Wall clock time and date at job start Tue Mar 31 2020 07:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47498 * 2 1 4 4 N 1.46506 * 109.47028 * 120.00162 * 2 1 3 5 5 C 1.46500 * 119.99968 * 299.99646 * 4 2 1 6 6 C 1.50701 * 109.46889 * 270.00292 * 5 4 2 7 7 H 1.07998 * 120.00384 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99961 * 180.02562 * 6 5 4 9 9 N 1.31520 * 120.00048 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00118 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47146 * 59.99969 * 10 8 6 12 12 H 1.48506 * 109.47106 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47115 * 299.99810 * 10 8 6 14 14 C 1.34773 * 119.99867 * 119.99629 * 4 2 1 15 15 O 1.21290 * 119.99502 * 179.97438 * 14 4 2 16 16 C 1.50695 * 120.00498 * 359.97438 * 14 4 2 17 17 C 1.50697 * 109.47405 * 180.02562 * 16 14 4 18 18 C 1.35127 * 125.69388 * 125.01686 * 17 16 14 19 19 N 1.36818 * 107.18209 * 179.97438 * 18 17 16 20 20 C 1.36577 * 132.54873 * 179.97438 * 19 18 17 21 21 C 1.35034 * 120.61131 * 180.02562 * 20 19 18 22 22 Cl 1.73605 * 119.85573 * 179.72828 * 21 20 19 23 23 C 1.40552 * 120.28775 * 0.02562 * 21 20 19 24 24 C 1.36103 * 119.67396 * 359.97438 * 23 21 20 25 25 Cl 1.73604 * 120.33288 * 179.97438 * 24 23 21 26 26 C 1.37031 * 107.00618 * 0.02562 * 19 18 17 27 27 N 1.32575 * 108.04298 * 359.97438 * 26 19 18 28 28 H 1.09002 * 109.46686 * 300.00021 * 1 2 3 29 29 H 1.09002 * 109.47118 * 59.99750 * 1 2 3 30 30 H 1.08995 * 109.47612 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47112 * 239.99666 * 2 1 3 32 32 H 1.09003 * 109.47144 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47140 * 300.00237 * 3 2 1 34 34 H 1.08995 * 109.47535 * 60.00239 * 3 2 1 35 35 H 1.09000 * 109.47229 * 29.99647 * 5 4 2 36 36 H 1.08997 * 109.47310 * 150.00051 * 5 4 2 37 37 H 0.97001 * 120.00047 * 179.97438 * 9 8 6 38 38 H 1.09001 * 109.47045 * 59.99922 * 16 14 4 39 39 H 1.09000 * 109.47375 * 300.00350 * 16 14 4 40 40 H 1.08001 * 126.41179 * 0.02562 * 18 17 16 41 41 H 1.08000 * 119.69466 * 359.97438 * 20 19 18 42 42 H 1.07995 * 120.16246 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.6644 -0.1901 2.5268 6 6 2.7032 0.8018 2.9829 7 1 3.5432 1.0356 2.3457 8 6 2.5818 1.4100 4.2143 9 7 1.5592 1.1249 4.9906 10 14 3.8698 2.6390 4.7801 11 1 3.9254 3.7735 3.8235 12 1 3.5117 3.1455 6.1294 13 1 5.1966 1.9745 4.8375 14 6 2.7931 -1.7865 1.0725 15 8 3.1977 -2.3580 2.0629 16 6 3.1566 -2.3018 -0.2962 17 6 4.0225 -3.5274 -0.1579 18 6 3.7747 -4.7344 -0.7124 19 7 4.7979 -5.5654 -0.3457 20 6 5.0625 -6.8783 -0.6134 21 6 6.1685 -7.4721 -0.1159 22 17 6.4820 -9.1440 -0.4627 23 6 7.0638 -6.7442 0.6867 24 6 6.8115 -5.4352 0.9608 25 17 7.9054 -4.5201 1.9507 26 6 5.6519 -4.8299 0.4336 27 7 5.1626 -3.6017 0.5327 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1301 1.4423 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9563 0.8899 35 1 0.6905 0.2974 2.4844 36 1 1.6238 -1.0226 3.2292 37 1 1.4740 1.5525 5.8571 38 1 3.7015 -1.5312 -0.8416 39 1 2.2481 -2.5588 -0.8408 40 1 2.9278 -4.9944 -1.3302 41 1 4.3804 -7.4470 -1.2279 42 1 7.9475 -7.2213 1.0839 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065576301.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:29 Heat of formation + Delta-G solvation = 47.279366 kcal Electronic energy + Delta-G solvation = -28283.816973 eV Core-core repulsion = 24124.489703 eV Total energy + Delta-G solvation = -4159.327269 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 369.075 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.07585 -39.18313 -38.19892 -37.09703 -36.51929 -35.78153 -33.65943 -32.82652 -31.81307 -30.73892 -29.44050 -28.46940 -26.82087 -26.54114 -23.89724 -23.15323 -22.80298 -21.40859 -20.70193 -18.55277 -17.85088 -17.52482 -16.70469 -16.48682 -16.33429 -16.09131 -15.50652 -15.03871 -14.75454 -14.48689 -14.18264 -13.55107 -13.52721 -13.45682 -13.03015 -13.00542 -12.77095 -12.71003 -12.66754 -12.25833 -11.81189 -11.65636 -11.59355 -11.49454 -11.22807 -11.16840 -11.09228 -10.84327 -10.79358 -10.52627 -10.50437 -10.31260 -10.06969 -9.93458 -9.46349 -8.95757 -8.63190 -8.33105 -8.10791 -7.54222 -5.94967 -3.97356 0.15410 0.80179 1.12199 1.85135 2.47030 2.55391 3.13444 3.38021 3.42479 3.45929 3.55446 3.78778 4.00207 4.10582 4.23528 4.52564 4.54667 4.85922 4.90570 5.14919 5.20540 5.26401 5.33250 5.37245 5.40650 5.54298 5.59856 5.70463 5.75808 5.89829 6.03755 6.18965 6.28467 6.40370 6.42492 6.64447 6.67145 7.02477 7.19984 7.56062 7.67539 7.76480 8.02667 8.35270 8.54454 9.02140 9.23533 9.66550 11.13204 Molecular weight = 369.08amu Principal moments of inertia in cm(-1) A = 0.012044 B = 0.002572 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.273352 B =10885.410146 C =12469.511279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.133 3.867 3 C -0.158 4.158 4 N -0.596 5.596 5 C 0.249 3.751 6 C -0.515 4.515 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.898 5.898 10 Si 0.893 3.107 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.508 3.492 15 O -0.520 6.520 16 C -0.067 4.067 17 C 0.095 3.905 18 C -0.078 4.078 19 N -0.356 5.356 20 C 0.078 3.922 21 C -0.059 4.059 22 Cl -0.032 7.032 23 C -0.101 4.101 24 C 0.026 3.974 25 Cl -0.009 7.009 26 C 0.212 3.788 27 N -0.423 5.423 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.047 0.953 34 H 0.080 0.920 35 H 0.033 0.967 36 H 0.040 0.960 37 H 0.262 0.738 38 H 0.107 0.893 39 H 0.103 0.897 40 H 0.191 0.809 41 H 0.176 0.824 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.404 -17.046 -17.638 25.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.029 3.971 3 C -0.216 4.216 4 N -0.329 5.329 5 C 0.130 3.870 6 C -0.554 4.554 7 H 0.076 0.924 8 C -0.142 4.142 9 N -0.537 5.537 10 Si 0.721 3.279 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.202 1.202 14 C 0.293 3.707 15 O -0.395 6.395 16 C -0.108 4.108 17 C -0.038 4.038 18 C -0.208 4.208 19 N -0.030 5.030 20 C -0.046 4.046 21 C -0.089 4.089 22 Cl -0.003 7.003 23 C -0.126 4.126 24 C -0.004 4.004 25 Cl 0.020 6.980 26 C -0.032 4.032 27 N -0.141 5.141 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.125 0.875 39 H 0.121 0.879 40 H 0.208 0.792 41 H 0.193 0.807 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.945 -16.684 -16.433 24.161 hybrid contribution 0.374 -0.021 -0.008 0.375 sum 6.319 -16.705 -16.440 24.275 Atomic orbital electron populations 1.22163 0.95706 1.01704 1.02428 1.20983 0.93998 0.94195 0.87945 1.22146 1.01441 0.95746 1.02234 1.48305 1.49572 1.26504 1.08546 1.19189 0.95723 0.94858 0.77249 1.21418 1.08788 1.23163 1.02018 0.92412 1.24912 0.95697 0.97186 0.96373 1.69925 1.29608 1.43537 1.10676 0.86636 0.82284 0.81307 0.77673 1.20310 1.21356 1.20198 1.19917 0.79541 0.81308 0.89908 1.90728 1.51876 1.57786 1.39157 1.20190 0.98264 0.93826 0.98487 1.20373 0.93664 0.94175 0.95638 1.22464 0.96055 0.90461 1.11845 1.42596 1.18558 1.08123 1.33748 1.21293 0.98244 0.83526 1.01492 1.19706 0.96987 0.88270 1.03959 1.98401 1.95278 1.12654 1.93962 1.20728 1.00957 0.91542 0.99324 1.19410 0.91230 0.91822 0.97906 1.98433 1.59553 1.73637 1.66357 1.20399 0.94249 0.88978 0.99620 1.70828 1.10055 1.14198 1.19013 0.91320 0.92349 0.92966 0.90846 0.92691 0.93371 0.90076 0.94895 0.94236 0.92863 0.87530 0.87853 0.79204 0.80713 0.82281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 9.17 37.16 0.34 -1.93 16 2 C 0.13 2.10 3.17 -67.93 -0.22 1.88 16 3 C -0.16 -2.57 8.47 37.15 0.31 -2.26 16 4 N -0.60 -12.41 2.39 -167.47 -0.40 -12.81 16 5 C 0.25 6.46 4.59 -5.19 -0.02 6.44 16 6 C -0.51 -14.56 7.83 -34.44 -0.27 -14.83 16 7 H 0.06 1.65 7.63 -52.49 -0.40 1.25 16 8 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 9 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 10 Si 0.89 22.39 29.54 -169.99 -5.02 17.37 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 14 C 0.51 10.66 7.66 -10.99 -0.08 10.57 16 15 O -0.52 -13.63 15.14 5.55 0.08 -13.55 16 16 C -0.07 -0.98 4.57 -29.04 -0.13 -1.11 16 17 C 0.10 1.49 5.85 -82.98 -0.49 1.01 16 18 C -0.08 -0.93 11.63 -16.43 -0.19 -1.12 16 19 N -0.36 -4.39 2.95 -62.59 -0.18 -4.57 16 20 C 0.08 0.69 10.70 -16.58 -0.18 0.52 16 21 C -0.06 -0.51 6.28 -39.85 -0.25 -0.76 16 22 Cl -0.03 -0.22 28.94 -51.86 -1.50 -1.72 16 23 C -0.10 -1.00 9.64 -39.48 -0.38 -1.38 16 24 C 0.03 0.35 6.34 -39.29 -0.25 0.10 16 25 Cl -0.01 -0.13 28.98 -51.86 -1.50 -1.63 16 26 C 0.21 3.29 7.63 -156.04 -1.19 2.10 16 27 N -0.42 -7.87 10.67 -8.99 -0.10 -7.96 16 28 H 0.07 1.13 6.66 -51.93 -0.35 0.78 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.91 5.77 -51.93 -0.30 0.61 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 1.58 6.92 -51.93 -0.36 1.22 16 35 H 0.03 0.86 6.43 -51.93 -0.33 0.53 16 36 H 0.04 1.18 7.42 -51.93 -0.39 0.80 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.11 1.41 7.79 -51.93 -0.40 1.01 16 39 H 0.10 1.09 7.75 -51.93 -0.40 0.68 16 40 H 0.19 1.39 8.06 -52.49 -0.42 0.96 16 41 H 0.18 0.93 8.06 -52.49 -0.42 0.50 16 42 H 0.16 1.19 8.06 -52.49 -0.42 0.76 16 LS Contribution 383.62 15.07 5.78 5.78 Total: -1.00 -36.49 383.62 -10.22 -46.71 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -5.03 Total: -2.20 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -3.09 Total: 0.85 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: 0.06 Total: -51.61 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: 0.08 Total: -13.55 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -3.00 Total: -3.35 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.49 -10.22 -46.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065576301.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.987 kcal (2) G-P(sol) polarization free energy of solvation -36.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds