13.2067 -1.4512 4.5034 46 1 13.7018 0.1605 3.9329 47 1 15.6223 -0.3133 7.0393 48 1 5.6692 3.9827 0.0010 49 1 3.2284 3.6643 0.0001 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065520293.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:47 Heat of formation + Delta-G solvation = 100.681412 kcal Electronic energy + Delta-G solvation = -31527.320722 eV Core-core repulsion = 27263.303243 eV Total energy + Delta-G solvation = -4264.017479 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.175 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.38540 -40.60832 -38.91443 -38.15035 -36.34015 -33.87723 -33.07588 -32.15820 -31.46317 -31.29525 -31.01471 -29.05231 -28.56997 -27.16908 -24.63436 -24.07656 -23.89103 -23.34991 -22.51195 -21.95939 -20.84781 -20.03283 -18.74982 -17.99255 -17.37736 -16.69959 -16.61758 -16.53861 -16.09437 -15.79179 -15.20756 -15.11062 -14.65991 -14.28887 -14.20881 -14.07474 -13.92453 -13.76529 -13.64252 -13.59479 -13.33096 -13.15555 -13.01167 -12.67940 -12.27847 -12.17419 -12.13535 -11.95244 -11.65215 -11.29630 -11.21685 -11.12248 -11.07391 -10.95417 -10.89472 -10.74246 -10.27966 -10.06468 -9.80792 -9.35905 -9.24542 -8.65947 -8.58849 -8.45383 -8.20731 -7.61795 -6.20969 -4.27177 0.98544 1.02725 1.33577 1.96432 2.77517 2.94680 3.04759 3.13907 3.24119 3.31176 3.38085 3.42852 4.32028 4.34612 4.35164 4.42905 4.43282 4.49749 4.57330 4.62975 4.74978 4.76307 4.93616 4.97671 4.99785 5.07378 5.14483 5.17699 5.19169 5.24169 5.29228 5.35548 5.49985 5.54316 5.61807 5.64530 5.72958 5.78927 5.89210 5.97832 6.08283 6.22035 6.38508 6.40682 6.71019 6.94452 7.02587 7.04584 7.11978 7.27739 7.52027 7.73709 7.91784 7.94259 8.24678 8.73672 8.85071 9.37838 10.87298 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.013422 B = 0.001868 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.638805 B =14983.914490 C =15910.734213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 O -0.317 6.317 4 C 0.128 3.872 5 C -0.204 4.204 6 C -0.073 4.073 7 C -0.127 4.127 8 C 0.198 3.802 9 H 0.102 0.898 10 C -0.156 4.156 11 N -0.702 5.702 12 C 0.512 3.488 13 N -0.617 5.617 14 C 0.367 3.633 15 N -0.555 5.555 16 C 0.364 3.636 17 C -0.338 4.338 18 C 0.068 3.932 19 N -0.243 5.243 20 N -0.332 5.332 21 C 0.263 3.737 22 C -0.532 4.532 23 H 0.062 0.938 24 C 0.066 3.934 25 N -0.891 5.891 26 Si 0.907 3.093 27 H -0.273 1.273 28 H -0.281 1.281 29 H -0.280 1.280 30 C -0.066 4.066 31 C -0.149 4.149 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.128 0.872 38 H 0.124 0.876 39 H 0.068 0.932 40 H 0.053 0.947 41 H 0.064 0.936 42 H 0.406 0.594 43 H 0.195 0.805 44 H 0.181 0.819 45 H 0.054 0.946 46 H 0.060 0.940 47 H 0.267 0.733 48 H 0.133 0.867 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.082 2.923 -18.056 31.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.231 6.231 4 C 0.083 3.917 5 C -0.223 4.223 6 C -0.092 4.092 7 C -0.128 4.128 8 C 0.093 3.907 9 H 0.119 0.881 10 C -0.215 4.215 11 N -0.335 5.335 12 C 0.260 3.740 13 N -0.348 5.348 14 C 0.073 3.927 15 N -0.280 5.280 16 C 0.116 3.884 17 C -0.356 4.356 18 C -0.127 4.127 19 N -0.059 5.059 20 N -0.119 5.119 21 C 0.146 3.854 22 C -0.571 4.571 23 H 0.080 0.920 24 C -0.137 4.137 25 N -0.529 5.529 26 Si 0.734 3.266 27 H -0.197 1.197 28 H -0.207 1.207 29 H -0.206 1.206 30 C -0.084 4.084 31 C -0.167 4.167 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.146 0.854 38 H 0.142 0.858 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.244 0.756 43 H 0.211 0.789 44 H 0.198 0.802 45 H 0.072 0.928 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.151 0.849 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -24.000 2.908 -17.328 29.744 hybrid contribution -0.792 -0.420 0.806 1.205 sum -24.792 2.489 -16.522 29.897 Atomic orbital electron populations 1.21782 0.92667 1.02956 1.03561 1.22799 0.95951 0.81888 1.01503 1.86073 1.19077 1.29412 1.88587 1.19020 0.82255 0.94204 0.96223 1.21202 0.94174 0.98123 1.08819 1.20708 0.94288 0.96730 0.97427 1.19912 0.95177 0.93480 1.04187 1.19690 0.86638 0.94096 0.90246 0.88053 1.22175 1.02278 1.01797 0.95210 1.44519 1.17850 1.21171 1.49995 1.17882 0.84638 0.87396 0.84132 1.67943 1.13644 1.19939 1.33255 1.24412 0.85986 0.96616 0.85724 1.67517 1.37511 1.02527 1.20408 1.18935 0.89498 0.89160 0.90790 1.19613 1.01974 1.00449 1.13586 1.23340 0.99073 0.93393 0.96911 1.76932 0.97517 1.13592 1.17884 1.49448 1.17834 1.08889 1.35694 1.19794 0.75748 0.99750 0.90064 1.21290 0.98164 1.41607 0.96031 0.92003 1.24899 0.94649 0.94969 0.99198 1.69930 1.01989 1.45222 1.35767 0.86290 0.78460 0.78742 0.83098 1.19707 1.20670 1.20573 1.20829 0.91933 0.98784 0.96877 1.20423 0.95128 0.94877 1.06305 0.90292 0.91455 0.91519 0.91904 0.91986 0.85424 0.85830 0.91281 0.92766 0.91716 0.75643 0.78887 0.80237 0.92828 0.92236 0.92335 0.84882 0.85066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 10.28 37.16 0.38 -0.27 16 2 C 0.05 0.31 5.46 37.16 0.20 0.51 16 3 O -0.32 -2.76 10.14 -19.43 -0.20 -2.96 16 4 C 0.13 1.15 6.69 -39.22 -0.26 0.88 16 5 C -0.20 -1.63 9.04 -39.44 -0.36 -1.98 16 6 C -0.07 -0.58 9.05 -39.60 -0.36 -0.94 16 7 C -0.13 -1.09 4.96 -104.60 -0.52 -1.61 16 8 C 0.20 1.88 2.80 -69.09 -0.19 1.69 16 9 H 0.10 1.07 7.43 -51.93 -0.39 0.68 16 10 C -0.16 -1.37 9.47 37.16 0.35 -1.02 16 11 N -0.70 -7.83 5.15 -54.73 -0.28 -8.11 16 12 C 0.51 7.81 7.53 -154.84 -1.17 6.65 16 13 N -0.62 -9.57 9.35 -13.62 -0.13 -9.69 16 14 C 0.37 6.09 12.24 -92.12 -1.13 4.96 16 15 N -0.55 -11.68 10.47 -13.97 -0.15 -11.83 16 16 C 0.36 8.06 8.04 -156.23 -1.26 6.80 16 17 C -0.34 -6.16 6.14 -106.82 -0.66 -6.81 16 18 C 0.07 1.16 11.87 -17.11 -0.20 0.95 16 19 N -0.24 -5.24 12.45 30.80 0.38 -4.85 16 20 N -0.33 -8.00 3.63 -61.65 -0.22 -8.23 16 21 C 0.26 7.07 6.19 -5.19 -0.03 7.04 16 22 C -0.53 -15.31 9.39 -34.44 -0.32 -15.64 16 23 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 24 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 25 N -0.89 -25.89 13.29 55.43 0.74 -25.15 16 26 Si 0.91 21.87 29.54 -169.99 -5.02 16.85 16 27 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 28 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 29 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 30 C -0.07 -0.54 9.66 -39.61 -0.38 -0.92 16 31 C -0.15 -1.27 9.99 -39.44 -0.39 -1.66 16 32 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.06 0.32 7.65 -51.93 -0.40 -0.07 16 36 H 0.06 0.30 7.68 -51.93 -0.40 -0.10 16 37 H 0.13 0.78 6.30 -52.49 -0.33 0.45 16 38 H 0.12 0.80 6.91 -52.49 -0.36 0.44 16 39 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 40 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.49 8.14 -51.92 -0.42 0.06 16 42 H 0.41 3.79 6.73 -40.82 -0.27 3.52 16 43 H 0.19 2.42 8.06 -52.49 -0.42 1.99 16 44 H 0.18 2.09 8.06 -52.48 -0.42 1.67 16 45 H 0.05 1.48 8.14 -51.93 -0.42 1.06 16 46 H 0.06 1.67 8.14 -51.93 -0.42 1.25 16 47 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 48 H 0.13 0.87 8.03 -52.48 -0.42 0.44 16 49 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 415.75 15.07 6.27 6.27 Total: -1.00 -34.03 415.75 -11.77 -45.80 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -6.77 Total: 1.52 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: -6.39 Total: 0.40 kcal Atomic # 7 Polarization: -68.20 SS G_CDS: 0.34 Total: -67.86 kcal Atomic # 8 Polarization: -2.76 SS G_CDS: -0.20 Total: -2.96 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -34.03 -11.77 -45.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065520293.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.482 kcal (2) G-P(sol) polarization free energy of solvation -34.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds