Wall clock time and date at job start Tue Mar 31 2020 06:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38264 * 119.99887 * 2 1 4 4 C 1.38221 * 119.99820 * 179.74424 * 3 2 1 5 5 C 1.38256 * 119.99634 * 0.52361 * 4 3 2 6 6 S 1.76204 * 119.99488 * 179.76700 * 5 4 3 7 7 O 1.42095 * 106.40326 * 23.52462 * 6 5 4 8 8 O 1.42102 * 106.39769 * 156.44387 * 6 5 4 9 9 N 1.65594 * 107.22193 * 269.98123 * 6 5 4 10 10 C 1.46500 * 120.00167 * 89.99894 * 9 6 5 11 11 C 1.50697 * 109.46858 * 95.00199 * 10 9 6 12 12 H 1.08002 * 120.00354 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99791 * 180.02562 * 11 10 9 14 14 N 1.31518 * 120.00410 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00003 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46988 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47143 * 119.99802 * 15 13 11 18 18 H 1.48496 * 109.47391 * 240.00230 * 15 13 11 19 19 C 1.46505 * 120.00189 * 270.00747 * 9 6 5 20 20 H 1.09002 * 109.46562 * 359.97438 * 19 9 6 21 21 C 1.53006 * 109.46624 * 239.99769 * 19 9 6 22 22 C 1.52992 * 109.47517 * 119.99798 * 19 9 6 23 23 C 1.52998 * 117.49796 * 248.61927 * 22 19 9 24 24 C 1.52994 * 60.00257 * 252.51022 * 23 22 19 25 25 C 1.38212 * 120.00613 * 359.75086 * 5 4 3 26 26 C 1.38215 * 120.00290 * 180.26989 * 2 1 3 27 27 N 1.48020 * 119.99732 * 0.02562 * 26 2 1 28 28 O 1.21803 * 119.99881 * 173.45355 * 27 26 2 29 29 O 1.21800 * 119.99978 * 353.46149 * 27 26 2 30 30 H 1.09000 * 109.47418 * 262.80536 * 1 2 3 31 31 H 1.09002 * 109.47262 * 142.80355 * 1 2 3 32 32 H 1.09000 * 109.47074 * 22.80735 * 1 2 3 33 33 H 1.07993 * 120.00209 * 0.02562 * 3 2 1 34 34 H 1.07991 * 119.99590 * 180.29739 * 4 3 2 35 35 H 1.08996 * 109.47379 * 215.00650 * 10 9 6 36 36 H 1.09005 * 109.47173 * 335.00455 * 10 9 6 37 37 H 0.96999 * 120.00227 * 179.97438 * 14 13 11 38 38 H 1.09005 * 109.47321 * 59.99795 * 21 19 9 39 39 H 1.09005 * 109.46647 * 179.97438 * 21 19 9 40 40 H 1.08994 * 109.46977 * 299.99326 * 21 19 9 41 41 H 1.08995 * 115.55351 * 34.32739 * 22 19 9 42 42 H 1.09001 * 117.50356 * 0.02562 * 23 22 19 43 43 H 1.09000 * 117.50161 * 145.01613 * 23 22 19 44 44 H 1.09001 * 117.50096 * 252.51251 * 24 23 22 45 45 H 1.08995 * 117.49760 * 107.48968 * 24 23 22 46 46 H 1.07991 * 120.00437 * 179.97438 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0053 5 6 4.2717 0.0000 -0.0003 6 16 6.0337 0.0001 0.0004 7 8 6.4347 1.2473 0.5507 8 8 6.4347 -1.2521 0.5392 9 7 6.5245 0.0073 -1.5812 10 6 6.7416 1.2792 -2.2750 11 6 8.1996 1.6520 -2.1961 12 1 8.8951 1.0059 -1.6810 13 6 8.6457 2.8179 -2.7815 14 7 7.7987 3.6049 -3.4083 15 14 10.4529 3.2803 -2.6831 16 1 11.1908 2.2356 -1.9286 17 1 11.0118 3.3874 -4.0548 18 1 10.5928 4.5852 -1.9883 19 6 6.7415 -1.2582 -2.2866 20 1 6.5319 -2.0898 -1.6137 21 6 8.1954 -1.3371 -2.7568 22 6 5.8092 -1.3337 -3.4973 23 6 4.6787 -2.3637 -3.4551 24 6 5.8844 -2.5884 -4.3697 25 6 3.5807 -1.1969 -0.0060 26 6 2.1981 -1.1969 -0.0056 27 7 1.4580 -2.4788 -0.0122 28 8 2.0611 -3.5296 -0.1375 29 8 0.2459 -2.4828 0.1074 30 1 -0.3634 -0.1287 1.0195 31 1 -0.3634 -0.8186 -0.6213 32 1 -0.3633 0.9473 -0.3984 33 1 1.6583 2.1327 0.0004 34 1 4.1203 2.1327 0.0102 35 1 6.4485 1.1777 -3.3199 36 1 6.1415 2.0575 -1.8033 37 1 8.1125 4.4254 -3.8198 38 1 8.8597 -1.2833 -1.8943 39 1 8.3570 -2.2789 -3.2813 40 1 8.4053 -0.5055 -3.4295 41 1 5.6082 -0.3855 -3.9957 42 1 4.5988 -2.9873 -2.5647 43 1 3.7334 -2.0932 -3.9257 44 1 5.7325 -2.4656 -5.4421 45 1 6.5981 -3.3600 -4.0811 46 1 4.1206 -2.1322 -0.0108 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069599263.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:10 Heat of formation + Delta-G solvation = -19.976741 kcal Electronic energy + Delta-G solvation = -32968.015207 eV Core-core repulsion = 28568.365041 eV Total energy + Delta-G solvation = -4399.650166 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 368.128 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.40992 -39.73300 -38.26514 -36.92534 -36.80909 -35.48588 -35.08651 -33.53019 -32.55407 -32.20234 -29.67570 -28.26921 -27.09983 -26.29769 -23.59214 -23.08396 -22.84786 -22.56913 -22.07844 -20.04617 -19.46148 -18.81761 -18.16395 -17.76517 -17.29688 -17.09848 -16.48184 -16.24048 -15.67620 -15.65531 -14.76739 -14.49967 -14.47112 -14.39780 -14.19951 -13.50721 -13.12354 -13.02384 -12.82296 -12.66505 -12.50577 -12.41097 -12.21163 -11.91503 -11.76284 -11.68403 -11.54996 -11.45379 -11.30524 -11.29373 -11.12063 -11.08263 -11.02366 -10.80362 -10.62584 -10.43255 -10.25473 -10.02177 -9.95908 -9.83357 -9.68223 -9.52396 -8.53018 -8.25009 -6.15896 -4.18330 -0.33901 0.27082 0.70181 1.13777 1.22838 2.74672 3.25201 3.33827 3.35879 3.40760 3.95853 3.97524 4.02931 4.12380 4.33281 4.37698 4.52443 4.64697 4.85565 4.98376 5.00521 5.09859 5.12567 5.16147 5.19424 5.22095 5.33387 5.45866 5.53295 5.57707 5.63512 5.70236 5.75458 5.88865 5.92924 6.00033 6.06934 6.23889 6.30891 6.33381 6.50014 6.62280 7.05428 7.07497 7.23604 7.46385 7.51870 7.82053 8.08701 8.83644 9.46435 10.92808 Molecular weight = 368.13amu Principal moments of inertia in cm(-1) A = 0.012386 B = 0.003673 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.989223 B = 7621.280763 C = 8512.750659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.025 3.975 3 C -0.143 4.143 4 C 0.038 3.962 5 C -0.682 4.682 6 S 2.681 3.319 7 O -0.930 6.930 8 O -0.965 6.965 9 N -0.968 5.968 10 C 0.254 3.746 11 C -0.522 4.522 12 H 0.066 0.934 13 C 0.064 3.936 14 N -0.896 5.896 15 Si 0.894 3.106 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.283 1.283 19 C 0.183 3.817 20 H 0.084 0.916 21 C -0.150 4.150 22 C -0.156 4.156 23 C -0.192 4.192 24 C -0.170 4.170 25 C 0.050 3.950 26 C -0.073 4.073 27 N 0.036 4.964 28 O -0.161 6.161 29 O -0.162 6.162 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.078 0.922 33 H 0.155 0.845 34 H 0.163 0.837 35 H 0.042 0.958 36 H 0.037 0.963 37 H 0.263 0.737 38 H 0.056 0.944 39 H 0.050 0.950 40 H 0.087 0.913 41 H 0.116 0.884 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.095 0.905 46 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.256 -7.083 2.538 14.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.024 3.976 3 C -0.162 4.162 4 C 0.019 3.981 5 C -0.763 4.763 6 S 2.766 3.234 7 O -0.920 6.920 8 O -0.956 6.956 9 N -0.808 5.808 10 C 0.132 3.868 11 C -0.562 4.562 12 H 0.084 0.916 13 C -0.139 4.139 14 N -0.535 5.535 15 Si 0.722 3.278 16 H -0.195 1.195 17 H -0.210 1.210 18 H -0.209 1.209 19 C 0.076 3.924 20 H 0.102 0.898 21 C -0.209 4.209 22 C -0.176 4.176 23 C -0.229 4.229 24 C -0.208 4.208 25 C 0.030 3.970 26 C -0.157 4.157 27 N 0.553 4.447 28 O -0.376 6.376 29 O -0.376 6.376 30 H 0.112 0.888 31 H 0.120 0.880 32 H 0.097 0.903 33 H 0.173 0.827 34 H 0.181 0.819 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.106 0.894 41 H 0.134 0.866 42 H 0.110 0.890 43 H 0.105 0.895 44 H 0.110 0.890 45 H 0.114 0.886 46 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -11.462 -6.293 3.197 13.461 hybrid contribution -0.010 0.143 -0.385 0.411 sum -11.472 -6.149 2.812 13.317 Atomic orbital electron populations 1.21411 0.88168 1.04928 1.04887 1.20138 0.98176 0.90640 0.88660 1.21323 0.94193 0.97409 1.03267 1.21516 0.94593 0.97965 0.84044 1.31954 1.30608 0.97479 1.16292 1.02638 0.72966 0.73838 0.73924 1.93630 1.79133 1.43011 1.76270 1.93539 1.80321 1.44224 1.77478 1.57543 1.78974 1.13704 1.30616 1.19155 0.97494 0.76769 0.93336 1.21512 0.93441 1.06252 1.34967 0.91618 1.24900 0.97942 0.95950 0.95076 1.69914 1.34367 1.13101 1.36109 0.86501 0.84954 0.78686 0.77697 1.19541 1.21022 1.20888 1.20301 0.95572 0.84829 0.91696 0.89771 1.22090 0.94222 1.02146 1.02402 1.22805 0.99758 0.95036 0.99992 1.23051 0.93540 1.03827 1.02504 1.22861 1.00680 1.00029 0.97195 1.20707 0.91184 0.99345 0.85723 1.20990 0.92466 0.83574 1.18674 1.43479 1.01027 1.02651 0.97572 1.94571 1.70084 1.19821 1.53138 1.94449 0.96283 1.93670 1.53166 0.88841 0.88031 0.90316 0.82709 0.81945 0.94006 0.94502 0.92740 0.92450 0.93079 0.89415 0.86559 0.88982 0.89477 0.88967 0.88643 0.81812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.68 36.00 0.31 -0.82 16 2 C 0.03 0.28 5.88 -104.62 -0.62 -0.34 16 3 C -0.14 -1.46 9.67 -39.58 -0.38 -1.84 16 4 C 0.04 0.48 9.52 -39.58 -0.38 0.10 16 5 C -0.68 -9.96 5.97 -39.58 -0.24 -10.19 16 6 S 2.68 48.31 5.64 -107.50 -0.61 47.71 16 7 O -0.93 -19.63 16.25 -57.17 -0.93 -20.56 16 8 O -0.97 -18.27 15.85 -57.17 -0.91 -19.18 16 9 N -0.97 -17.93 2.73 -108.57 -0.30 -18.23 16 10 C 0.25 5.59 4.66 -5.19 -0.02 5.57 16 11 C -0.52 -13.12 7.53 -34.44 -0.26 -13.38 16 12 H 0.07 1.66 7.07 -52.49 -0.37 1.29 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.90 -24.21 13.29 55.43 0.74 -23.47 16 15 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 16 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 C 0.18 2.97 2.86 -67.93 -0.19 2.78 16 20 H 0.08 1.28 6.67 -51.93 -0.35 0.94 16 21 C -0.15 -2.49 8.04 37.16 0.30 -2.19 16 22 C -0.16 -2.27 5.17 -90.62 -0.47 -2.74 16 23 C -0.19 -2.43 10.18 -26.73 -0.27 -2.70 16 24 C -0.17 -2.07 9.73 -26.73 -0.26 -2.33 16 25 C 0.05 0.70 9.03 -39.58 -0.36 0.34 16 26 C -0.07 -0.95 6.83 -79.95 -0.55 -1.50 16 27 N 0.04 0.50 4.45 33.96 0.15 0.65 16 28 O -0.16 -2.40 18.47 -29.46 -0.54 -2.94 16 29 O -0.16 -2.15 15.37 -29.46 -0.45 -2.60 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.10 0.92 5.87 -51.93 -0.30 0.62 16 32 H 0.08 0.47 8.03 -51.93 -0.42 0.05 16 33 H 0.16 1.06 8.05 -52.49 -0.42 0.63 16 34 H 0.16 1.98 7.62 -52.49 -0.40 1.58 16 35 H 0.04 0.94 6.39 -51.93 -0.33 0.61 16 36 H 0.04 0.85 7.61 -51.93 -0.40 0.46 16 37 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 38 H 0.06 0.99 7.93 -51.93 -0.41 0.58 16 39 H 0.05 0.70 7.29 -51.93 -0.38 0.32 16 40 H 0.09 1.64 6.65 -51.93 -0.35 1.30 16 41 H 0.12 1.85 6.54 -51.93 -0.34 1.51 16 42 H 0.09 1.13 8.05 -51.93 -0.42 0.72 16 43 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 44 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.10 1.08 7.61 -51.93 -0.40 0.68 16 46 H 0.16 2.20 7.19 -52.49 -0.38 1.83 16 LS Contribution 393.44 15.07 5.93 5.93 Total: -1.00 -30.25 393.44 -11.48 -41.72 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -6.06 Total: 3.13 kcal Atomic # 6 Polarization: -24.20 SS G_CDS: -3.48 Total: -27.68 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: 0.59 Total: -41.05 kcal Atomic # 8 Polarization: -42.45 SS G_CDS: -2.83 Total: -45.29 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 48.31 SS G_CDS: -0.61 Total: 47.71 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.25 -11.48 -41.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069599263.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.745 kcal (2) G-P(sol) polarization free energy of solvation -30.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds