Wall clock time and date at job start Tue Mar 31 2020 06:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38258 * 119.99519 * 2 1 4 4 C 1.38215 * 119.99650 * 179.97438 * 3 2 1 5 5 C 1.38260 * 120.00186 * 0.02562 * 4 3 2 6 6 S 1.76199 * 120.00066 * 179.97438 * 5 4 3 7 7 O 1.42103 * 106.40243 * 258.70723 * 6 5 4 8 8 O 1.42101 * 106.40149 * 125.78593 * 6 5 4 9 9 N 1.65596 * 107.21818 * 12.24772 * 6 5 4 10 10 C 1.46502 * 120.00068 * 276.11551 * 9 6 5 11 11 C 1.50695 * 109.47512 * 265.00200 * 10 9 6 12 12 H 1.07999 * 120.00123 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00153 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00117 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00158 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47215 * 89.99766 * 15 13 11 17 17 H 1.48501 * 109.47285 * 210.00071 * 15 13 11 18 18 H 1.48503 * 109.46819 * 330.00208 * 15 13 11 19 19 C 1.46497 * 120.00356 * 96.11992 * 9 6 5 20 20 C 1.52999 * 109.47264 * 266.12524 * 19 9 6 21 21 C 1.53779 * 113.61565 * 270.78506 * 20 19 9 22 22 C 1.53955 * 87.02326 * 220.04582 * 21 20 19 23 23 C 1.53775 * 113.61998 * 173.17718 * 20 19 9 24 24 C 1.38208 * 119.99748 * 0.24816 * 5 4 3 25 25 N 1.48017 * 119.99847 * 179.73095 * 24 5 4 26 26 O 1.21805 * 120.00152 * 173.00808 * 25 24 5 27 27 O 1.21803 * 120.00158 * 353.00417 * 25 24 5 28 28 C 1.38209 * 120.00278 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.47760 * 90.00292 * 1 2 3 30 30 H 1.09008 * 109.46960 * 210.00603 * 1 2 3 31 31 H 1.09002 * 109.47429 * 330.00117 * 1 2 3 32 32 H 1.07996 * 120.00392 * 359.97438 * 3 2 1 33 33 H 1.07999 * 120.00183 * 179.97438 * 4 3 2 34 34 H 1.09002 * 109.46805 * 25.00403 * 10 9 6 35 35 H 1.08999 * 109.47112 * 144.99668 * 10 9 6 36 36 H 0.97002 * 120.00397 * 180.02562 * 14 13 11 37 37 H 1.09004 * 109.47027 * 26.12298 * 19 9 6 38 38 H 1.09000 * 109.47582 * 146.11902 * 19 9 6 39 39 H 1.09005 * 112.84788 * 41.97806 * 20 19 9 40 40 H 1.08998 * 113.61384 * 334.56454 * 21 20 19 41 41 H 1.09001 * 113.61479 * 105.46665 * 21 20 19 42 42 H 1.09005 * 113.53607 * 270.81494 * 22 21 20 43 43 H 1.08993 * 113.66788 * 139.92963 * 22 21 20 44 44 H 1.09000 * 113.61786 * 254.53286 * 23 20 19 45 45 H 1.09009 * 113.61054 * 25.34586 * 23 20 19 46 46 H 1.08005 * 119.99951 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 0.0005 5 6 4.2717 0.0001 0.0005 6 16 6.0337 0.0002 0.0005 7 8 6.4349 -0.2667 -1.3363 8 8 6.4349 -0.7969 1.1064 9 7 6.5238 1.5460 0.3361 10 6 6.6115 2.5364 -0.7398 11 6 8.0238 2.5862 -1.2630 12 1 8.7806 1.9445 -0.8366 13 6 8.3499 3.4509 -2.2862 14 7 7.4282 4.2319 -2.8060 15 14 10.1004 3.5120 -2.9353 16 1 10.2513 2.5367 -4.0450 17 1 10.3959 4.8791 -3.4343 18 1 11.0457 3.1687 -1.8427 19 6 6.8698 1.9231 1.7088 20 6 5.6434 2.5263 2.3965 21 6 5.5184 4.0475 2.2098 22 6 5.0689 4.1103 3.6809 23 6 5.8515 2.8039 3.8946 24 6 3.5807 -1.1968 -0.0052 25 7 4.3208 -2.4786 -0.0112 26 8 3.7186 -3.5302 0.1122 27 8 5.5320 -2.4819 -0.1396 28 6 2.1981 -1.1969 0.0005 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5140 31 1 -0.3634 0.8900 0.5138 32 1 1.6582 2.1327 -0.0004 33 1 4.1203 2.1327 0.0001 34 1 5.9345 2.2568 -1.5471 35 1 6.3319 3.5170 -0.3546 36 1 7.6575 4.8400 -3.5261 37 1 7.1959 1.0392 2.2571 38 1 7.6749 2.6576 1.6919 39 1 4.7246 1.9824 2.1767 40 1 6.4705 4.5441 2.0227 41 1 4.7420 4.3383 1.5023 42 1 3.9923 4.0008 3.8122 43 1 5.4788 4.9593 4.2279 44 1 5.3436 2.0921 4.5453 45 1 6.8950 2.9584 4.1692 46 1 1.6581 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069485721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:54 Heat of formation + Delta-G solvation = -44.538926 kcal Electronic energy + Delta-G solvation = -33321.552702 eV Core-core repulsion = 28920.837440 eV Total energy + Delta-G solvation = -4400.715262 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 368.128 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.70718 -40.82974 -39.94166 -38.34601 -38.13456 -36.99400 -36.81672 -34.60615 -34.51772 -33.21854 -30.19877 -28.62947 -28.08430 -27.85728 -26.40735 -24.80095 -24.34320 -23.49911 -23.04863 -21.02209 -20.22542 -20.21550 -19.62334 -19.06613 -18.91504 -18.43763 -18.23329 -17.43845 -16.82781 -16.45040 -16.35848 -16.02074 -15.88746 -15.51944 -15.26906 -15.01662 -14.48411 -14.37018 -13.83748 -13.78785 -13.61274 -13.42676 -13.34874 -13.24426 -13.21561 -13.12035 -13.06257 -12.99656 -12.81216 -12.80338 -12.60479 -12.51824 -12.47444 -12.25588 -12.10469 -12.04912 -11.80665 -11.43788 -11.21212 -10.99335 -10.84277 -10.59945 -10.55155 -9.82744 -8.22122 -6.31186 -1.69856 -0.81523 -0.58751 -0.03318 -0.02050 1.37142 1.41245 1.49272 1.84230 1.92728 2.40252 2.60424 3.02186 3.10041 3.28507 3.48198 3.58502 3.63691 3.70347 3.74999 3.83871 3.87228 4.04856 4.11358 4.16520 4.26297 4.47977 4.53610 4.57434 4.71286 4.76115 4.79471 4.83850 4.93710 4.99264 5.04996 5.05579 5.08414 5.13896 5.18822 5.23167 5.36479 5.36966 5.45488 5.64797 5.68861 5.87774 6.07993 6.10019 6.74709 7.36777 8.85452 Molecular weight = 368.13amu Principal moments of inertia in cm(-1) A = 0.008609 B = 0.004437 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3251.494633 B = 6308.794570 C = 7446.110833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.023 4.023 3 C -0.071 4.071 4 C -0.027 4.027 5 C -0.648 4.648 6 S 2.691 3.309 7 O -0.982 6.982 8 O -0.975 6.975 9 N -0.981 5.981 10 C 0.269 3.731 11 C -0.549 4.549 12 H 0.047 0.953 13 C 0.021 3.979 14 N -0.918 5.918 15 Si 0.946 3.054 16 H -0.284 1.284 17 H -0.270 1.270 18 H -0.268 1.268 19 C 0.121 3.879 20 C -0.139 4.139 21 C -0.134 4.134 22 C -0.127 4.127 23 C -0.131 4.131 24 C 0.013 3.987 25 N 0.011 4.989 26 O -0.067 6.067 27 O -0.256 6.256 28 C -0.061 4.061 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.199 0.801 33 H 0.162 0.838 34 H 0.014 0.986 35 H 0.054 0.946 36 H 0.268 0.732 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.092 0.908 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.086 0.914 46 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.024 -0.425 11.825 23.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.024 4.024 3 C -0.089 4.089 4 C -0.046 4.046 5 C -0.735 4.735 6 S 2.780 3.220 7 O -0.972 6.972 8 O -0.965 6.965 9 N -0.822 5.822 10 C 0.146 3.854 11 C -0.588 4.588 12 H 0.065 0.935 13 C -0.179 4.179 14 N -0.558 5.558 15 Si 0.772 3.228 16 H -0.210 1.210 17 H -0.194 1.194 18 H -0.192 1.192 19 C -0.004 4.004 20 C -0.159 4.159 21 C -0.172 4.172 22 C -0.164 4.164 23 C -0.169 4.169 24 C -0.071 4.071 25 N 0.528 4.472 26 O -0.311 6.311 27 O -0.441 6.441 28 C -0.081 4.081 29 H 0.120 0.880 30 H 0.113 0.887 31 H 0.124 0.876 32 H 0.216 0.784 33 H 0.179 0.821 34 H 0.032 0.968 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.110 0.890 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.104 0.896 46 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -19.631 -0.251 11.502 22.754 hybrid contribution 1.362 -0.447 -0.897 1.691 sum -18.270 -0.698 10.605 21.136 Atomic orbital electron populations 1.21151 0.84686 1.06356 1.05286 1.20799 0.99767 0.90136 0.91693 1.22242 0.92388 1.01297 0.92960 1.21448 0.96835 0.94914 0.91449 1.30909 1.29712 0.98346 1.14488 1.01985 0.74299 0.72484 0.73248 1.93541 1.80560 1.84033 1.39083 1.93479 1.81163 1.67134 1.54741 1.57426 1.79759 1.29035 1.15948 1.18822 0.95716 0.87804 0.83023 1.21784 0.96584 1.21538 1.18895 0.93478 1.25568 1.01130 0.95015 0.96223 1.69952 1.34515 1.24647 1.26677 0.85737 0.80689 0.77677 0.78741 1.20989 1.19436 1.19224 1.21585 0.98403 1.01118 0.79305 1.23143 0.97770 0.97586 0.97443 1.22987 1.01878 0.94451 0.97846 1.22800 1.00631 0.97503 0.95473 1.22910 1.01629 0.98356 0.93976 1.20761 0.93981 0.80521 1.11800 1.44179 1.01299 1.03922 0.97759 1.94375 1.69237 1.20590 1.46882 1.94644 0.97040 1.93507 1.58922 1.21575 0.88353 1.03328 0.94826 0.88019 0.88660 0.87647 0.78354 0.82064 0.96813 0.92789 0.92300 0.90485 0.89352 0.89486 0.90809 0.91302 0.88952 0.90513 0.90728 0.89566 0.79223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.44 10.01 71.23 0.71 0.28 16 2 C -0.02 -0.31 5.88 -19.87 -0.12 -0.43 16 3 C -0.07 -1.11 9.70 22.27 0.22 -0.89 16 4 C -0.03 -0.72 8.29 22.27 0.18 -0.53 16 5 C -0.65 -23.10 5.82 22.27 0.13 -22.97 16 6 S 2.69 124.65 3.90 -56.49 -0.22 124.43 16 7 O -0.98 -55.23 16.57 -120.62 -2.00 -57.23 16 8 O -0.98 -47.46 14.19 -118.56 -1.68 -49.14 16 9 N -0.98 -41.74 1.95 -519.85 -1.01 -42.75 16 10 C 0.27 13.13 4.14 85.63 0.35 13.49 16 11 C -0.55 -31.06 9.38 25.60 0.24 -30.82 16 12 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 13 C 0.02 1.16 5.46 84.65 0.46 1.62 16 14 N -0.92 -52.13 13.29 21.45 0.28 -51.84 16 15 Si 0.95 44.92 29.54 68.60 2.03 46.95 16 16 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 17 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 18 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 19 C 0.12 4.26 5.49 86.38 0.47 4.73 16 20 C -0.14 -3.69 3.85 -10.27 -0.04 -3.73 16 21 C -0.13 -3.23 6.96 31.18 0.22 -3.01 16 22 C -0.13 -2.28 8.09 31.18 0.25 -2.03 16 23 C -0.13 -2.74 7.64 31.12 0.24 -2.50 16 24 C 0.01 0.42 6.82 36.37 0.25 0.67 16 25 N 0.01 0.45 4.45 -46.47 -0.21 0.24 16 26 O -0.07 -2.23 18.47 18.88 0.35 -1.88 16 27 O -0.26 -12.33 13.77 28.46 0.39 -11.94 16 28 C -0.06 -1.25 9.21 22.27 0.21 -1.04 16 29 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.09 0.14 8.09 -2.38 -0.02 0.12 16 31 H 0.10 0.00 8.09 -2.39 -0.02 -0.02 16 32 H 0.20 1.24 8.06 -2.91 -0.02 1.22 16 33 H 0.16 4.27 6.14 -2.91 -0.02 4.25 16 34 H 0.01 0.73 7.78 -2.39 -0.02 0.71 16 35 H 0.05 2.51 7.41 -2.39 -0.02 2.49 16 36 H 0.27 14.34 8.31 -92.71 -0.77 13.56 16 37 H 0.08 2.75 6.90 -2.38 -0.02 2.74 16 38 H 0.09 3.15 7.77 -2.39 -0.02 3.13 16 39 H 0.09 2.18 6.57 -2.38 -0.02 2.16 16 40 H 0.07 2.01 7.87 -2.39 -0.02 1.99 16 41 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 43 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.09 1.78 8.10 -2.38 -0.02 1.76 16 46 H 0.19 2.60 7.63 -2.91 -0.02 2.58 16 Total: -1.00 -83.89 391.43 2.71 -81.18 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 1.00 Total: 9.14 kcal Atomic # 6 Polarization: -50.94 SS G_CDS: 3.78 Total: -47.16 kcal Atomic # 7 Polarization: -93.41 SS G_CDS: -0.94 Total: -94.35 kcal Atomic # 8 Polarization: -117.25 SS G_CDS: -2.94 Total: -120.19 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Atomic # 16 Polarization: 124.65 SS G_CDS: -0.22 Total: 124.43 kcal Total: -83.89 2.71 -81.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069485721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.638 kcal (2) G-P(sol) polarization free energy of solvation -83.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds