Wall clock time and date at job start Tue Mar 31 2020 06:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42899 * 109.47104 * 2 1 4 4 C 1.35906 * 117.00279 * 180.02562 * 3 2 1 5 5 C 1.38725 * 120.06091 * 180.02562 * 4 3 2 6 6 C 1.38137 * 119.94965 * 180.02562 * 5 4 3 7 7 C 1.38276 * 120.05183 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.94073 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.46969 * 90.00218 * 8 7 6 10 10 C 1.50706 * 109.47348 * 179.97438 * 9 8 7 11 11 O 1.21283 * 119.99503 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00081 * 179.72561 * 10 9 8 13 13 C 1.46492 * 120.00231 * 359.97438 * 12 10 9 14 14 C 1.50700 * 109.47397 * 90.00207 * 13 12 10 15 15 H 1.07996 * 119.99558 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00300 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99779 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00037 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46996 * 89.99781 * 18 16 14 20 20 H 1.48494 * 109.46975 * 209.99459 * 18 16 14 21 21 H 1.48498 * 109.47167 * 329.99732 * 18 16 14 22 22 C 1.46506 * 119.99968 * 180.02562 * 12 10 9 23 23 C 1.50699 * 109.47352 * 89.99400 * 22 12 10 24 24 C 1.38671 * 120.42160 * 269.72525 * 23 22 12 25 25 C 1.38623 * 118.42169 * 179.78177 * 24 23 22 26 26 C 1.38230 * 119.16004 * 0.51526 * 25 24 23 27 27 N 1.31845 * 120.76331 * 359.72034 * 26 25 24 28 28 C 1.31895 * 121.72869 * 0.02562 * 27 26 25 29 29 C 1.38259 * 120.11166 * 0.24870 * 7 6 5 30 30 C 1.38147 * 120.05613 * 359.45584 * 29 7 6 31 31 H 1.08999 * 109.46627 * 299.99923 * 1 2 3 32 32 H 1.08999 * 109.47084 * 59.99689 * 1 2 3 33 33 H 1.08998 * 109.47153 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47128 * 240.00147 * 2 1 3 35 35 H 1.08994 * 109.47105 * 119.99835 * 2 1 3 36 36 H 1.08002 * 120.02319 * 359.97438 * 5 4 3 37 37 H 1.07996 * 119.98152 * 179.97438 * 6 5 4 38 38 H 1.09000 * 109.47664 * 330.00147 * 8 7 6 39 39 H 1.09002 * 109.46824 * 209.99618 * 8 7 6 40 40 H 1.09001 * 109.47671 * 59.99812 * 9 8 7 41 41 H 1.08998 * 109.47454 * 299.99809 * 9 8 7 42 42 H 1.08999 * 109.47479 * 210.00762 * 13 12 10 43 43 H 1.09006 * 109.47080 * 330.00171 * 13 12 10 44 44 H 0.97001 * 119.99696 * 180.02562 * 17 16 14 45 45 H 1.08995 * 109.47161 * 210.00105 * 22 12 10 46 46 H 1.09002 * 109.46900 * 329.99415 * 22 12 10 47 47 H 1.08001 * 120.78633 * 0.02562 * 24 23 22 48 48 H 1.08001 * 120.42009 * 180.21800 * 25 24 23 49 49 H 1.08001 * 119.61513 * 179.75248 * 26 25 24 50 50 H 1.08000 * 119.61905 * 179.97438 * 28 27 26 51 51 H 1.07999 * 119.97560 * 179.70508 * 29 7 6 52 52 H 1.08002 * 120.02913 * 180.25132 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5254 -0.0005 5 6 3.8852 2.8068 0.0000 6 6 5.2550 2.9852 -0.0011 7 6 6.0963 1.8878 -0.0033 8 6 7.5902 2.0853 -0.0050 9 6 8.0977 2.1507 1.4369 10 6 9.5918 2.3476 1.4352 11 8 10.1917 2.4273 0.3841 12 7 10.2606 2.4402 2.6016 13 6 9.5352 2.3501 3.8711 14 6 9.4715 0.9105 4.3122 15 1 9.9257 0.1398 3.7072 16 6 8.8326 0.5772 5.4877 17 7 8.2792 1.5157 6.2242 18 14 8.7532 -1.2073 6.0341 19 1 9.9346 -1.5197 6.8779 20 1 7.5120 -1.4300 6.8183 21 1 8.7498 -2.0908 4.8405 22 6 11.7130 2.6322 2.6000 23 6 12.0249 4.1066 2.5942 24 6 12.1751 4.7878 1.3957 25 6 12.4570 6.1444 1.4387 26 6 12.5889 6.7663 2.6661 27 7 12.4443 6.0857 3.7860 28 6 12.1708 4.7954 3.7831 29 6 5.5690 0.6097 -0.0095 30 6 4.1999 0.4259 -0.0022 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 3.2285 3.6642 0.0004 37 1 5.6694 3.9825 -0.0012 38 1 7.8332 3.0157 -0.5183 39 1 8.0664 1.2510 -0.5202 40 1 7.8548 1.2203 1.9502 41 1 7.6215 2.9849 1.9522 42 1 10.0527 2.9395 4.6280 43 1 8.5238 2.7349 3.7398 44 1 7.8300 1.2813 7.0514 45 1 12.1411 2.1737 3.4913 46 1 12.1400 2.1670 1.7114 47 1 12.0709 4.2745 0.4512 48 1 12.5770 6.7072 0.5248 49 1 12.8125 7.8221 2.7082 50 1 12.0598 4.2712 4.7208 51 1 6.2281 -0.2459 -0.0159 52 1 3.7885 -0.5727 -0.0030 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069530946.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:03 Heat of formation + Delta-G solvation = -29.628485 kcal Electronic energy + Delta-G solvation = -32391.600950 eV Core-core repulsion = 28127.754491 eV Total energy + Delta-G solvation = -4263.846459 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 368.189 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.19949 -40.03157 -39.00138 -37.75881 -35.29216 -33.56951 -32.95014 -32.13536 -31.78386 -31.27361 -30.85395 -28.75337 -27.52423 -26.08157 -24.31443 -23.75334 -23.39014 -22.77369 -22.07626 -21.66432 -20.60445 -18.32903 -18.29120 -16.96473 -16.72753 -16.41057 -16.23164 -16.03243 -15.84157 -15.52640 -15.16938 -14.98929 -14.62973 -14.38933 -14.22970 -13.68280 -13.57757 -13.49147 -13.43848 -13.17594 -12.89418 -12.78013 -12.71172 -12.51671 -12.27498 -12.18578 -11.84935 -11.76444 -11.68748 -11.46483 -11.17754 -11.13289 -10.99921 -10.85873 -10.78939 -10.63340 -10.46924 -10.23098 -9.85042 -9.59355 -9.23280 -9.19194 -8.92345 -8.74110 -8.57928 -7.97974 -7.82377 -6.21961 -4.29990 1.30724 1.41912 1.49851 1.53374 3.11117 3.19709 3.27378 3.28787 3.36587 3.73232 3.88912 4.22096 4.31605 4.67550 4.68660 4.69850 4.88796 4.94205 4.99454 5.02226 5.05148 5.10978 5.17497 5.24218 5.25017 5.31623 5.40208 5.45569 5.50466 5.52933 5.59399 5.65890 5.71662 5.76059 5.79941 5.90437 6.03668 6.07889 6.14846 6.17806 6.30357 6.35828 6.37815 6.44026 6.53808 6.60108 6.70263 6.82540 6.84681 6.94342 7.14357 7.40851 7.44877 7.71928 8.00563 8.19363 8.25358 8.74203 8.94742 9.38345 10.84715 Molecular weight = 368.19amu Principal moments of inertia in cm(-1) A = 0.007531 B = 0.002613 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3717.133652 B =10715.052065 C =13279.515604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.320 6.320 4 C 0.119 3.881 5 C -0.150 4.150 6 C -0.077 4.077 7 C -0.109 4.109 8 C -0.059 4.059 9 C -0.128 4.128 10 C 0.519 3.481 11 O -0.576 6.576 12 N -0.591 5.591 13 C 0.238 3.762 14 C -0.540 4.540 15 H 0.061 0.939 16 C 0.067 3.933 17 N -0.888 5.888 18 Si 0.895 3.105 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.273 1.273 22 C 0.160 3.840 23 C -0.144 4.144 24 C -0.056 4.056 25 C -0.182 4.182 26 C 0.089 3.911 27 N -0.489 5.489 28 C 0.114 3.886 29 C -0.074 4.074 30 C -0.206 4.206 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.104 0.896 41 H 0.088 0.912 42 H 0.036 0.964 43 H 0.039 0.961 44 H 0.266 0.734 45 H 0.090 0.910 46 H 0.083 0.917 47 H 0.138 0.862 48 H 0.129 0.871 49 H 0.149 0.851 50 H 0.157 0.843 51 H 0.125 0.875 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.866 1.791 -11.866 13.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.234 6.234 4 C 0.074 3.926 5 C -0.169 4.169 6 C -0.095 4.095 7 C -0.109 4.109 8 C -0.096 4.096 9 C -0.168 4.168 10 C 0.308 3.692 11 O -0.458 6.458 12 N -0.321 5.321 13 C 0.118 3.882 14 C -0.579 4.579 15 H 0.080 0.920 16 C -0.136 4.136 17 N -0.526 5.526 18 Si 0.722 3.278 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.198 1.198 22 C 0.036 3.964 23 C -0.148 4.148 24 C -0.083 4.083 25 C -0.201 4.201 26 C -0.068 4.068 27 N -0.198 5.198 28 C -0.043 4.043 29 C -0.092 4.092 30 C -0.224 4.224 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.123 0.877 41 H 0.107 0.893 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.075 0.925 45 H 0.108 0.892 46 H 0.101 0.899 47 H 0.155 0.845 48 H 0.147 0.853 49 H 0.167 0.833 50 H 0.175 0.825 51 H 0.143 0.857 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.745 2.422 -11.391 12.986 hybrid contribution -0.238 -1.656 -0.126 1.678 sum -5.983 0.765 -11.517 13.001 Atomic orbital electron populations 1.21770 0.92905 1.02743 1.03440 1.22750 0.95705 0.82242 1.01425 1.86039 1.19345 1.29052 1.88964 1.18956 0.81990 0.94253 0.97414 1.20370 0.95184 0.94639 1.06706 1.20882 0.91972 0.98870 0.97733 1.19891 0.96054 0.92940 1.02021 1.20288 0.89619 1.03398 0.96340 1.21602 0.92361 1.05437 0.97397 1.20565 0.90014 0.75424 0.83147 1.90560 1.70521 1.53206 1.31537 1.48267 1.06289 1.69233 1.08267 1.19464 0.92270 0.97416 0.79050 1.21457 1.36750 0.92768 1.06901 0.92045 1.24925 0.94899 0.97607 0.96188 1.69919 1.35857 1.32557 1.14253 0.86544 0.77664 0.84749 0.78828 1.20475 1.21080 1.19782 1.20121 0.82897 0.89641 1.03738 1.21446 1.00308 0.98895 0.94110 1.21662 0.93825 0.93970 0.98819 1.22102 1.02985 0.95682 0.99376 1.22690 0.96252 0.99865 0.88033 1.67701 1.12235 1.08715 1.31133 1.22810 0.93678 0.89803 0.98004 1.20888 0.94136 0.97052 0.97099 1.21193 0.94382 0.97813 1.09040 0.91505 0.91639 0.90475 0.92187 0.91975 0.85492 0.85391 0.90855 0.90656 0.87745 0.89332 0.94643 0.94283 0.92457 0.89164 0.89867 0.84455 0.85294 0.83325 0.82544 0.85655 0.85785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.28 37.16 0.38 -0.69 16 2 C 0.05 0.50 5.46 37.16 0.20 0.70 16 3 O -0.32 -4.02 10.14 -19.44 -0.20 -4.22 16 4 C 0.12 1.60 6.69 -39.22 -0.26 1.34 16 5 C -0.15 -1.98 9.99 -39.44 -0.39 -2.38 16 6 C -0.08 -1.02 9.69 -39.60 -0.38 -1.40 16 7 C -0.11 -1.54 5.13 -104.60 -0.54 -2.08 16 8 C -0.06 -0.88 4.63 -27.89 -0.13 -1.01 16 9 C -0.13 -2.24 4.24 -27.88 -0.12 -2.36 16 10 C 0.52 10.06 7.67 -10.98 -0.08 9.98 16 11 O -0.58 -11.67 15.21 5.56 0.08 -11.59 16 12 N -0.59 -11.68 2.44 -176.43 -0.43 -12.11 16 13 C 0.24 5.37 4.97 -5.20 -0.03 5.35 16 14 C -0.54 -13.40 9.29 -34.44 -0.32 -13.72 16 15 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 16 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -23.93 13.29 55.43 0.74 -23.20 16 18 Si 0.89 20.05 29.54 -169.99 -5.02 15.03 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 22 C 0.16 2.79 5.56 -5.19 -0.03 2.76 16 23 C -0.14 -2.36 5.48 -104.48 -0.57 -2.94 16 24 C -0.06 -0.85 9.86 -39.28 -0.39 -1.24 16 25 C -0.18 -2.38 10.11 -39.44 -0.40 -2.78 16 26 C 0.09 1.22 11.18 -17.55 -0.20 1.02 16 27 N -0.49 -8.02 10.36 -13.25 -0.14 -8.15 16 28 C 0.11 1.90 10.86 -17.55 -0.19 1.71 16 29 C -0.07 -1.01 9.69 -39.61 -0.38 -1.39 16 30 C -0.21 -2.66 9.04 -39.43 -0.36 -3.01 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 35 H 0.06 0.56 7.67 -51.93 -0.40 0.16 16 36 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 37 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 38 H 0.07 1.08 8.04 -51.93 -0.42 0.66 16 39 H 0.07 1.14 8.04 -51.93 -0.42 0.72 16 40 H 0.10 1.97 8.02 -51.93 -0.42 1.55 16 41 H 0.09 1.55 7.39 -51.93 -0.38 1.16 16 42 H 0.04 0.84 8.07 -51.93 -0.42 0.43 16 43 H 0.04 0.93 6.43 -51.93 -0.33 0.60 16 44 H 0.27 6.86 8.31 -40.82 -0.34 6.53 16 45 H 0.09 1.53 8.02 -51.93 -0.42 1.11 16 46 H 0.08 1.42 7.38 -51.93 -0.38 1.04 16 47 H 0.14 2.08 7.70 -52.49 -0.40 1.67 16 48 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 49 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 50 H 0.16 2.55 8.06 -52.49 -0.42 2.13 16 51 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 52 H 0.12 1.33 6.30 -52.49 -0.33 1.00 16 LS Contribution 437.20 15.07 6.59 6.59 Total: -1.00 -29.58 437.20 -10.73 -40.31 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -8.07 Total: 7.85 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -4.28 Total: -10.51 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: 0.17 Total: -43.46 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.11 Total: -15.80 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 6.59 Total: 6.59 kcal Total: -29.58 -10.73 -40.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069530946.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.678 kcal (2) G-P(sol) polarization free energy of solvation -29.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds