Wall clock time and date at job start Tue Mar 31 2020 06:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38258 * 119.99519 * 2 1 4 4 C 1.38215 * 119.99650 * 179.97438 * 3 2 1 5 5 C 1.38260 * 120.00186 * 0.02562 * 4 3 2 6 6 S 1.76199 * 120.00066 * 179.97438 * 5 4 3 7 7 O 1.42103 * 106.40243 * 258.70723 * 6 5 4 8 8 O 1.42101 * 106.40149 * 125.78593 * 6 5 4 9 9 N 1.65596 * 107.21818 * 12.24772 * 6 5 4 10 10 C 1.46502 * 120.00068 * 276.11551 * 9 6 5 11 11 C 1.50695 * 109.47512 * 265.00200 * 10 9 6 12 12 H 1.07999 * 120.00123 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00153 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00117 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00158 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47215 * 89.99766 * 15 13 11 17 17 H 1.48501 * 109.47285 * 210.00071 * 15 13 11 18 18 H 1.48503 * 109.46819 * 330.00208 * 15 13 11 19 19 C 1.46497 * 120.00356 * 96.11992 * 9 6 5 20 20 C 1.52999 * 109.47264 * 266.12524 * 19 9 6 21 21 C 1.53779 * 113.61565 * 270.78506 * 20 19 9 22 22 C 1.53955 * 87.02326 * 220.04582 * 21 20 19 23 23 C 1.53775 * 113.61998 * 173.17718 * 20 19 9 24 24 C 1.38208 * 119.99748 * 0.24816 * 5 4 3 25 25 N 1.48017 * 119.99847 * 179.73095 * 24 5 4 26 26 O 1.21805 * 120.00152 * 173.00808 * 25 24 5 27 27 O 1.21803 * 120.00158 * 353.00417 * 25 24 5 28 28 C 1.38209 * 120.00278 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.47760 * 90.00292 * 1 2 3 30 30 H 1.09008 * 109.46960 * 210.00603 * 1 2 3 31 31 H 1.09002 * 109.47429 * 330.00117 * 1 2 3 32 32 H 1.07996 * 120.00392 * 359.97438 * 3 2 1 33 33 H 1.07999 * 120.00183 * 179.97438 * 4 3 2 34 34 H 1.09002 * 109.46805 * 25.00403 * 10 9 6 35 35 H 1.08999 * 109.47112 * 144.99668 * 10 9 6 36 36 H 0.97002 * 120.00397 * 180.02562 * 14 13 11 37 37 H 1.09004 * 109.47027 * 26.12298 * 19 9 6 38 38 H 1.09000 * 109.47582 * 146.11902 * 19 9 6 39 39 H 1.09005 * 112.84788 * 41.97806 * 20 19 9 40 40 H 1.08998 * 113.61384 * 334.56454 * 21 20 19 41 41 H 1.09001 * 113.61479 * 105.46665 * 21 20 19 42 42 H 1.09005 * 113.53607 * 270.81494 * 22 21 20 43 43 H 1.08993 * 113.66788 * 139.92963 * 22 21 20 44 44 H 1.09000 * 113.61786 * 254.53286 * 23 20 19 45 45 H 1.09009 * 113.61054 * 25.34586 * 23 20 19 46 46 H 1.08005 * 119.99951 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 0.0005 5 6 4.2717 0.0001 0.0005 6 16 6.0337 0.0002 0.0005 7 8 6.4349 -0.2667 -1.3363 8 8 6.4349 -0.7969 1.1064 9 7 6.5238 1.5460 0.3361 10 6 6.6115 2.5364 -0.7398 11 6 8.0238 2.5862 -1.2630 12 1 8.7806 1.9445 -0.8366 13 6 8.3499 3.4509 -2.2862 14 7 7.4282 4.2319 -2.8060 15 14 10.1004 3.5120 -2.9353 16 1 10.2513 2.5367 -4.0450 17 1 10.3959 4.8791 -3.4343 18 1 11.0457 3.1687 -1.8427 19 6 6.8698 1.9231 1.7088 20 6 5.6434 2.5263 2.3965 21 6 5.5184 4.0475 2.2098 22 6 5.0689 4.1103 3.6809 23 6 5.8515 2.8039 3.8946 24 6 3.5807 -1.1968 -0.0052 25 7 4.3208 -2.4786 -0.0112 26 8 3.7186 -3.5302 0.1122 27 8 5.5320 -2.4819 -0.1396 28 6 2.1981 -1.1969 0.0005 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5140 31 1 -0.3634 0.8900 0.5138 32 1 1.6582 2.1327 -0.0004 33 1 4.1203 2.1327 0.0001 34 1 5.9345 2.2568 -1.5471 35 1 6.3319 3.5170 -0.3546 36 1 7.6575 4.8400 -3.5261 37 1 7.1959 1.0392 2.2571 38 1 7.6749 2.6576 1.6919 39 1 4.7246 1.9824 2.1767 40 1 6.4705 4.5441 2.0227 41 1 4.7420 4.3383 1.5023 42 1 3.9923 4.0008 3.8122 43 1 5.4788 4.9593 4.2279 44 1 5.3436 2.0921 4.5453 45 1 6.8950 2.9584 4.1692 46 1 1.6581 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069485721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:55 Heat of formation + Delta-G solvation = -24.057737 kcal Electronic energy + Delta-G solvation = -33320.664571 eV Core-core repulsion = 28920.837440 eV Total energy + Delta-G solvation = -4399.827131 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 368.128 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.33598 -39.81197 -38.87007 -36.80385 -36.51972 -35.39781 -35.11795 -33.69522 -32.54635 -32.12761 -28.60390 -27.90202 -26.81282 -26.21818 -25.45240 -23.34638 -22.99566 -22.37867 -21.72800 -19.73460 -19.19789 -18.81000 -18.21310 -17.66301 -17.45752 -16.84861 -16.41443 -15.91560 -15.73769 -15.16027 -14.95733 -14.87514 -14.57001 -14.43028 -14.31734 -13.57483 -13.06711 -12.98117 -12.84153 -12.81173 -12.55144 -12.29420 -12.28205 -12.09539 -11.88375 -11.58942 -11.51033 -11.40146 -11.26362 -11.17213 -11.08524 -11.00814 -10.92976 -10.73280 -10.67294 -10.50352 -10.27691 -10.06044 -9.90784 -9.84028 -9.71450 -9.62671 -8.48878 -8.19127 -6.12007 -4.15045 -0.46135 0.41496 0.76930 1.18250 1.20812 2.83251 3.31813 3.38284 3.39244 3.44217 3.98911 4.05386 4.26413 4.41450 4.42930 4.53853 4.74539 4.75158 4.78953 4.86298 4.92027 5.00258 5.07262 5.17908 5.18646 5.23122 5.27075 5.41608 5.48290 5.53697 5.60732 5.73422 5.76424 5.84348 5.92804 5.95733 6.00123 6.13374 6.28260 6.31125 6.38266 6.47162 6.64519 7.05116 7.24928 7.46132 7.50597 7.86472 8.12623 8.87596 9.50708 10.96798 Molecular weight = 368.13amu Principal moments of inertia in cm(-1) A = 0.008609 B = 0.004437 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3251.494633 B = 6308.794570 C = 7446.110833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.047 4.047 3 C -0.088 4.088 4 C -0.021 4.021 5 C -0.623 4.623 6 S 2.685 3.315 7 O -0.918 6.918 8 O -0.950 6.950 9 N -0.980 5.980 10 C 0.250 3.750 11 C -0.526 4.526 12 H 0.064 0.936 13 C 0.064 3.936 14 N -0.897 5.897 15 Si 0.896 3.104 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.272 1.272 19 C 0.127 3.873 20 C -0.137 4.137 21 C -0.129 4.129 22 C -0.144 4.144 23 C -0.133 4.133 24 C 0.044 3.956 25 N 0.015 4.985 26 O -0.133 6.133 27 O -0.146 6.146 28 C -0.073 4.073 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.151 0.849 33 H 0.165 0.835 34 H 0.034 0.966 35 H 0.045 0.955 36 H 0.264 0.736 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.085 0.915 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.323 -1.714 10.487 18.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.047 4.047 3 C -0.107 4.107 4 C -0.040 4.040 5 C -0.702 4.702 6 S 2.766 3.234 7 O -0.908 6.908 8 O -0.940 6.940 9 N -0.821 5.821 10 C 0.129 3.871 11 C -0.565 4.565 12 H 0.082 0.918 13 C -0.138 4.138 14 N -0.537 5.537 15 Si 0.724 3.276 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.197 1.197 19 C 0.001 3.999 20 C -0.157 4.157 21 C -0.166 4.166 22 C -0.182 4.182 23 C -0.171 4.171 24 C -0.039 4.039 25 N 0.535 4.465 26 O -0.355 6.355 27 O -0.358 6.358 28 C -0.092 4.092 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.169 0.831 33 H 0.182 0.818 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.101 0.899 38 H 0.113 0.887 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.103 0.897 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -15.232 -1.654 10.167 18.388 hybrid contribution 0.313 0.065 -0.521 0.611 sum -14.919 -1.589 9.646 17.837 Atomic orbital electron populations 1.20938 0.88800 1.04136 1.03714 1.20160 0.97358 0.91714 0.95511 1.21671 0.94286 0.98761 0.95938 1.21247 0.94776 0.96504 0.91518 1.31780 1.32862 0.96147 1.09364 1.02964 0.72778 0.72795 0.74859 1.93638 1.77827 1.83009 1.36278 1.93541 1.79363 1.66447 1.54611 1.57664 1.78697 1.30410 1.15373 1.19221 0.98176 0.87000 0.82726 1.21445 0.94992 1.21764 1.18312 0.91813 1.24898 0.97734 0.95184 0.96019 1.69899 1.33201 1.24262 1.26303 0.86520 0.84415 0.77187 0.79525 1.20333 1.21210 1.19664 1.21369 0.96443 1.01363 0.80702 1.23125 0.99363 0.97181 0.96012 1.22989 1.02358 0.95549 0.95725 1.22858 0.99680 0.97902 0.97737 1.22873 1.01004 0.97432 0.95786 1.20461 0.92560 0.82334 1.08554 1.43767 1.01456 1.02845 0.98400 1.94478 1.69891 1.19604 1.51481 1.94605 0.95484 1.92989 1.52762 1.20985 0.90646 1.00630 0.96984 0.89682 0.90400 0.90161 0.83132 0.81805 0.94833 0.93743 0.92675 0.89859 0.88680 0.90202 0.89191 0.91665 0.90835 0.91677 0.91833 0.89662 0.82355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.65 10.01 36.00 0.36 -0.29 16 2 C -0.05 -0.44 5.88 -104.63 -0.62 -1.06 16 3 C -0.09 -0.89 9.70 -39.58 -0.38 -1.27 16 4 C -0.02 -0.30 8.29 -39.58 -0.33 -0.62 16 5 C -0.62 -10.78 5.82 -39.58 -0.23 -11.01 16 6 S 2.69 57.04 3.90 -107.50 -0.42 56.62 16 7 O -0.92 -23.29 16.57 -64.89 -1.08 -24.37 16 8 O -0.95 -20.98 14.19 -67.04 -0.95 -21.93 16 9 N -0.98 -19.42 1.95 -115.67 -0.23 -19.65 16 10 C 0.25 5.77 4.14 -5.20 -0.02 5.75 16 11 C -0.53 -14.10 9.38 -34.44 -0.32 -14.42 16 12 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 13 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 14 N -0.90 -24.99 13.29 55.43 0.74 -24.25 16 15 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 C 0.13 2.10 5.49 -4.04 -0.02 2.08 16 20 C -0.14 -1.82 3.85 -89.81 -0.35 -2.16 16 21 C -0.13 -1.61 6.96 -25.83 -0.18 -1.79 16 22 C -0.14 -1.49 8.09 -25.83 -0.21 -1.70 16 23 C -0.13 -1.48 7.64 -25.92 -0.20 -1.68 16 24 C 0.04 0.73 6.82 -79.95 -0.55 0.19 16 25 N 0.01 0.28 4.45 33.96 0.15 0.43 16 26 O -0.13 -2.28 18.47 -29.46 -0.54 -2.82 16 27 O -0.15 -3.22 13.77 -39.48 -0.54 -3.76 16 28 C -0.07 -0.88 9.21 -39.58 -0.36 -1.24 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.34 8.09 -51.92 -0.42 -0.08 16 31 H 0.08 0.32 8.09 -51.93 -0.42 -0.10 16 32 H 0.15 0.99 8.06 -52.49 -0.42 0.56 16 33 H 0.16 2.19 6.14 -52.49 -0.32 1.87 16 34 H 0.03 0.83 7.78 -51.93 -0.40 0.42 16 35 H 0.04 0.99 7.41 -51.93 -0.38 0.61 16 36 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.08 1.36 6.90 -51.93 -0.36 1.00 16 38 H 0.09 1.57 7.77 -51.93 -0.40 1.16 16 39 H 0.08 1.02 6.57 -51.93 -0.34 0.68 16 40 H 0.09 1.21 7.87 -51.93 -0.41 0.81 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.08 0.91 8.10 -51.92 -0.42 0.49 16 46 H 0.16 1.49 7.63 -52.48 -0.40 1.09 16 LS Contribution 391.43 15.07 5.90 5.90 Total: -1.00 -34.19 391.43 -11.86 -46.05 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -6.36 Total: -0.99 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: -3.50 Total: -27.59 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: 0.66 Total: -43.46 kcal Atomic # 8 Polarization: -49.77 SS G_CDS: -3.11 Total: -52.89 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 57.04 SS G_CDS: -0.42 Total: 56.62 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.19 -11.86 -46.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069485721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.991 kcal (2) G-P(sol) polarization free energy of solvation -34.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds