Wall clock time and date at job start Tue Mar 31 2020 07:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46856 * 2 1 4 4 N 1.46504 * 109.47029 * 179.97438 * 3 2 1 5 5 C 1.36900 * 120.00132 * 270.00223 * 4 3 2 6 6 H 1.07993 * 119.99728 * 138.85627 * 5 4 3 7 7 C 1.39024 * 119.99795 * 318.85628 * 5 4 3 8 8 N 1.31386 * 119.99634 * 161.97663 * 7 5 4 9 9 Si 1.86794 * 120.00218 * 341.97518 * 7 5 4 10 10 H 1.48502 * 109.47086 * 95.26445 * 9 7 5 11 11 H 1.48494 * 109.47214 * 215.26589 * 9 7 5 12 12 H 1.48505 * 109.47266 * 335.26375 * 9 7 5 13 13 C 1.34773 * 119.99534 * 90.00050 * 4 3 2 14 14 O 1.21620 * 120.00761 * 3.42036 * 13 4 3 15 15 C 1.47501 * 119.99828 * 183.41861 * 13 4 3 16 16 C 1.39773 * 120.10025 * 327.63699 * 15 13 4 17 17 C 1.37786 * 119.94887 * 180.02562 * 16 15 13 18 18 Br 1.89101 * 119.86956 * 180.02562 * 17 16 15 19 19 C 1.39101 * 120.25887 * 0.02562 * 17 16 15 20 20 C 1.39240 * 120.05155 * 359.85426 * 19 17 16 21 21 C 1.38290 * 119.97581 * 0.19012 * 20 19 17 22 22 O 1.36148 * 120.75802 * 180.21288 * 20 19 17 23 23 C 1.43176 * 116.69908 * 342.74581 * 22 20 19 24 24 C 1.53471 * 108.22878 * 46.21523 * 23 22 20 25 25 O 1.35989 * 119.22975 * 179.64938 * 19 17 16 26 26 H 1.09003 * 109.47279 * 299.99562 * 1 2 3 27 27 H 1.08997 * 109.47394 * 60.00266 * 1 2 3 28 28 H 1.09007 * 109.46998 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46597 * 240.00250 * 2 1 3 30 30 H 1.08996 * 109.47108 * 120.00460 * 2 1 3 31 31 H 1.09003 * 109.46818 * 60.00156 * 3 2 1 32 32 H 1.09003 * 109.47266 * 300.00275 * 3 2 1 33 33 H 0.97002 * 119.99393 * 185.00915 * 8 7 5 34 34 H 1.07998 * 120.02856 * 0.06587 * 16 15 13 35 35 H 1.07999 * 120.02040 * 179.91153 * 21 20 19 36 36 H 1.08999 * 109.70849 * 165.90055 * 23 22 20 37 37 H 1.08999 * 109.71096 * 286.52952 * 23 22 20 38 38 H 1.08999 * 109.70291 * 180.50800 * 24 23 22 39 39 H 1.08994 * 109.74933 * 59.90692 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1890 1.4427 1.1865 6 1 5.0689 0.8274 1.3023 7 6 3.7509 2.2350 2.2415 8 7 4.1643 1.9883 3.4640 9 14 2.5744 3.6501 1.9211 10 1 1.1797 3.1970 2.1549 11 1 2.8903 4.7739 2.8389 12 1 2.7180 4.1045 0.5146 13 6 4.1792 1.4424 -1.1663 14 8 3.5732 1.5051 -2.2189 15 6 5.6523 1.3663 -1.1669 16 6 6.3845 1.9459 -0.1270 17 6 7.7605 1.8734 -0.1309 18 35 8.7490 2.6578 1.2775 19 6 8.4253 1.2255 -1.1669 20 6 7.7011 0.6440 -2.2042 21 6 6.3199 0.7141 -2.2067 22 8 8.3368 0.0026 -3.2231 23 6 9.7330 0.2761 -3.3838 24 6 10.3993 0.1988 -2.0034 25 8 9.7841 1.1726 -1.1534 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6765 1.9563 0.8900 32 1 1.6765 1.9564 -0.8900 33 1 3.8034 2.4936 4.2092 34 1 5.8723 2.4497 0.6793 35 1 5.7575 0.2645 -3.0117 36 1 10.1783 -0.4636 -4.0490 37 1 9.8664 1.2742 -3.8010 38 1 11.4640 0.4125 -2.0968 39 1 10.2599 -0.7969 -1.5825 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069415241.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:45 Heat of formation + Delta-G solvation = -62.026070 kcal Electronic energy + Delta-G solvation = -25827.842570 eV Core-core repulsion = 21976.345860 eV Total energy + Delta-G solvation = -3851.496710 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 369.041 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.13294 -39.31742 -37.19339 -36.99190 -35.40829 -33.16128 -31.84052 -31.67925 -31.04509 -28.76023 -28.54917 -26.01622 -25.38573 -24.47913 -22.46814 -21.37630 -21.04731 -19.36550 -18.54563 -17.65119 -17.13992 -16.94244 -15.89702 -15.38638 -15.21143 -14.96756 -14.37286 -14.26296 -14.16873 -14.09085 -13.72668 -13.51790 -13.41851 -12.94149 -12.70859 -12.51406 -12.03604 -11.76183 -11.59088 -11.53642 -11.36126 -11.03321 -10.99558 -10.94486 -10.51676 -10.37260 -10.11702 -10.02594 -9.82233 -9.78568 -9.30538 -8.77718 -8.17259 -7.85404 -7.81754 -6.55412 -4.21654 1.20854 1.55213 2.03214 2.96791 3.01219 3.16455 3.21290 3.23693 3.49906 4.00617 4.12669 4.20826 4.31686 4.73927 4.79620 4.81257 4.85978 5.16032 5.34753 5.39184 5.53374 5.58283 5.64626 5.78068 5.81869 5.97521 6.02667 6.19084 6.26418 6.32079 6.39294 6.39727 6.69811 6.78354 6.84894 6.89062 7.03248 7.26916 7.47847 7.94519 8.12874 8.79326 9.17948 9.52315 10.49863 Molecular weight = 369.04amu Principal moments of inertia in cm(-1) A = 0.011510 B = 0.004630 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.988741 B = 6046.305060 C = 7995.818843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C 0.102 3.898 4 N -0.452 5.452 5 C -0.357 4.357 6 H 0.112 0.888 7 C 0.071 3.929 8 N -0.847 5.847 9 Si 0.874 3.126 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.258 1.258 13 C 0.523 3.477 14 O -0.590 6.590 15 C -0.092 4.092 16 C -0.031 4.031 17 C -0.104 4.104 18 Br -0.037 7.037 19 C 0.082 3.918 20 C 0.032 3.968 21 C -0.056 4.056 22 O -0.305 6.305 23 C 0.021 3.979 24 C 0.019 3.981 25 O -0.295 6.295 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.279 0.721 34 H 0.186 0.814 35 H 0.142 0.858 36 H 0.119 0.881 37 H 0.076 0.924 38 H 0.120 0.880 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.589 -1.755 -6.211 11.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C -0.020 4.020 4 N -0.170 5.170 5 C -0.484 4.484 6 H 0.129 0.871 7 C -0.138 4.138 8 N -0.480 5.480 9 Si 0.701 3.299 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.182 1.182 13 C 0.312 3.688 14 O -0.475 6.475 15 C -0.097 4.097 16 C -0.051 4.051 17 C -0.184 4.184 18 Br 0.048 6.952 19 C 0.035 3.965 20 C -0.013 4.013 21 C -0.076 4.076 22 O -0.220 6.220 23 C -0.055 4.055 24 C -0.057 4.057 25 O -0.209 6.209 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.203 0.797 35 H 0.160 0.840 36 H 0.137 0.863 37 H 0.094 0.906 38 H 0.138 0.862 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.745 -1.351 -5.971 11.509 hybrid contribution -0.514 0.334 -0.221 0.652 sum 9.232 -1.017 -6.192 11.163 Atomic orbital electron populations 1.21709 0.96255 1.01153 1.01421 1.21763 0.94875 0.97706 1.02633 1.21694 0.82072 0.96922 1.01332 1.43567 1.04199 1.63799 1.05466 1.19165 1.14194 1.26535 0.88468 0.87103 1.25366 0.96775 0.96863 0.94817 1.69657 1.40898 1.39055 0.98435 0.86935 0.80683 0.82506 0.79757 1.19799 1.21130 1.18196 1.17940 0.86104 0.80681 0.84034 1.90657 1.69591 1.55715 1.31570 1.19631 0.94435 1.00823 0.94779 1.22371 0.89815 0.95020 0.97859 1.20983 0.94237 1.08177 0.95005 1.96630 1.72970 1.81112 1.44500 1.18617 0.82923 1.01009 0.93977 1.18414 0.92036 1.01966 0.88881 1.20504 0.90116 0.98126 0.98863 1.86329 1.22694 1.64875 1.48096 1.23583 0.80697 1.03590 0.97632 1.23631 0.98637 0.93096 0.90287 1.86371 1.15905 1.55476 1.63105 0.92975 0.92974 0.92958 0.92043 0.91078 0.91641 0.91017 0.91072 0.79718 0.83980 0.86307 0.90629 0.86202 0.90436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.91 37.16 0.37 -1.87 16 2 C -0.13 -2.45 6.26 -26.73 -0.17 -2.62 16 3 C 0.10 2.18 4.20 -4.04 -0.02 2.17 16 4 N -0.45 -10.51 2.12 -116.00 -0.25 -10.75 16 5 C -0.36 -8.69 6.55 -15.00 -0.10 -8.79 16 6 H 0.11 2.87 6.44 -52.49 -0.34 2.53 16 7 C 0.07 1.76 5.30 -17.45 -0.09 1.67 16 8 N -0.85 -21.86 13.95 55.50 0.77 -21.08 16 9 Si 0.87 19.51 24.92 -169.99 -4.24 15.28 16 10 H -0.27 -5.81 6.74 56.52 0.38 -5.43 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.26 -5.90 7.11 56.52 0.40 -5.50 16 13 C 0.52 12.16 7.39 -12.49 -0.09 12.07 16 14 O -0.59 -14.61 16.32 5.26 0.09 -14.53 16 15 C -0.09 -1.95 5.52 -104.99 -0.58 -2.53 16 16 C -0.03 -0.64 7.47 -39.17 -0.29 -0.93 16 17 C -0.10 -1.96 6.23 -39.43 -0.25 -2.21 16 18 Br -0.04 -0.65 33.09 -68.01 -2.25 -2.90 16 19 C 0.08 1.43 6.50 -38.89 -0.25 1.18 16 20 C 0.03 0.55 6.48 -39.19 -0.25 0.30 16 21 C -0.06 -1.06 9.51 -39.01 -0.37 -1.43 16 22 O -0.30 -4.52 10.42 -32.97 -0.34 -4.86 16 23 C 0.02 0.21 7.26 37.40 0.27 0.48 16 24 C 0.02 0.20 7.26 37.40 0.27 0.47 16 25 O -0.29 -4.40 9.68 -32.46 -0.31 -4.71 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.07 1.41 3.42 -51.93 -0.18 1.24 16 32 H 0.07 1.52 7.38 -51.93 -0.38 1.14 16 33 H 0.28 6.76 8.31 -40.82 -0.34 6.42 16 34 H 0.19 4.16 5.40 -52.49 -0.28 3.87 16 35 H 0.14 2.60 7.95 -52.49 -0.42 2.18 16 36 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 339.48 15.07 5.12 5.12 Total: -1.00 -28.41 339.48 -7.53 -35.93 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -4.56 Total: 4.55 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -1.55 Total: -2.04 kcal Atomic # 7 Polarization: -32.36 SS G_CDS: 0.53 Total: -31.84 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.57 Total: -24.10 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -4.24 Total: 15.28 kcal Atomic # 35 Polarization: -0.65 SS G_CDS: -2.25 Total: -2.90 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.41 -7.53 -35.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069415241.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.094 kcal (2) G-P(sol) polarization free energy of solvation -28.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds