Wall clock time and date at job start Tue Mar 31 2020 06:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39283 * 119.05884 * 2 1 4 4 C 1.38869 * 119.57919 * 180.02562 * 3 2 1 5 5 C 1.47910 * 121.10791 * 180.02562 * 4 3 2 6 6 O 1.21542 * 120.00304 * 235.01288 * 5 4 3 7 7 N 1.34780 * 119.99871 * 55.00838 * 5 4 3 8 8 C 1.46498 * 120.00324 * 185.52737 * 7 5 4 9 9 C 1.50693 * 109.47157 * 89.99990 * 8 7 5 10 10 H 1.08002 * 120.00155 * 0.02562 * 9 8 7 11 11 C 1.37881 * 120.00028 * 179.97438 * 9 8 7 12 12 N 1.31508 * 120.00071 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00134 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46926 * 60.00167 * 13 11 9 15 15 H 1.48494 * 109.47304 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46932 * 300.00618 * 13 11 9 17 17 C 1.46503 * 119.99636 * 5.52911 * 7 5 4 18 18 C 1.50703 * 109.47023 * 94.96166 * 17 7 5 19 19 C 1.34507 * 125.79447 * 89.99530 * 18 17 7 20 20 C 1.41382 * 106.84220 * 179.97438 * 19 18 17 21 21 C 1.34506 * 106.84075 * 0.02562 * 20 19 18 22 22 O 1.34304 * 108.42371 * 359.73961 * 21 20 19 23 23 C 1.41796 * 117.79140 * 0.02562 * 4 3 2 24 24 C 1.40130 * 121.32936 * 179.97438 * 23 4 3 25 25 C 1.36198 * 119.66914 * 179.97438 * 24 23 4 26 26 C 1.39587 * 120.80516 * 359.97438 * 25 24 23 27 27 F 1.35101 * 119.50478 * 179.97438 * 26 25 24 28 28 C 1.36289 * 120.99637 * 0.02769 * 26 25 24 29 29 C 1.40639 * 119.72843 * 359.97438 * 28 26 25 30 30 N 1.30982 * 119.05497 * 180.02562 * 2 1 3 31 31 H 1.08996 * 109.47028 * 269.97964 * 1 2 3 32 32 H 1.09006 * 109.47128 * 29.97448 * 1 2 3 33 33 H 1.08998 * 109.47193 * 149.97600 * 1 2 3 34 34 H 1.07992 * 120.21045 * 0.02562 * 3 2 1 35 35 H 1.09000 * 109.47496 * 210.00612 * 8 7 5 36 36 H 1.09001 * 109.46914 * 329.99950 * 8 7 5 37 37 H 0.97003 * 120.00212 * 179.97438 * 12 11 9 38 38 H 1.08998 * 109.47035 * 214.95587 * 17 7 5 39 39 H 1.08995 * 109.47138 * 334.95610 * 17 7 5 40 40 H 1.07999 * 126.57748 * 359.96867 * 19 18 17 41 41 H 1.08008 * 126.57823 * 179.97438 * 20 19 18 42 42 H 1.08006 * 125.78911 * 180.02562 * 21 20 19 43 43 H 1.07993 * 120.16548 * 0.02562 * 24 23 4 44 44 H 1.08002 * 119.59587 * 179.97438 * 25 24 23 45 45 H 1.08001 * 120.13339 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1836 1.2175 0.0000 4 6 3.5722 1.2301 -0.0005 5 6 4.3248 2.5034 0.0000 6 8 5.1533 2.7201 -0.8625 7 7 4.0919 3.4235 0.9570 8 6 4.7470 4.7321 0.8900 9 6 3.8800 5.6888 0.1129 10 1 2.9351 5.3555 -0.2904 11 6 4.2924 6.9899 -0.0823 12 7 5.4426 7.3959 0.4092 13 14 3.2172 8.1760 -1.0450 14 1 1.9030 8.3141 -0.3676 15 1 3.8813 9.5024 -1.1130 16 1 3.0128 7.6541 -2.4202 17 6 3.1835 3.1149 2.0642 18 6 3.9792 2.6148 3.2423 19 6 4.4943 3.3764 4.2240 20 6 5.1578 2.5022 5.1153 21 6 5.0090 1.2587 4.6246 22 8 4.2897 1.3323 3.4928 23 6 4.2447 -0.0182 -0.0016 24 6 5.6440 -0.0920 -0.0028 25 6 6.2550 -1.3093 -0.0033 26 6 5.5041 -2.4860 -0.0021 27 9 6.1373 -3.6794 -0.0032 28 6 4.1417 -2.4492 -0.0011 29 6 3.4775 -1.2095 -0.0005 30 7 2.1432 -1.1450 -0.0005 31 1 -0.3633 -0.0004 1.0276 32 1 -0.3634 0.8903 -0.5135 33 1 -0.3633 -0.8897 -0.5142 34 1 1.6317 2.1458 0.0004 35 1 4.8970 5.1155 1.8993 36 1 5.7118 4.6304 0.3930 37 1 5.7329 8.3112 0.2715 38 1 2.6392 4.0151 2.3493 39 1 2.4765 2.3468 1.7508 40 1 4.4161 4.4498 4.3141 41 1 5.6840 2.7797 6.0168 42 1 5.3978 0.3539 5.0681 43 1 6.2351 0.8118 -0.0024 44 1 7.3336 -1.3647 -0.0046 45 1 3.5745 -3.3683 0.0002 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069455496.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:25 Heat of formation + Delta-G solvation = -0.552570 kcal Electronic energy + Delta-G solvation = -33468.036490 eV Core-core repulsion = 28946.157458 eV Total energy + Delta-G solvation = -4521.879032 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 368.132 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -49.09700 -42.36524 -41.14999 -38.98698 -37.28799 -35.46118 -33.62565 -32.85040 -32.62235 -32.03961 -30.25673 -30.15953 -28.02537 -27.54076 -25.76182 -24.43180 -23.52099 -23.00449 -22.03801 -21.50180 -20.53356 -19.12040 -18.67979 -17.70963 -17.42216 -16.92323 -16.42406 -16.24243 -15.99334 -15.86601 -15.74298 -15.44317 -14.82868 -14.71015 -14.51586 -14.32899 -14.07178 -13.98305 -13.51750 -13.14685 -13.04401 -12.88083 -12.73340 -12.63807 -12.55003 -12.46815 -12.25690 -11.96798 -11.72400 -11.49210 -11.39709 -11.26698 -11.04473 -10.73651 -10.43454 -10.28895 -10.01871 -9.83947 -9.71468 -9.19568 -8.70171 -8.55430 -8.42319 -8.31909 -8.02619 -6.16664 -4.23080 0.07722 0.58483 1.65435 1.84781 2.59517 2.76275 2.97301 3.24079 3.27558 3.30037 3.33387 3.58186 3.76287 3.89757 4.24852 4.32222 4.46922 4.59166 4.61652 4.71602 4.87517 4.92006 5.01520 5.09254 5.17758 5.22244 5.22667 5.31396 5.41106 5.43807 5.59432 5.64014 5.74583 5.76641 5.83386 5.87648 5.97159 5.98545 6.13789 6.19009 6.25040 6.36276 6.65628 6.67603 6.81276 7.17599 7.29632 7.34803 7.76348 7.77525 8.01440 8.06099 8.56626 8.81561 9.42623 10.91421 Molecular weight = 368.13amu Principal moments of inertia in cm(-1) A = 0.008998 B = 0.003511 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3111.226083 B = 7973.391834 C = 8742.576901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.171 3.829 3 C -0.153 4.153 4 C -0.033 4.033 5 C 0.552 3.448 6 O -0.516 6.516 7 N -0.579 5.579 8 C 0.246 3.754 9 C -0.535 4.535 10 H 0.059 0.941 11 C 0.066 3.934 12 N -0.891 5.891 13 Si 0.899 3.101 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.276 1.276 17 C 0.178 3.822 18 C -0.029 4.029 19 C -0.189 4.189 20 C -0.213 4.213 21 C -0.047 4.047 22 O -0.174 6.174 23 C -0.087 4.087 24 C -0.043 4.043 25 C -0.157 4.157 26 C 0.125 3.875 27 F -0.136 7.136 28 C -0.141 4.141 29 C 0.162 3.838 30 N -0.474 5.474 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.150 0.850 35 H 0.039 0.961 36 H 0.048 0.952 37 H 0.266 0.734 38 H 0.119 0.881 39 H 0.091 0.909 40 H 0.151 0.849 41 H 0.145 0.855 42 H 0.197 0.803 43 H 0.147 0.853 44 H 0.141 0.859 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.744 -15.947 6.179 18.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.019 3.981 3 C -0.173 4.173 4 C -0.044 4.044 5 C 0.338 3.662 6 O -0.392 6.392 7 N -0.310 5.310 8 C 0.128 3.872 9 C -0.574 4.574 10 H 0.078 0.922 11 C -0.137 4.137 12 N -0.529 5.529 13 Si 0.726 3.274 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.201 1.201 17 C 0.054 3.946 18 C -0.081 4.081 19 C -0.209 4.209 20 C -0.233 4.233 21 C -0.116 4.116 22 O -0.070 6.070 23 C -0.090 4.090 24 C -0.062 4.062 25 C -0.176 4.176 26 C 0.104 3.896 27 F -0.115 7.115 28 C -0.161 4.161 29 C 0.040 3.960 30 N -0.184 5.184 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.167 0.833 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.137 0.863 39 H 0.109 0.891 40 H 0.169 0.831 41 H 0.163 0.837 42 H 0.214 0.786 43 H 0.164 0.836 44 H 0.159 0.841 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.602 -16.732 5.534 18.492 hybrid contribution 0.316 1.483 -0.192 1.529 sum -5.285 -15.249 5.342 17.000 Atomic orbital electron populations 1.20823 0.87998 1.04016 1.03617 1.21417 0.97249 0.87497 0.91957 1.22236 0.93366 1.00068 1.01676 1.20712 0.94270 0.93943 0.95480 1.17999 0.82904 0.82461 0.82873 1.90808 1.33221 1.78195 1.36945 1.48281 1.45298 1.16274 1.21136 1.19433 0.94075 0.75530 0.98173 1.21338 1.05576 0.95162 1.35314 0.92246 1.24912 0.95186 0.98091 0.95556 1.69915 1.20096 1.17962 1.44884 0.86550 0.80318 0.79914 0.80626 1.20096 1.21111 1.20106 1.20154 0.90142 1.01715 0.82573 1.23099 1.04332 0.81031 0.99603 1.21713 1.02482 1.01022 0.95721 1.21820 1.05831 0.92879 1.02727 1.23948 0.99790 0.99961 0.87857 1.84037 1.56234 1.28955 1.37764 1.18612 0.94694 0.92562 1.03112 1.21065 0.93078 0.98466 0.93568 1.20917 1.01213 0.90891 1.04554 1.17302 0.90251 0.80811 1.01218 1.91515 1.82395 1.43878 1.93712 1.20544 0.92273 0.97950 1.05320 1.18276 0.89088 0.91478 0.97141 1.67603 1.08163 1.28807 1.13874 0.89758 0.90053 0.90084 0.83265 0.94318 0.93423 0.92466 0.86330 0.89127 0.83109 0.83698 0.78636 0.83564 0.84076 0.83477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.14 36.01 0.37 -0.55 16 2 C 0.17 2.14 6.78 -82.56 -0.56 1.58 16 3 C -0.15 -2.12 7.21 -38.96 -0.28 -2.40 16 4 C -0.03 -0.55 4.95 -104.34 -0.52 -1.06 16 5 C 0.55 11.17 6.47 -12.30 -0.08 11.09 16 6 O -0.52 -12.34 15.43 5.33 0.08 -12.26 16 7 N -0.58 -11.51 2.44 -177.53 -0.43 -11.95 16 8 C 0.25 5.98 5.22 -5.20 -0.03 5.95 16 9 C -0.54 -14.03 9.39 -34.44 -0.32 -14.35 16 10 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 11 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 12 N -0.89 -25.14 13.29 55.43 0.74 -24.40 16 13 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 14 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 15 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 17 C 0.18 2.81 5.79 -5.19 -0.03 2.78 16 18 C -0.03 -0.46 6.90 -35.63 -0.25 -0.71 16 19 C -0.19 -2.91 10.81 -39.71 -0.43 -3.33 16 20 C -0.21 -2.84 10.91 -39.71 -0.43 -3.27 16 21 C -0.05 -0.61 12.09 29.41 0.36 -0.25 16 22 O -0.17 -2.69 10.65 5.69 0.06 -2.63 16 23 C -0.09 -1.39 5.77 -106.51 -0.61 -2.01 16 24 C -0.04 -0.66 9.26 -39.61 -0.37 -1.03 16 25 C -0.16 -2.02 9.94 -39.81 -0.40 -2.41 16 26 C 0.13 1.58 7.23 -39.78 -0.29 1.29 16 27 F -0.14 -1.66 17.24 2.25 0.04 -1.62 16 28 C -0.14 -1.83 9.94 -39.38 -0.39 -2.22 16 29 C 0.16 2.40 6.61 -84.88 -0.56 1.84 16 30 N -0.47 -6.69 10.19 -7.26 -0.07 -6.76 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.57 8.07 -51.93 -0.42 0.15 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.15 1.81 7.59 -52.49 -0.40 1.41 16 35 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 36 H 0.05 1.33 7.35 -51.93 -0.38 0.95 16 37 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.12 1.76 8.11 -51.93 -0.42 1.34 16 39 H 0.09 1.24 4.44 -51.93 -0.23 1.01 16 40 H 0.15 2.27 8.06 -52.49 -0.42 1.85 16 41 H 0.15 1.57 8.06 -52.48 -0.42 1.15 16 42 H 0.20 1.74 8.06 -52.48 -0.42 1.31 16 43 H 0.15 2.43 6.53 -52.49 -0.34 2.09 16 44 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 45 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 393.81 15.07 5.93 5.93 Total: -1.00 -32.18 393.81 -8.71 -40.89 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -5.12 Total: 4.53 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -4.92 Total: -7.39 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 0.23 Total: -43.11 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: 0.14 Total: -14.89 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.18 -8.71 -40.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069455496.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.339 kcal (2) G-P(sol) polarization free energy of solvation -32.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds