Wall clock time and date at job start Tue Mar 31 2020 06:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35992 * 116.99449 * 2 1 4 4 C 1.38567 * 120.07553 * 0.02562 * 3 2 1 5 5 C 1.38249 * 119.99698 * 179.70736 * 4 3 2 6 6 C 1.38253 * 120.14815 * 0.55025 * 5 4 3 7 7 C 1.50696 * 119.92578 * 179.72625 * 6 5 4 8 8 H 1.09004 * 109.19979 * 90.14136 * 7 6 5 9 9 N 1.47071 * 109.53159 * 330.48732 * 7 6 5 10 10 C 1.39024 * 118.42600 * 284.43612 * 9 7 6 11 11 C 1.38415 * 121.98738 * 149.90072 * 10 9 7 12 12 C 1.38185 * 119.64575 * 180.49142 * 11 10 9 13 13 C 1.38608 * 120.56364 * 359.94692 * 12 11 10 14 14 C 1.37962 * 120.52118 * 359.93201 * 13 12 11 15 15 C 1.39253 * 119.52321 * 0.02562 * 14 13 12 16 16 C 1.47404 * 121.77443 * 180.17792 * 15 14 13 17 17 O 1.21608 * 120.37496 * 13.72034 * 16 15 14 18 18 N 1.34922 * 119.24892 * 193.74720 * 16 15 14 19 19 C 1.38244 * 120.14227 * 359.45097 * 6 5 4 20 20 C 1.38563 * 120.00144 * 0.27179 * 19 6 5 21 21 O 1.35996 * 120.06836 * 180.02562 * 20 19 6 22 22 C 1.42894 * 117.00350 * 0.02562 * 21 20 19 23 23 C 1.53005 * 109.46907 * 179.97438 * 22 21 20 24 24 C 1.50704 * 109.46545 * 179.97438 * 23 22 21 25 25 H 1.07995 * 120.00600 * 0.02562 * 24 23 22 26 26 C 1.37881 * 119.99648 * 179.97438 * 24 23 22 27 27 N 1.31514 * 120.00156 * 180.02562 * 26 24 23 28 28 Si 1.86803 * 120.00079 * 0.02562 * 26 24 23 29 29 H 1.48502 * 109.46929 * 89.99508 * 28 26 24 30 30 H 1.48498 * 109.47377 * 209.99840 * 28 26 24 31 31 H 1.48504 * 109.46835 * 329.99835 * 28 26 24 32 32 H 1.08997 * 109.47226 * 299.99955 * 1 2 3 33 33 H 1.08995 * 109.47526 * 60.00549 * 1 2 3 34 34 H 1.08999 * 109.46829 * 180.02562 * 1 2 3 35 35 H 1.07995 * 120.00367 * 359.97438 * 4 3 2 36 36 H 1.07998 * 119.92328 * 180.29591 * 5 4 3 37 37 H 0.96993 * 120.83760 * 104.26797 * 9 7 6 38 38 H 1.07991 * 120.17370 * 0.43698 * 11 10 9 39 39 H 1.08001 * 119.71383 * 179.97438 * 12 11 10 40 40 H 1.08001 * 119.74213 * 179.97438 * 13 12 11 41 41 H 1.08001 * 120.24028 * 180.02562 * 14 13 12 42 42 H 0.97001 * 119.39878 * 183.66839 * 18 16 15 43 43 H 1.08003 * 119.99522 * 180.29899 * 19 6 5 44 44 H 1.09000 * 109.46967 * 299.99475 * 22 21 20 45 45 H 1.09000 * 109.47292 * 59.99645 * 22 21 20 46 46 H 1.08991 * 109.47256 * 299.99574 * 23 22 21 47 47 H 1.08998 * 109.47019 * 60.00509 * 23 22 21 48 48 H 0.96999 * 119.99811 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2930 2.3748 0.0005 5 6 1.9222 3.6058 0.0067 6 6 3.3028 3.6800 0.0008 7 6 3.9834 5.0245 0.0012 8 1 4.1521 5.3405 1.0307 9 7 3.1262 6.0097 -0.6753 10 6 3.0473 5.9762 -2.0629 11 6 1.9087 6.3735 -2.7423 12 6 1.8795 6.3106 -4.1224 13 6 2.9802 5.8545 -4.8307 14 6 4.1236 5.4570 -4.1689 15 6 4.1672 5.5160 -2.7783 16 6 5.3643 5.1076 -2.0213 17 8 6.4261 4.9442 -2.5911 18 7 5.2684 4.9166 -0.6891 19 6 4.0601 2.5235 0.0002 20 6 3.4358 1.2865 -0.0002 21 8 4.1796 0.1479 -0.0002 22 6 5.6003 0.3009 0.0007 23 6 6.2618 -1.0787 0.0011 24 6 7.7602 -0.9172 0.0015 25 1 8.1969 0.0705 0.0018 26 6 8.5735 -2.0305 0.0024 27 7 9.8811 -1.8897 0.0032 28 14 7.8182 -3.7390 0.0026 29 1 7.6189 -4.1922 -1.3974 30 1 8.7265 -4.6818 0.7036 31 1 6.5086 -3.7012 0.7019 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5137 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 0.2145 2.3197 0.0005 36 1 1.3340 4.5115 0.0119 37 1 2.6256 6.6661 -0.1660 38 1 1.0476 6.7299 -2.1967 39 1 0.9915 6.6200 -4.6537 40 1 2.9427 5.8104 -5.9092 41 1 4.9788 5.1027 -4.7254 42 1 6.0655 4.7002 -0.1805 43 1 5.1384 2.5842 0.0005 44 1 5.9070 0.8510 -0.8889 45 1 5.9060 0.8504 0.8910 46 1 5.9551 -1.6284 0.8909 47 1 5.9562 -1.6284 -0.8891 48 1 10.4532 -2.6730 0.0035 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065606584.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:11 Heat of formation + Delta-G solvation = -38.678685 kcal Electronic energy + Delta-G solvation = -33213.191863 eV Core-core repulsion = 28813.119863 eV Total energy + Delta-G solvation = -4400.072000 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 368.157 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.19461 -40.24857 -38.35532 -38.22942 -37.75299 -35.93737 -33.45097 -33.31038 -31.33775 -31.10526 -30.64939 -29.88067 -29.12372 -27.35873 -25.42427 -24.96561 -24.30388 -22.52935 -22.28105 -21.59430 -20.45322 -19.68248 -18.53157 -18.26050 -17.85485 -17.31812 -16.77567 -16.32498 -16.16111 -15.97744 -15.60783 -15.35140 -15.14868 -15.05214 -14.61231 -14.45561 -14.33183 -14.20217 -13.96405 -13.93002 -13.60745 -12.93466 -12.91863 -12.83205 -12.55127 -12.24809 -12.02005 -11.94095 -11.76725 -11.51761 -11.24258 -11.07264 -11.01426 -10.80946 -10.48108 -10.16944 -10.05508 -9.97108 -9.78921 -9.48810 -9.30640 -9.19140 -8.69938 -8.58362 -8.02532 -7.66468 -6.09417 -4.10187 0.73592 1.20373 1.24407 1.42116 2.66947 2.88814 3.07508 3.26893 3.32124 3.38798 3.45066 3.66038 3.68806 3.70826 4.32603 4.42920 4.50766 4.60748 4.68008 4.75814 4.81886 4.92504 5.04874 5.07462 5.10477 5.15162 5.24641 5.25817 5.35616 5.38762 5.41539 5.64182 5.70460 5.87075 5.88293 5.93436 6.02059 6.12626 6.17107 6.26699 6.30783 6.42679 6.50493 6.63374 6.66423 6.74866 7.02152 7.08262 7.24803 7.26764 7.29250 7.66395 7.92630 8.12607 8.42767 8.91520 9.50820 11.03086 Molecular weight = 368.16amu Principal moments of inertia in cm(-1) A = 0.008847 B = 0.003009 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3164.272757 B = 9304.161991 C =11215.352459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.303 6.303 3 C 0.099 3.901 4 C -0.177 4.177 5 C -0.099 4.099 6 C -0.130 4.130 7 C 0.431 3.569 8 H 0.116 0.884 9 N -0.747 5.747 10 C 0.238 3.762 11 C -0.185 4.185 12 C -0.057 4.057 13 C -0.173 4.173 14 C -0.021 4.021 15 C -0.195 4.195 16 C 0.575 3.425 17 O -0.529 6.529 18 N -0.734 5.734 19 C -0.154 4.154 20 C 0.118 3.882 21 O -0.307 6.307 22 C 0.072 3.928 23 C -0.007 4.007 24 C -0.526 4.526 25 H 0.075 0.925 26 C 0.073 3.927 27 N -0.897 5.897 28 Si 0.879 3.121 29 H -0.275 1.275 30 H -0.286 1.286 31 H -0.263 1.263 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.098 0.902 35 H 0.131 0.869 36 H 0.123 0.877 37 H 0.413 0.587 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.135 0.865 42 H 0.412 0.588 43 H 0.138 0.862 44 H 0.056 0.944 45 H 0.055 0.945 46 H 0.028 0.972 47 H 0.023 0.977 48 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.903 19.218 -1.349 30.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.216 6.216 3 C 0.053 3.947 4 C -0.196 4.196 5 C -0.118 4.118 6 C -0.133 4.133 7 C 0.239 3.761 8 H 0.134 0.866 9 N -0.382 5.382 10 C 0.135 3.865 11 C -0.207 4.207 12 C -0.076 4.076 13 C -0.193 4.193 14 C -0.041 4.041 15 C -0.202 4.202 16 C 0.363 3.637 17 O -0.405 6.405 18 N -0.390 5.390 19 C -0.174 4.174 20 C 0.071 3.929 21 O -0.220 6.220 22 C -0.002 4.002 23 C -0.045 4.045 24 C -0.564 4.564 25 H 0.093 0.907 26 C -0.130 4.130 27 N -0.536 5.536 28 Si 0.706 3.294 29 H -0.200 1.200 30 H -0.212 1.212 31 H -0.187 1.187 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.116 0.884 35 H 0.149 0.851 36 H 0.141 0.859 37 H 0.251 0.749 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.153 0.847 42 H 0.250 0.750 43 H 0.156 0.844 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.046 0.954 47 H 0.042 0.958 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -23.157 18.568 -1.693 29.731 hybrid contribution -0.313 -0.515 0.448 0.751 sum -23.470 18.053 -1.245 29.636 Atomic orbital electron populations 1.23033 0.79047 1.03841 1.00855 1.86242 1.20581 1.25959 1.88815 1.18380 0.89404 0.85150 1.01784 1.20934 0.99572 0.91448 1.07657 1.20404 0.93171 0.96791 1.01467 1.20168 0.94021 0.94379 1.04728 1.19192 0.78410 0.85545 0.92935 0.86618 1.44622 1.52583 1.37715 1.03304 1.17792 0.91730 0.93304 0.83635 1.20591 0.96532 1.08893 0.94643 1.21138 0.97940 0.95053 0.93436 1.20994 0.93758 1.04299 1.00228 1.21059 0.97878 0.92966 0.92163 1.19662 0.93766 1.12280 0.94479 1.18024 0.88237 0.75779 0.81620 1.90858 1.30124 1.50953 1.68613 1.46291 1.11040 1.73287 1.08387 1.20916 1.00839 0.90360 1.05277 1.18346 0.88449 0.86927 0.99158 1.86239 1.20968 1.27390 1.87438 1.23102 0.74677 1.02149 1.00306 1.19565 0.95926 0.91047 0.97921 1.20838 0.87918 0.95320 1.52290 0.90718 1.24923 0.94654 0.99246 0.94128 1.69896 1.03050 1.30369 1.50235 0.86773 0.79691 0.84111 0.78802 1.20049 1.21209 1.18712 0.92932 0.92939 0.88353 0.85076 0.85872 0.74943 0.85489 0.85647 0.85572 0.84723 0.75008 0.84391 0.92604 0.92629 0.95392 0.95839 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.30 -4.61 10.28 -34.22 -0.35 -4.96 16 3 C 0.10 1.49 6.70 -39.12 -0.26 1.23 16 4 C -0.18 -2.03 9.04 -39.46 -0.36 -2.38 16 5 C -0.10 -1.02 9.26 -39.57 -0.37 -1.39 16 6 C -0.13 -1.48 5.46 -104.62 -0.57 -2.06 16 7 C 0.43 3.83 4.27 -128.42 -0.55 3.28 16 8 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 9 N -0.75 -5.49 4.42 -55.91 -0.25 -5.73 16 10 C 0.24 2.32 6.23 -83.63 -0.52 1.80 16 11 C -0.18 -1.45 10.02 -39.54 -0.40 -1.85 16 12 C -0.06 -0.44 10.03 -39.46 -0.40 -0.84 16 13 C -0.17 -1.60 10.02 -39.55 -0.40 -2.00 16 14 C -0.02 -0.25 9.66 -39.31 -0.38 -0.63 16 15 C -0.19 -2.49 5.83 -104.88 -0.61 -3.10 16 16 C 0.57 8.53 7.87 -12.46 -0.10 8.43 16 17 O -0.53 -9.90 17.45 5.27 0.09 -9.81 16 18 N -0.73 -8.53 4.14 -58.96 -0.24 -8.77 16 19 C -0.15 -2.28 8.30 -39.46 -0.33 -2.61 16 20 C 0.12 2.05 6.70 -39.12 -0.26 1.79 16 21 O -0.31 -6.34 9.92 -34.23 -0.34 -6.68 16 22 C 0.07 1.53 4.68 37.16 0.17 1.71 16 23 C -0.01 -0.18 4.41 -27.88 -0.12 -0.30 16 24 C -0.53 -15.18 9.66 -34.44 -0.33 -15.51 16 25 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 26 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 27 N -0.90 -27.80 13.96 55.43 0.77 -27.02 16 28 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 16 29 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 30 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 31 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 32 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 33 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.13 1.13 6.30 -52.49 -0.33 0.80 16 36 H 0.12 0.93 7.38 -52.49 -0.39 0.54 16 37 H 0.41 1.74 8.96 -40.82 -0.37 1.37 16 38 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 39 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.13 1.66 7.84 -52.49 -0.41 1.24 16 42 H 0.41 4.47 8.83 -40.82 -0.36 4.11 16 43 H 0.14 2.10 5.57 -52.48 -0.29 1.80 16 44 H 0.06 1.19 7.66 -51.93 -0.40 0.79 16 45 H 0.06 1.12 7.66 -51.93 -0.40 0.72 16 46 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 47 H 0.02 0.59 7.57 -51.93 -0.39 0.20 16 48 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 398.87 15.07 6.01 6.01 Total: -1.00 -37.08 398.87 -10.06 -47.14 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -6.21 Total: 3.56 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -4.88 Total: -11.15 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: 0.28 Total: -41.53 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.60 Total: -21.46 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.08 -10.06 -47.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065606584.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.466 kcal (2) G-P(sol) polarization free energy of solvation -37.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds