Wall clock time and date at job start Tue Mar 31 2020 06:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38168 * 120.03163 * 2 1 4 4 C 1.38239 * 120.05420 * 180.29943 * 3 2 1 5 5 C 1.38287 * 120.11518 * 359.68046 * 4 3 2 6 6 C 1.38116 * 120.05320 * 359.97438 * 5 4 3 7 7 C 1.38716 * 120.02820 * 179.68207 * 2 1 3 8 8 O 1.35899 * 120.05303 * 359.97438 * 7 2 1 9 9 C 1.42907 * 116.99660 * 179.72716 * 8 7 2 10 10 C 1.53004 * 109.46943 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.47076 * 179.97438 * 10 9 8 12 12 C 1.50705 * 109.47119 * 179.97438 * 11 10 9 13 13 O 1.21284 * 119.99679 * 359.97438 * 12 11 10 14 14 N 1.34772 * 119.99725 * 179.97438 * 12 11 10 15 15 C 1.46497 * 120.00210 * 0.02562 * 14 12 11 16 16 C 1.50702 * 109.46673 * 252.75285 * 15 14 12 17 17 H 1.08004 * 120.00117 * 234.30133 * 16 15 14 18 18 C 1.37871 * 119.99962 * 54.31212 * 16 15 14 19 19 N 1.31513 * 120.00141 * 4.81880 * 18 16 15 20 20 Si 1.86804 * 119.99918 * 184.82351 * 18 16 15 21 21 H 1.48501 * 109.47023 * 89.99482 * 20 18 16 22 22 H 1.48504 * 109.47070 * 209.99434 * 20 18 16 23 23 H 1.48500 * 109.47235 * 329.99418 * 20 18 16 24 24 C 1.46499 * 119.99801 * 179.97438 * 14 12 11 25 25 C 1.50697 * 109.47535 * 274.73306 * 24 14 12 26 26 C 1.38671 * 120.41651 * 274.86110 * 25 24 14 27 27 C 1.38627 * 118.42102 * 179.78281 * 26 25 24 28 28 C 1.38224 * 119.16103 * 0.51161 * 27 26 25 29 29 N 1.31854 * 120.76429 * 359.72882 * 28 27 26 30 30 C 1.31880 * 121.72389 * 359.97438 * 29 28 27 31 31 H 1.08998 * 109.47191 * 270.31890 * 1 2 3 32 32 H 1.08994 * 109.47260 * 30.32022 * 1 2 3 33 33 H 1.08999 * 109.47177 * 150.31943 * 1 2 3 34 34 H 1.08002 * 119.96878 * 0.02562 * 3 2 1 35 35 H 1.08006 * 119.94149 * 179.70250 * 4 3 2 36 36 H 1.07999 * 119.97259 * 180.02562 * 5 4 3 37 37 H 1.08000 * 120.02413 * 180.02562 * 6 5 4 38 38 H 1.08993 * 109.47213 * 60.00314 * 9 8 7 39 39 H 1.08998 * 109.47398 * 299.99458 * 9 8 7 40 40 H 1.09006 * 109.47201 * 59.99688 * 10 9 8 41 41 H 1.09002 * 109.47173 * 299.99927 * 10 9 8 42 42 H 1.08995 * 109.46875 * 59.99888 * 11 10 9 43 43 H 1.09002 * 109.47085 * 300.00012 * 11 10 9 44 44 H 1.08999 * 109.46879 * 132.75768 * 15 14 12 45 45 H 1.08992 * 109.47472 * 12.75567 * 15 14 12 46 46 H 0.97007 * 120.00110 * 175.00739 * 19 18 16 47 47 H 1.09006 * 109.47094 * 34.73214 * 24 14 12 48 48 H 1.08997 * 109.47591 * 154.72534 * 24 14 12 49 49 H 1.08007 * 120.79129 * 0.02562 * 26 25 24 50 50 H 1.08005 * 120.41945 * 180.22293 * 27 26 25 51 51 H 1.08006 * 119.62110 * 179.74691 * 28 27 26 52 52 H 1.08001 * 119.62014 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1962 0.0000 4 6 3.5809 1.1967 -0.0063 5 6 4.2752 0.0008 -0.0059 6 6 3.5886 -1.1976 0.0013 7 6 2.2012 -1.2010 0.0067 8 8 1.5234 -2.3788 0.0137 9 6 2.3034 -3.5762 0.0143 10 6 1.3732 -4.7909 0.0232 11 6 2.2083 -6.0729 0.0232 12 6 1.2920 -7.2693 0.0327 13 8 0.0894 -7.1121 0.0393 14 7 1.8090 -8.5140 0.0337 15 6 3.2616 -8.7038 0.0263 16 6 3.6974 -9.1909 -1.3316 17 1 4.2791 -10.0967 -1.4194 18 6 3.3539 -8.4801 -2.4619 19 7 2.7283 -7.3287 -2.3499 20 14 3.7768 -9.1526 -4.1526 21 1 2.6575 -9.9956 -4.6443 22 1 3.9971 -8.0247 -5.0931 23 1 5.0121 -9.9722 -4.0646 24 6 0.9183 -9.6770 0.0435 25 6 0.5288 -9.9997 1.4631 26 6 1.3468 -10.7940 2.2523 27 6 0.9506 -11.0608 3.5537 28 6 -0.2434 -10.5389 4.0147 29 7 -0.9987 -9.7913 3.2341 30 6 -0.6505 -9.5121 1.9931 31 1 -0.3633 0.0057 1.0276 32 1 -0.3633 0.8870 -0.5188 33 1 -0.3633 -0.8928 -0.5089 34 1 1.6585 2.1315 0.0004 35 1 4.1196 2.1329 -0.0111 36 1 5.3552 0.0039 -0.0103 37 1 4.1314 -2.1313 0.0021 38 1 2.9362 -3.5972 0.9014 39 1 2.9282 -3.6033 -0.8785 40 1 0.7399 -4.7702 -0.8638 41 1 0.7487 -4.7637 0.9162 42 1 2.8418 -6.0938 0.9099 43 1 2.8325 -6.0998 -0.8700 44 1 3.5356 -9.4403 0.7816 45 1 3.7530 -7.7564 0.2474 46 1 2.5510 -6.7942 -3.1397 47 1 0.0231 -9.4540 -0.5371 48 1 1.4323 -10.5321 -0.3955 49 1 2.2726 -11.1920 1.8636 50 1 1.5649 -11.6727 4.1977 51 1 -0.5612 -10.7455 5.0260 52 1 -1.2950 -8.8959 1.3837 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069324417.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:31 Heat of formation + Delta-G solvation = -34.182886 kcal Electronic energy + Delta-G solvation = -32851.005987 eV Core-core repulsion = 28586.962035 eV Total energy + Delta-G solvation = -4264.043953 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 368.189 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.28454 -41.14608 -40.18859 -38.49368 -36.78371 -35.08330 -34.29908 -33.57854 -33.25438 -32.47337 -30.90826 -29.35704 -28.82245 -27.63137 -26.69629 -24.82060 -24.29477 -23.98231 -22.85183 -22.58802 -21.80054 -19.87892 -18.95311 -18.43021 -17.98203 -17.65782 -17.37059 -17.05057 -16.95368 -16.69476 -16.53715 -16.29996 -16.19716 -15.63783 -15.28361 -14.95404 -14.76007 -14.49998 -14.32474 -14.28211 -14.01409 -13.95330 -13.82745 -13.70275 -13.56685 -13.16970 -13.08019 -12.94542 -12.88053 -12.70457 -12.62117 -12.40468 -12.25522 -12.18789 -12.10829 -11.73026 -11.68399 -11.61700 -11.43945 -10.79040 -10.62593 -10.45815 -10.34954 -9.86749 -9.76001 -9.09740 -9.05857 -8.07115 -6.32798 0.18467 0.37628 0.38584 0.50931 1.40766 1.47740 1.52818 2.12372 2.25016 2.40844 2.64082 2.82663 3.00933 3.28629 3.57306 3.82877 3.88048 3.93338 3.95164 3.98730 4.03724 4.12480 4.16915 4.21911 4.24084 4.32579 4.42281 4.46770 4.54415 4.58846 4.64876 4.72594 4.78843 4.80000 4.81304 4.87318 4.89924 4.92883 4.96497 4.99054 5.21485 5.27626 5.31041 5.31952 5.43411 5.45084 5.51882 5.54377 5.60825 5.81583 5.84282 5.92879 6.03814 6.18355 6.48150 6.74629 7.04303 7.07510 7.42045 7.76888 8.84013 Molecular weight = 368.19amu Principal moments of inertia in cm(-1) A = 0.007849 B = 0.002572 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3566.605700 B =10882.008578 C =13396.931431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.141 4.141 3 C -0.087 4.087 4 C -0.158 4.158 5 C -0.092 4.092 6 C -0.220 4.220 7 C 0.102 3.898 8 O -0.330 6.330 9 C 0.074 3.926 10 C -0.081 4.081 11 C -0.137 4.137 12 C 0.541 3.459 13 O -0.620 6.620 14 N -0.577 5.577 15 C 0.229 3.771 16 C -0.549 4.549 17 H 0.063 0.937 18 C 0.043 3.957 19 N -0.888 5.888 20 Si 0.945 3.055 21 H -0.289 1.289 22 H -0.289 1.289 23 H -0.266 1.266 24 C 0.171 3.829 25 C -0.151 4.151 26 C -0.066 4.066 27 C -0.164 4.164 28 C 0.082 3.918 29 N -0.515 5.515 30 C 0.099 3.901 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.050 0.950 34 H 0.154 0.846 35 H 0.151 0.849 36 H 0.146 0.854 37 H 0.131 0.869 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.048 0.952 41 H 0.052 0.948 42 H 0.079 0.921 43 H 0.146 0.854 44 H 0.042 0.958 45 H 0.042 0.958 46 H 0.262 0.738 47 H 0.050 0.950 48 H 0.090 0.910 49 H 0.150 0.850 50 H 0.173 0.827 51 H 0.185 0.815 52 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.652 7.636 8.340 11.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.141 4.141 3 C -0.104 4.104 4 C -0.176 4.176 5 C -0.110 4.110 6 C -0.239 4.239 7 C 0.056 3.944 8 O -0.245 6.245 9 C 0.000 4.000 10 C -0.119 4.119 11 C -0.177 4.177 12 C 0.332 3.668 13 O -0.505 6.505 14 N -0.306 5.306 15 C 0.109 3.891 16 C -0.588 4.588 17 H 0.081 0.919 18 C -0.160 4.160 19 N -0.526 5.526 20 Si 0.773 3.227 21 H -0.216 1.216 22 H -0.215 1.215 23 H -0.191 1.191 24 C 0.047 3.953 25 C -0.154 4.154 26 C -0.093 4.093 27 C -0.183 4.183 28 C -0.075 4.075 29 N -0.224 5.224 30 C -0.057 4.057 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.069 0.931 34 H 0.171 0.829 35 H 0.169 0.831 36 H 0.164 0.836 37 H 0.149 0.851 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.163 0.837 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.072 0.928 47 H 0.069 0.931 48 H 0.108 0.892 49 H 0.167 0.833 50 H 0.190 0.810 51 H 0.202 0.798 52 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.974 8.084 8.544 11.927 hybrid contribution 0.917 -0.893 -1.771 2.185 sum 2.890 7.191 6.773 10.292 Atomic orbital electron populations 1.20601 0.90097 1.02787 1.02491 1.19645 0.97342 0.90769 1.06379 1.21219 0.94683 0.96879 0.97657 1.21415 0.94238 0.98925 1.03024 1.21276 1.01036 0.91505 0.97148 1.21507 0.92776 1.00751 1.08842 1.19283 0.91389 0.85883 0.97796 1.86027 1.36936 1.12918 1.88599 1.22731 0.93778 0.81625 1.01909 1.20991 0.97427 0.91751 1.01748 1.21949 0.98850 0.90223 1.06653 1.20513 0.87873 0.85411 0.72978 1.90498 1.17764 1.87020 1.55264 1.48256 1.08249 1.03712 1.70374 1.19368 0.76746 0.97622 0.95362 1.21768 1.33917 1.10608 0.92461 0.91913 1.25512 0.93693 0.94963 1.01782 1.69637 1.40711 1.12309 1.29913 0.85767 0.78296 0.77966 0.80692 1.21563 1.21452 1.19084 1.19829 0.94191 0.90145 0.91180 1.21357 0.96275 0.99164 0.98643 1.21800 0.98864 0.94603 0.94022 1.22488 0.98169 1.01510 0.96163 1.23364 0.91383 0.92512 1.00218 1.67681 1.34901 1.14531 1.05306 1.22556 0.95059 0.96335 0.91753 0.91135 0.89629 0.93108 0.82877 0.83088 0.83618 0.85126 0.90836 0.91676 0.93319 0.92899 0.90314 0.83744 0.94004 0.94024 0.92793 0.93115 0.89176 0.83267 0.80996 0.79810 0.84964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.38 9.79 71.24 0.70 -1.68 16 2 C -0.14 -3.62 5.89 -19.77 -0.12 -3.74 16 3 C -0.09 -1.72 9.70 22.25 0.22 -1.51 16 4 C -0.16 -2.90 10.04 22.28 0.22 -2.67 16 5 C -0.09 -1.91 10.04 22.25 0.22 -1.68 16 6 C -0.22 -5.74 9.04 22.36 0.20 -5.54 16 7 C 0.10 3.03 6.66 22.51 0.15 3.18 16 8 O -0.33 -11.23 9.18 -92.41 -0.85 -12.08 16 9 C 0.07 2.41 4.74 71.98 0.34 2.75 16 10 C -0.08 -3.14 4.87 30.60 0.15 -2.99 16 11 C -0.14 -5.61 3.80 29.85 0.11 -5.50 16 12 C 0.54 25.13 6.34 87.66 0.56 25.68 16 13 O -0.62 -32.05 15.09 -3.04 -0.05 -32.09 16 14 N -0.58 -24.99 2.11 -830.52 -1.75 -26.74 16 15 C 0.23 9.56 5.65 85.63 0.48 10.04 16 16 C -0.55 -25.18 9.11 25.60 0.23 -24.95 16 17 H 0.06 2.82 7.82 -2.91 -0.02 2.80 16 18 C 0.04 2.02 5.33 84.65 0.45 2.47 16 19 N -0.89 -43.63 8.26 21.44 0.18 -43.45 16 20 Si 0.95 39.42 29.54 68.60 2.03 41.44 16 21 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 22 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 23 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 24 C 0.17 6.84 5.43 85.63 0.46 7.30 16 25 C -0.15 -5.31 5.44 -19.77 -0.11 -5.42 16 26 C -0.07 -1.86 9.88 22.47 0.22 -1.64 16 27 C -0.16 -3.73 10.11 22.36 0.23 -3.50 16 28 C 0.08 2.12 11.18 84.69 0.95 3.06 16 29 N -0.52 -17.62 10.36 -195.84 -2.03 -19.65 16 30 C 0.10 3.73 10.67 84.67 0.90 4.63 16 31 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.08 1.50 8.09 -2.39 -0.02 1.49 16 33 H 0.05 1.38 7.53 -2.39 -0.02 1.36 16 34 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 35 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 36 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 37 H 0.13 3.24 6.30 -2.91 -0.02 3.22 16 38 H 0.07 2.11 7.66 -2.39 -0.02 2.09 16 39 H 0.07 2.08 7.66 -2.39 -0.02 2.06 16 40 H 0.05 2.11 8.10 -2.38 -0.02 2.10 16 41 H 0.05 2.12 8.10 -2.39 -0.02 2.10 16 42 H 0.08 2.88 7.55 -2.39 -0.02 2.86 16 43 H 0.15 6.40 4.96 -2.39 -0.01 6.38 16 44 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.04 1.76 5.92 -2.39 -0.01 1.74 16 46 H 0.26 12.90 8.32 -92.70 -0.77 12.12 16 47 H 0.05 2.24 7.49 -2.38 -0.02 2.23 16 48 H 0.09 3.43 7.79 -2.39 -0.02 3.41 16 49 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 50 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 51 H 0.18 3.25 8.06 -2.91 -0.02 3.23 16 52 H 0.13 5.50 7.68 -2.91 -0.02 5.48 16 Total: -1.00 -62.64 425.19 5.02 -57.61 By element: Atomic # 1 Polarization: 35.72 SS G_CDS: 0.91 Total: 36.63 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: 6.58 Total: -1.68 kcal Atomic # 7 Polarization: -86.24 SS G_CDS: -3.60 Total: -89.85 kcal Atomic # 8 Polarization: -43.27 SS G_CDS: -0.89 Total: -44.17 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 2.03 Total: 41.44 kcal Total: -62.64 5.02 -57.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069324417.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.431 kcal (2) G-P(sol) polarization free energy of solvation -62.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds