Wall clock time and date at job start Tue Mar 31 2020 06:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38260 * 119.97048 * 2 1 4 4 C 1.38268 * 120.10972 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.97120 * 180.02562 * 4 3 2 6 6 C 1.38139 * 120.05510 * 0.02562 * 4 3 2 7 7 C 1.38733 * 119.94507 * 359.97438 * 6 4 3 8 8 O 1.35905 * 120.05258 * 179.97438 * 7 6 4 9 9 C 1.42901 * 116.99604 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.47046 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.47225 * 180.02562 * 10 9 8 12 12 O 1.21279 * 119.99463 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00193 * 180.02562 * 11 10 9 14 14 C 1.46509 * 119.99733 * 359.97438 * 13 11 10 15 15 C 1.50696 * 109.47141 * 89.99980 * 14 13 11 16 16 H 1.07999 * 120.00060 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99932 * 179.97438 * 15 14 13 18 18 N 1.31519 * 120.00050 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00020 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.46925 * 89.99818 * 19 17 15 21 21 H 1.48499 * 109.47326 * 209.99970 * 19 17 15 22 22 H 1.48506 * 109.47153 * 330.00091 * 19 17 15 23 23 C 1.46498 * 120.00182 * 179.97438 * 13 11 10 24 24 C 1.50696 * 109.47241 * 89.99806 * 23 13 11 25 25 C 1.38676 * 120.41982 * 269.72262 * 24 23 13 26 26 C 1.38631 * 118.42250 * 179.78085 * 25 24 23 27 27 C 1.38227 * 119.15727 * 0.51475 * 26 25 24 28 28 N 1.31857 * 120.76772 * 359.72289 * 27 26 25 29 29 C 1.31886 * 121.72244 * 0.02562 * 28 27 26 30 30 C 1.38145 * 119.97211 * 180.25567 * 2 1 3 31 31 H 1.09004 * 109.46912 * 89.99730 * 1 2 3 32 32 H 1.08995 * 109.47215 * 209.99809 * 1 2 3 33 33 H 1.08998 * 109.47080 * 329.99693 * 1 2 3 34 34 H 1.08001 * 119.94846 * 359.97438 * 3 2 1 35 35 H 1.09005 * 109.47293 * 269.98230 * 5 4 3 36 36 H 1.09005 * 109.47323 * 29.98113 * 5 4 3 37 37 H 1.08998 * 109.47310 * 149.98115 * 5 4 3 38 38 H 1.08001 * 120.02451 * 179.97438 * 6 4 3 39 39 H 1.08999 * 109.47144 * 300.00205 * 9 8 7 40 40 H 1.08998 * 109.47043 * 59.99803 * 9 8 7 41 41 H 1.08999 * 109.47084 * 299.99957 * 10 9 8 42 42 H 1.08996 * 109.47090 * 59.99784 * 10 9 8 43 43 H 1.09003 * 109.46841 * 210.00074 * 14 13 11 44 44 H 1.08998 * 109.46739 * 329.99815 * 14 13 11 45 45 H 0.96996 * 120.00046 * 180.02562 * 18 17 15 46 46 H 1.09002 * 109.47127 * 209.99957 * 23 13 11 47 47 H 1.09004 * 109.47037 * 329.99603 * 23 13 11 48 48 H 1.08001 * 120.78810 * 0.02562 * 25 24 23 49 49 H 1.07999 * 120.41799 * 180.22011 * 26 25 24 50 50 H 1.07997 * 119.61524 * 179.75205 * 27 26 25 51 51 H 1.07997 * 119.61610 * 180.02562 * 29 28 27 52 52 H 1.08001 * 120.02867 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1977 0.0000 4 6 3.5804 1.2011 0.0005 5 6 4.3301 2.5084 0.0011 6 6 4.2751 0.0071 0.0005 7 6 3.5844 -1.1960 0.0005 8 8 4.2657 -2.3720 0.0000 9 6 3.4891 -3.5716 -0.0005 10 6 4.4229 -4.7835 -0.0004 11 6 3.6040 -6.0487 -0.0016 12 8 2.3928 -5.9869 -0.0020 13 7 4.2176 -7.2486 -0.0012 14 6 5.6808 -7.3231 -0.0002 15 6 6.1815 -7.3487 1.4209 16 1 5.4800 -7.3134 2.2413 17 6 7.5350 -7.4182 1.6738 18 7 7.9720 -7.4410 2.9141 19 14 8.7483 -7.4798 0.2548 20 1 9.1414 -6.0979 -0.1207 21 1 9.9539 -8.2427 0.6671 22 1 8.1142 -8.1479 -0.9100 23 6 3.4215 -8.4784 -0.0018 24 6 3.1495 -8.9001 -1.4228 25 6 2.0159 -8.4513 -2.0836 26 6 1.8089 -8.8613 -3.3916 27 6 2.7272 -9.7065 -3.9858 28 7 3.7918 -10.1174 -3.3252 29 6 4.0233 -9.7437 -2.0817 30 6 2.1972 -1.1967 -0.0053 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8899 0.5138 33 1 -0.3633 0.8899 0.5139 34 1 1.6564 2.1323 -0.0004 35 1 4.5115 2.8237 -1.0264 36 1 3.7384 3.2664 0.5146 37 1 5.2825 2.3809 0.5156 38 1 5.3551 0.0103 0.0005 39 1 2.8603 -3.5977 0.8894 40 1 2.8604 -3.5969 -0.8905 41 1 5.0520 -4.7576 -0.8902 42 1 5.0514 -4.7579 0.8898 43 1 5.9987 -8.2304 -0.5139 44 1 6.0892 -6.4527 -0.5137 45 1 8.9243 -7.4895 3.0920 46 1 3.9709 -9.2671 0.5124 47 1 2.4766 -8.2998 0.5114 48 1 1.3131 -7.7947 -1.5922 49 1 0.9387 -8.5284 -3.9378 50 1 2.5711 -10.0337 -5.0031 51 1 4.9065 -10.1005 -1.5729 52 1 1.6572 -2.1320 -0.0099 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069514337.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:37 Heat of formation + Delta-G solvation = -40.535427 kcal Electronic energy + Delta-G solvation = -32459.878586 eV Core-core repulsion = 28195.559167 eV Total energy + Delta-G solvation = -4264.319419 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 368.189 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.54720 -41.19920 -40.49143 -38.84102 -37.03955 -34.87303 -34.48127 -33.91842 -33.18640 -32.52616 -31.32594 -29.97968 -28.16635 -28.05216 -27.46786 -25.21784 -24.66528 -24.14280 -23.00609 -22.68120 -21.45714 -20.01387 -19.15821 -18.81336 -18.05904 -17.79869 -17.46181 -17.35762 -17.05174 -16.86144 -16.81147 -16.54259 -16.03437 -15.58946 -14.98926 -14.86101 -14.77457 -14.65909 -14.49412 -14.39967 -14.15537 -14.03867 -13.97456 -13.96230 -13.78232 -13.60601 -13.34900 -13.29204 -12.94163 -12.75530 -12.67903 -12.57402 -12.40288 -12.37507 -12.30220 -12.05683 -11.76747 -11.69870 -11.56613 -11.04766 -10.81741 -10.69410 -10.47887 -9.99683 -9.60300 -9.55395 -9.14770 -8.31280 -6.38793 0.09550 0.31666 0.32302 0.45643 1.39023 1.41244 1.48970 1.57266 1.82610 2.32686 2.45208 2.72911 2.93807 3.03135 3.52069 3.59562 3.70795 3.82159 3.83568 3.87976 3.89327 3.97143 4.07801 4.08415 4.09254 4.25888 4.33728 4.39594 4.46561 4.48553 4.56683 4.63845 4.66457 4.69058 4.72071 4.75251 4.79518 4.82700 4.85248 4.87380 4.88091 4.98750 5.11657 5.18728 5.29933 5.34710 5.36717 5.41532 5.54791 5.55579 5.65231 5.75933 5.88032 6.13521 6.40014 6.48760 6.67676 6.99343 7.11653 7.28307 8.84668 Molecular weight = 368.19amu Principal moments of inertia in cm(-1) A = 0.007235 B = 0.002702 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3868.960038 B =10360.160688 C =13155.758432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.050 4.050 3 C -0.165 4.165 4 C -0.048 4.048 5 C -0.112 4.112 6 C -0.181 4.181 7 C 0.117 3.883 8 O -0.331 6.331 9 C 0.092 3.908 10 C -0.135 4.135 11 C 0.526 3.474 12 O -0.578 6.578 13 N -0.586 5.586 14 C 0.217 3.783 15 C -0.540 4.540 16 H 0.036 0.964 17 C 0.024 3.976 18 N -0.939 5.939 19 Si 0.932 3.068 20 H -0.265 1.265 21 H -0.285 1.285 22 H -0.239 1.239 23 C 0.161 3.839 24 C -0.157 4.157 25 C -0.064 4.064 26 C -0.169 4.169 27 C 0.091 3.909 28 N -0.509 5.509 29 C 0.100 3.900 30 C -0.231 4.231 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.149 0.851 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.130 0.870 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.110 0.890 42 H 0.099 0.901 43 H 0.047 0.953 44 H 0.044 0.956 45 H 0.268 0.732 46 H 0.092 0.908 47 H 0.085 0.915 48 H 0.135 0.865 49 H 0.165 0.835 50 H 0.185 0.815 51 H 0.155 0.845 52 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.021 12.146 -12.332 21.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.051 4.051 3 C -0.182 4.182 4 C -0.048 4.048 5 C -0.168 4.168 6 C -0.199 4.199 7 C 0.072 3.928 8 O -0.245 6.245 9 C 0.017 3.983 10 C -0.174 4.174 11 C 0.315 3.685 12 O -0.460 6.460 13 N -0.315 5.315 14 C 0.095 3.905 15 C -0.578 4.578 16 H 0.054 0.946 17 C -0.175 4.175 18 N -0.578 5.578 19 Si 0.755 3.245 20 H -0.190 1.190 21 H -0.211 1.211 22 H -0.162 1.162 23 C 0.038 3.962 24 C -0.160 4.160 25 C -0.090 4.090 26 C -0.188 4.188 27 C -0.066 4.066 28 N -0.218 5.218 29 C -0.057 4.057 30 C -0.250 4.250 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.167 0.833 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.148 0.852 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.128 0.872 42 H 0.118 0.882 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.077 0.923 46 H 0.110 0.890 47 H 0.103 0.897 48 H 0.153 0.847 49 H 0.183 0.817 50 H 0.202 0.798 51 H 0.172 0.828 52 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.666 11.537 -12.621 21.279 hybrid contribution 0.384 -0.064 0.757 0.851 sum -12.282 11.474 -11.864 20.573 Atomic orbital electron populations 1.20870 0.89035 1.03735 1.03390 1.20067 0.97530 0.92049 0.95410 1.21145 0.93422 0.98255 1.05424 1.20054 0.94192 0.95050 0.95509 1.20863 1.00054 0.92363 1.03519 1.20516 1.00599 0.89696 1.09115 1.19293 0.91265 0.85769 0.96476 1.85983 1.36820 1.12950 1.88748 1.22270 0.92716 0.81045 1.02285 1.21410 0.99110 0.90465 1.06429 1.20283 0.87654 0.85361 0.75153 1.90578 1.14660 1.87757 1.53037 1.47897 1.08016 1.04893 1.70669 1.19680 0.76222 0.98713 0.95898 1.21465 0.92424 1.51817 0.92089 0.94595 1.25697 1.00155 0.93711 0.97951 1.70035 1.15451 1.51081 1.21277 0.85938 0.78792 0.79452 0.80286 1.18994 1.21071 1.16182 1.20201 0.96925 0.86761 0.92265 1.21233 0.96831 0.99657 0.98255 1.21775 0.96003 0.96204 0.95036 1.22466 1.02051 0.99089 0.95235 1.23335 0.89035 0.93442 1.00807 1.67736 1.21308 1.24102 1.08675 1.22791 0.98199 0.93965 0.90696 1.21310 0.92738 0.99964 1.10970 0.89856 0.91589 0.89538 0.83309 0.89737 0.89609 0.91103 0.85245 0.92018 0.90904 0.87173 0.88247 0.93487 0.93822 0.92255 0.88957 0.89689 0.84666 0.81743 0.79786 0.82781 0.85592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.75 10.01 71.24 0.71 -1.04 16 2 C -0.05 -1.10 5.88 -19.88 -0.12 -1.22 16 3 C -0.16 -3.20 9.35 22.28 0.21 -2.99 16 4 C -0.05 -1.01 5.88 -19.88 -0.12 -1.12 16 5 C -0.11 -1.54 10.01 71.24 0.71 -0.82 16 6 C -0.18 -4.78 9.64 22.36 0.22 -4.57 16 7 C 0.12 3.53 6.69 22.50 0.15 3.68 16 8 O -0.33 -11.08 10.14 -92.48 -0.94 -12.02 16 9 C 0.09 2.98 4.03 71.98 0.29 3.27 16 10 C -0.13 -4.72 4.62 29.85 0.14 -4.58 16 11 C 0.53 19.88 7.67 87.66 0.67 20.55 16 12 O -0.58 -22.57 15.22 -3.03 -0.05 -22.61 16 13 N -0.59 -22.28 2.44 -830.49 -2.03 -24.31 16 14 C 0.22 8.98 4.03 85.63 0.35 9.33 16 15 C -0.54 -27.85 9.83 25.60 0.25 -27.60 16 16 H 0.04 2.13 8.06 -2.91 -0.02 2.10 16 17 C 0.02 1.30 5.47 84.65 0.46 1.76 16 18 N -0.94 -55.14 13.96 21.45 0.30 -54.85 16 19 Si 0.93 39.80 27.47 68.60 1.88 41.68 16 20 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 21 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.24 -9.18 6.54 99.48 0.65 -8.53 16 23 C 0.16 5.42 5.56 85.63 0.48 5.90 16 24 C -0.16 -4.70 5.48 -19.77 -0.11 -4.81 16 25 C -0.06 -1.70 9.86 22.47 0.22 -1.48 16 26 C -0.17 -3.60 10.11 22.36 0.23 -3.37 16 27 C 0.09 2.03 11.18 84.69 0.95 2.98 16 28 N -0.51 -14.60 10.36 -195.84 -2.03 -16.63 16 29 C 0.10 2.99 10.86 84.67 0.92 3.91 16 30 C -0.23 -6.24 8.69 22.36 0.19 -6.05 16 31 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.07 1.04 8.09 -2.39 -0.02 1.02 16 33 H 0.09 1.00 8.08 -2.39 -0.02 0.98 16 34 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 35 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.09 0.88 8.09 -2.38 -0.02 0.86 16 37 H 0.07 0.96 8.08 -2.39 -0.02 0.94 16 38 H 0.13 3.26 8.06 -2.91 -0.02 3.24 16 39 H 0.06 2.05 7.63 -2.39 -0.02 2.03 16 40 H 0.07 2.21 7.61 -2.39 -0.02 2.19 16 41 H 0.11 3.55 7.40 -2.39 -0.02 3.53 16 42 H 0.10 3.92 8.00 -2.39 -0.02 3.90 16 43 H 0.05 1.87 7.13 -2.39 -0.02 1.86 16 44 H 0.04 1.73 5.87 -2.39 -0.01 1.72 16 45 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 46 H 0.09 3.08 8.02 -2.39 -0.02 3.07 16 47 H 0.08 2.86 7.37 -2.39 -0.02 2.84 16 48 H 0.14 3.68 7.71 -2.91 -0.02 3.66 16 49 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 50 H 0.19 2.75 8.06 -2.91 -0.02 2.72 16 51 H 0.15 4.49 8.06 -2.91 -0.02 4.46 16 52 H 0.13 3.37 6.30 -2.91 -0.02 3.35 16 Total: -1.00 -67.37 433.53 4.80 -62.57 By element: Atomic # 1 Polarization: 33.59 SS G_CDS: 0.86 Total: 34.44 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: 6.80 Total: -8.28 kcal Atomic # 7 Polarization: -92.03 SS G_CDS: -3.76 Total: -95.78 kcal Atomic # 8 Polarization: -33.65 SS G_CDS: -0.98 Total: -34.63 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 1.88 Total: 41.68 kcal Total: -67.37 4.80 -62.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069514337.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.030 kcal (2) G-P(sol) polarization free energy of solvation -67.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds