Wall clock time and date at job start Tue Mar 31 2020 05:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38068 * 126.30976 * 2 1 4 4 C 1.47407 * 126.40916 * 0.05575 * 3 2 1 5 5 O 1.21610 * 120.00510 * 322.49417 * 4 3 2 6 6 N 1.34782 * 119.99985 * 142.49692 * 4 3 2 7 7 C 1.46497 * 119.99734 * 5.42445 * 6 4 3 8 8 C 1.50701 * 109.47348 * 95.64205 * 7 6 4 9 9 H 1.07995 * 119.99615 * 359.97438 * 8 7 6 10 10 C 1.37870 * 120.00060 * 180.02562 * 8 7 6 11 11 N 1.31518 * 120.00056 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 120.00114 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47028 * 89.99741 * 12 10 8 14 14 H 1.48502 * 109.46881 * 209.99849 * 12 10 8 15 15 H 1.48499 * 109.46592 * 329.99724 * 12 10 8 16 16 C 1.46496 * 119.99973 * 185.42255 * 6 4 3 17 17 H 1.09001 * 109.47594 * 4.32265 * 16 6 4 18 18 C 1.52994 * 109.47185 * 124.32400 * 16 6 4 19 19 C 1.52996 * 109.47017 * 244.32219 * 16 6 4 20 20 C 1.53005 * 117.50093 * 248.62162 * 19 16 6 21 21 C 1.53002 * 60.00157 * 252.51062 * 20 19 16 22 22 C 1.41335 * 107.17826 * 180.24074 * 3 2 1 23 23 N 1.30478 * 108.06587 * 359.78253 * 22 3 2 24 24 N 1.34538 * 126.30813 * 179.86739 * 2 1 3 25 25 C 1.40146 * 125.77353 * 0.02562 * 24 2 1 26 26 C 1.38870 * 120.06862 * 50.65423 * 25 24 2 27 27 C 1.38097 * 119.93413 * 180.25691 * 26 25 24 28 28 C 1.38306 * 120.06488 * 359.76208 * 27 26 25 29 29 C 1.38258 * 120.13504 * 359.97438 * 28 27 26 30 30 C 1.38136 * 120.07125 * 359.97438 * 29 28 27 31 31 C 1.50700 * 120.03568 * 180.02562 * 30 29 28 32 32 H 1.08997 * 109.47604 * 264.00666 * 1 2 3 33 33 H 1.09004 * 109.47149 * 24.00608 * 1 2 3 34 34 H 1.09004 * 109.46905 * 144.00261 * 1 2 3 35 35 H 1.09003 * 109.47304 * 215.64029 * 7 6 4 36 36 H 1.09003 * 109.47437 * 335.64051 * 7 6 4 37 37 H 0.97002 * 119.99864 * 180.02562 * 11 10 8 38 38 H 1.08998 * 109.47467 * 59.99423 * 18 16 6 39 39 H 1.09003 * 109.47324 * 179.97438 * 18 16 6 40 40 H 1.09004 * 109.47299 * 299.99866 * 18 16 6 41 41 H 1.09003 * 115.55569 * 34.33016 * 19 16 6 42 42 H 1.08998 * 117.49485 * 0.02562 * 20 19 16 43 43 H 1.08998 * 117.50105 * 145.02048 * 20 19 16 44 44 H 1.09001 * 117.49429 * 252.50868 * 21 20 19 45 45 H 1.08999 * 117.51639 * 107.47686 * 21 20 19 46 46 H 1.07998 * 125.96347 * 179.79576 * 22 3 2 47 47 H 1.08003 * 120.02970 * 0.02562 * 26 25 24 48 48 H 1.07997 * 119.96462 * 179.74658 * 27 26 25 49 49 H 1.08000 * 119.93156 * 179.97438 * 28 27 26 50 50 H 1.08004 * 119.96404 * 179.97438 * 29 28 27 51 51 H 1.09000 * 109.46926 * 89.36534 * 31 30 29 52 52 H 1.09003 * 109.47050 * 329.36374 * 31 30 29 53 53 H 1.08991 * 109.46854 * 209.36139 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1126 0.0000 4 6 1.8867 2.5201 0.0012 5 8 0.9078 2.8530 -0.6391 6 7 2.5713 3.4383 0.7118 7 6 3.8165 3.0631 1.3861 8 6 4.9893 3.4150 0.5075 9 1 4.8236 3.8719 -0.4569 10 6 6.2737 3.1525 0.9344 11 7 6.4755 2.5956 2.1086 12 14 7.7274 3.5881 -0.1549 13 1 8.1753 4.9714 0.1470 14 1 8.8408 2.6398 0.1030 15 1 7.3216 3.4991 -1.5806 16 6 2.0701 4.8113 0.8098 17 1 1.1022 4.8812 0.3133 18 6 1.9162 5.1941 2.2831 19 6 3.0590 5.7645 0.1358 20 6 3.8324 6.7316 1.0345 21 6 2.7131 7.2550 0.1323 22 6 3.6599 0.6494 -0.0057 23 7 3.6356 -0.6552 -0.0041 24 7 2.3037 -1.0842 0.0025 25 6 1.8725 -2.4176 0.0051 26 6 0.9338 -2.8472 -0.9238 27 6 0.5069 -4.1605 -0.9153 28 6 1.0170 -5.0489 0.0138 29 6 1.9557 -4.6256 0.9364 30 6 2.3875 -3.3134 0.9323 31 6 3.4112 -2.8530 1.9379 32 1 -0.3634 -0.1073 1.0220 33 1 -0.3634 0.9388 -0.4181 34 1 -0.3633 -0.8315 -0.6040 35 1 3.8952 3.6022 2.3302 36 1 3.8163 1.9903 1.5792 37 1 7.3792 2.4113 2.4091 38 1 2.8840 5.1242 2.7797 39 1 1.5437 6.2159 2.3560 40 1 1.2117 4.5150 2.7633 41 1 3.5758 5.3658 -0.7372 42 1 3.6370 6.6883 2.1060 43 1 4.8583 6.9691 0.7530 44 1 3.0026 7.8368 -0.7428 45 1 1.7807 7.5563 0.6098 46 1 4.5455 1.2674 -0.0103 47 1 0.5352 -2.1538 -1.6496 48 1 -0.2262 -4.4940 -1.6348 49 1 0.6813 -6.0754 0.0188 50 1 2.3519 -5.3216 1.6610 51 1 4.4117 -3.0024 1.5321 52 1 3.3020 -3.4287 2.8570 53 1 3.2601 -1.7950 2.1517 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065588309.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:06 Heat of formation + Delta-G solvation = 89.339039 kcal Electronic energy + Delta-G solvation = -34395.789611 eV Core-core repulsion = 30234.820633 eV Total energy + Delta-G solvation = -4160.968978 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 367.200 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.81173 -40.83190 -39.97428 -38.59081 -36.36328 -34.65476 -34.46743 -34.04785 -32.81611 -31.49275 -30.13057 -29.15550 -28.34685 -27.74799 -25.91821 -24.86433 -24.18097 -23.23381 -23.07619 -22.63556 -21.29779 -20.33273 -19.51653 -18.68092 -18.48419 -17.44620 -17.33850 -17.01833 -16.79279 -16.50316 -16.14592 -15.95990 -15.69481 -15.28959 -15.01170 -14.88840 -14.65054 -14.55636 -14.38853 -14.25436 -13.87353 -13.77568 -13.71248 -13.38901 -13.25520 -13.07176 -13.02209 -12.93335 -12.87350 -12.61242 -12.50284 -12.35519 -12.33648 -12.20783 -12.06693 -11.89792 -11.80374 -11.41910 -11.15276 -10.85834 -10.78794 -10.60167 -10.42098 -9.90138 -9.79561 -9.40992 -9.22409 -8.13800 -6.23913 -0.12393 0.29433 0.73842 1.26966 1.37094 1.39447 1.43373 1.50470 2.23231 2.33743 2.50827 2.65252 3.13309 3.17529 3.55808 3.67565 3.74938 3.85130 3.93812 3.99875 4.04508 4.11270 4.23462 4.25855 4.32259 4.37171 4.46591 4.48000 4.50292 4.53204 4.59638 4.63419 4.64871 4.67421 4.85005 4.86960 4.89545 4.91784 5.02287 5.04662 5.11352 5.16886 5.22116 5.27676 5.30467 5.35707 5.38747 5.42254 5.46790 5.53388 5.56903 5.76961 5.79856 5.96926 6.16005 6.20248 6.58107 6.65023 6.90892 7.36510 7.48438 8.91026 Molecular weight = 367.20amu Principal moments of inertia in cm(-1) A = 0.010906 B = 0.003270 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.832827 B = 8559.676476 C =10256.000366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.144 3.856 3 C -0.301 4.301 4 C 0.593 3.407 5 O -0.592 6.592 6 N -0.584 5.584 7 C 0.251 3.749 8 C -0.518 4.518 9 H 0.054 0.946 10 C 0.032 3.968 11 N -0.913 5.913 12 Si 0.937 3.063 13 H -0.274 1.274 14 H -0.286 1.286 15 H -0.275 1.275 16 C 0.172 3.828 17 H 0.086 0.914 18 C -0.152 4.152 19 C -0.159 4.159 20 C -0.170 4.170 21 C -0.160 4.160 22 C 0.093 3.907 23 N -0.320 5.320 24 N -0.316 5.316 25 C 0.107 3.893 26 C -0.124 4.124 27 C -0.103 4.103 28 C -0.101 4.101 29 C -0.108 4.108 30 C -0.086 4.086 31 C -0.105 4.105 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.021 0.979 36 H 0.029 0.971 37 H 0.264 0.736 38 H 0.056 0.944 39 H 0.090 0.910 40 H 0.053 0.947 41 H 0.077 0.923 42 H 0.102 0.898 43 H 0.077 0.923 44 H 0.098 0.902 45 H 0.111 0.889 46 H 0.199 0.801 47 H 0.133 0.867 48 H 0.165 0.835 49 H 0.167 0.833 50 H 0.155 0.845 51 H 0.066 0.934 52 H 0.090 0.910 53 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.088 -10.237 -0.741 16.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.014 3.986 3 C -0.315 4.315 4 C 0.382 3.618 5 O -0.476 6.476 6 N -0.312 5.312 7 C 0.130 3.870 8 C -0.557 4.557 9 H 0.072 0.928 10 C -0.168 4.168 11 N -0.552 5.552 12 Si 0.764 3.236 13 H -0.200 1.200 14 H -0.212 1.212 15 H -0.200 1.200 16 C 0.069 3.931 17 H 0.104 0.896 18 C -0.209 4.209 19 C -0.178 4.178 20 C -0.206 4.206 21 C -0.197 4.197 22 C -0.093 4.093 23 N -0.137 5.137 24 N -0.091 5.091 25 C 0.017 3.983 26 C -0.144 4.144 27 C -0.121 4.121 28 C -0.119 4.119 29 C -0.126 4.126 30 C -0.088 4.088 31 C -0.162 4.162 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.119 0.881 35 H 0.039 0.961 36 H 0.047 0.953 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.108 0.892 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.120 0.880 43 H 0.096 0.904 44 H 0.117 0.883 45 H 0.129 0.871 46 H 0.215 0.785 47 H 0.151 0.849 48 H 0.183 0.817 49 H 0.184 0.816 50 H 0.173 0.827 51 H 0.084 0.916 52 H 0.108 0.892 53 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -12.720 -11.262 -0.905 17.013 hybrid contribution 1.474 1.339 -0.438 2.039 sum -11.246 -9.923 -1.343 15.058 Atomic orbital electron populations 1.20784 0.84104 1.05715 1.04648 1.21874 0.95846 0.85271 0.95640 1.20090 0.93359 0.93888 1.24178 1.17369 0.81830 0.84479 0.78110 1.90591 1.29926 1.81843 1.45232 1.48039 1.24577 1.09381 1.49228 1.19230 0.79644 0.95857 0.92258 1.21513 0.90908 1.39960 1.03318 0.92829 1.25426 1.00559 0.94990 0.95871 1.70012 1.22198 1.43061 1.19914 0.85868 0.79967 0.78203 0.79578 1.19960 1.21182 1.19994 1.20466 0.96254 0.79840 0.96576 0.89560 1.22155 1.01899 1.02330 0.94553 1.22394 1.02323 0.91396 1.01735 1.22937 0.96338 1.03401 0.97968 1.23077 1.00051 0.94403 1.02202 1.24974 0.98790 0.91481 0.94080 1.77323 0.96089 1.13296 1.27019 1.45665 1.03854 1.04188 1.55357 1.17785 1.00629 0.80360 0.99497 1.21322 0.97812 0.98317 0.96951 1.21406 1.00140 0.90991 0.99590 1.21705 0.95155 1.01458 0.93599 1.21299 0.97621 0.93279 1.00377 1.20082 0.98403 0.94659 0.95654 1.20659 0.97322 1.00445 0.97743 0.88800 0.88840 0.88114 0.96066 0.95310 0.92638 0.92522 0.89154 0.92840 0.90448 0.88020 0.90417 0.88318 0.87110 0.78510 0.84896 0.81722 0.81598 0.82722 0.91565 0.89169 0.94683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.63 9.85 71.24 0.70 -1.93 16 2 C 0.14 5.31 6.85 42.10 0.29 5.60 16 3 C -0.30 -13.14 5.40 -20.14 -0.11 -13.25 16 4 C 0.59 26.72 7.45 86.66 0.65 27.36 16 5 O -0.59 -27.38 14.83 -4.06 -0.06 -27.44 16 6 N -0.58 -25.59 2.42 -806.03 -1.95 -27.55 16 7 C 0.25 12.17 4.46 85.63 0.38 12.55 16 8 C -0.52 -26.43 6.33 25.60 0.16 -26.27 16 9 H 0.05 2.82 6.29 -2.91 -0.02 2.81 16 10 C 0.03 1.69 5.36 84.65 0.45 2.14 16 11 N -0.91 -50.08 13.29 21.45 0.28 -49.80 16 12 Si 0.94 42.54 29.54 68.60 2.03 44.56 16 13 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 14 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 15 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 16 C 0.17 6.45 3.02 44.99 0.14 6.59 16 17 H 0.09 3.29 6.94 -2.39 -0.02 3.28 16 18 C -0.15 -4.85 7.66 71.98 0.55 -4.30 16 19 C -0.16 -5.82 4.63 -10.79 -0.05 -5.87 16 20 C -0.17 -5.57 9.57 30.60 0.29 -5.28 16 21 C -0.16 -4.45 9.90 30.60 0.30 -4.14 16 22 C 0.09 4.33 9.56 85.66 0.82 5.15 16 23 N -0.32 -13.90 10.92 -56.23 -0.61 -14.51 16 24 N -0.32 -11.60 2.98 -174.50 -0.52 -12.12 16 25 C 0.11 3.13 5.99 38.10 0.23 3.36 16 26 C -0.12 -2.75 8.47 22.39 0.19 -2.56 16 27 C -0.10 -1.52 10.04 22.25 0.22 -1.30 16 28 C -0.10 -1.34 10.04 22.29 0.22 -1.12 16 29 C -0.11 -1.90 9.70 22.25 0.22 -1.69 16 30 C -0.09 -2.26 5.90 -19.75 -0.12 -2.38 16 31 C -0.10 -3.02 9.09 71.24 0.65 -2.38 16 32 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.09 2.87 6.48 -2.38 -0.02 2.86 16 34 H 0.10 2.18 5.61 -2.39 -0.01 2.17 16 35 H 0.02 1.09 6.26 -2.39 -0.01 1.08 16 36 H 0.03 1.52 4.91 -2.39 -0.01 1.51 16 37 H 0.26 13.98 8.31 -92.71 -0.77 13.20 16 38 H 0.06 2.00 5.43 -2.39 -0.01 1.99 16 39 H 0.09 2.29 7.07 -2.39 -0.02 2.27 16 40 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.08 3.31 6.73 -2.39 -0.02 3.29 16 42 H 0.10 3.19 5.85 -2.39 -0.01 3.18 16 43 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 44 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 45 H 0.11 2.58 7.61 -2.39 -0.02 2.56 16 46 H 0.20 10.10 4.98 -2.91 -0.01 10.09 16 47 H 0.13 2.80 6.90 -2.91 -0.02 2.78 16 48 H 0.17 1.31 8.06 -2.91 -0.02 1.28 16 49 H 0.17 0.97 8.06 -2.91 -0.02 0.95 16 50 H 0.16 1.91 8.06 -2.91 -0.02 1.88 16 51 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 52 H 0.09 2.01 8.09 -2.39 -0.02 1.99 16 53 H 0.03 1.25 6.90 -2.39 -0.02 1.23 16 Total: -1.00 -66.81 413.81 6.30 -60.51 By element: Atomic # 1 Polarization: 35.10 SS G_CDS: 0.94 Total: 36.04 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: 6.19 Total: -9.70 kcal Atomic # 7 Polarization: -101.17 SS G_CDS: -2.80 Total: -103.98 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.06 Total: -27.44 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Total: -66.81 6.30 -60.51 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065588309.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.852 kcal (2) G-P(sol) polarization free energy of solvation -66.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds