Wall clock time and date at job start Tue Mar 31 2020 06:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38264 * 119.99344 * 2 1 4 4 C 1.38216 * 119.99458 * 180.23077 * 3 2 1 5 5 C 1.38260 * 119.99963 * 359.80922 * 4 3 2 6 6 N 1.48024 * 119.99812 * 179.97438 * 5 4 3 7 7 O 1.21798 * 119.99725 * 180.02562 * 6 5 4 8 8 O 1.21798 * 120.00046 * 0.02568 * 6 5 4 9 9 C 1.38210 * 120.00067 * 0.02562 * 5 4 3 10 10 C 1.38207 * 120.00559 * 179.80858 * 2 1 3 11 11 S 1.76205 * 119.99580 * 0.02562 * 10 2 1 12 12 O 1.42099 * 106.40320 * 179.36411 * 11 10 2 13 13 O 1.42092 * 106.40426 * 46.43963 * 11 10 2 14 14 N 1.65602 * 107.21636 * 292.90025 * 11 10 2 15 15 C 1.46504 * 119.99943 * 277.43713 * 14 11 10 16 16 C 1.50698 * 109.47329 * 265.00124 * 15 14 11 17 17 H 1.07993 * 120.00040 * 359.97438 * 16 15 14 18 18 C 1.37883 * 119.99767 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00068 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99818 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47065 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47470 * 119.99992 * 20 18 16 23 23 H 1.48500 * 109.47279 * 240.00336 * 20 18 16 24 24 C 1.46501 * 120.00100 * 97.44092 * 14 11 10 25 25 H 1.08995 * 109.47203 * 353.76768 * 24 14 11 26 26 C 1.53000 * 109.47210 * 113.77074 * 24 14 11 27 27 C 1.53000 * 109.46827 * 233.76662 * 24 14 11 28 28 C 1.52994 * 117.49919 * 248.61867 * 27 24 14 29 29 C 1.53000 * 60.00154 * 252.51327 * 28 27 24 30 30 H 1.09002 * 109.47115 * 264.63237 * 1 2 3 31 31 H 1.09003 * 109.47676 * 24.63964 * 1 2 3 32 32 H 1.09002 * 109.47221 * 144.64084 * 1 2 3 33 33 H 1.07993 * 120.00618 * 0.02562 * 3 2 1 34 34 H 1.08002 * 119.99760 * 179.79329 * 4 3 2 35 35 H 1.08004 * 119.99856 * 179.97438 * 9 5 4 36 36 H 1.09001 * 109.46917 * 25.00886 * 15 14 11 37 37 H 1.09002 * 109.47103 * 144.99990 * 15 14 11 38 38 H 0.97003 * 120.00098 * 179.97438 * 19 18 16 39 39 H 1.08995 * 109.47287 * 59.99746 * 26 24 14 40 40 H 1.08993 * 109.46993 * 180.02562 * 26 24 14 41 41 H 1.09000 * 109.46808 * 299.99909 * 26 24 14 42 42 H 1.09000 * 115.55157 * 34.33138 * 27 24 14 43 43 H 1.09002 * 117.50432 * 0.02562 * 28 27 24 44 44 H 1.09006 * 117.50144 * 145.02482 * 28 27 24 45 45 H 1.08999 * 117.49965 * 252.50718 * 29 28 27 46 46 H 1.09000 * 117.51491 * 107.48172 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5803 1.1975 -0.0048 5 6 4.2716 0.0002 -0.0057 6 7 5.7519 0.0002 -0.0114 7 8 6.3609 -1.0546 -0.0126 8 8 6.3608 1.0551 -0.0149 9 6 3.5806 -1.1968 -0.0022 10 6 2.1981 -1.1968 0.0040 11 16 1.3172 -2.7228 0.0084 12 8 2.2970 -3.7519 -0.0031 13 8 0.3034 -2.6038 -0.9801 14 7 0.5385 -2.8350 1.4656 15 6 1.2595 -3.3171 2.6463 16 6 1.0204 -4.7957 2.8120 17 1 0.3937 -5.3235 2.1085 18 6 1.6019 -5.4747 3.8617 19 7 2.3647 -4.8319 4.7187 20 14 1.3060 -7.3077 4.0667 21 1 0.4184 -7.7906 2.9785 22 1 2.6028 -8.0286 4.0036 23 1 0.6621 -7.5613 5.3806 24 6 -0.8715 -2.4523 1.5741 25 1 -1.2039 -2.0187 0.6309 26 6 -1.7131 -3.6901 1.8911 27 6 -1.0358 -1.4233 2.6944 28 6 -1.7876 -1.8626 3.9524 29 6 -2.4455 -0.8948 2.9669 30 1 -0.3633 -0.0961 1.0232 31 1 -0.3634 0.9341 -0.4284 32 1 -0.3634 -0.8381 -0.5947 33 1 1.6582 2.1327 0.0004 34 1 4.1203 2.1329 -0.0082 35 1 4.1207 -2.1321 -0.0033 36 1 2.3266 -3.1334 2.5204 37 1 0.9020 -2.7899 3.5308 38 1 2.7734 -5.3095 5.4575 39 1 -1.3807 -4.1236 2.8343 40 1 -2.7621 -3.4054 1.9714 41 1 -1.5959 -4.4232 1.0930 42 1 -0.2049 -0.7292 2.8208 43 1 -2.1648 -2.8849 3.9822 44 1 -1.4513 -1.4577 4.9070 45 1 -2.5421 0.1469 3.2730 46 1 -3.2558 -1.2799 2.3478 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069599374.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:15 Heat of formation + Delta-G solvation = -12.554042 kcal Electronic energy + Delta-G solvation = -33229.261643 eV Core-core repulsion = 28829.933350 eV Total energy + Delta-G solvation = -4399.328293 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 368.128 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -42.21770 -39.82314 -38.62258 -37.05916 -36.58558 -35.52743 -34.98221 -33.66270 -32.52003 -31.86498 -29.57744 -28.83423 -27.08397 -25.34698 -24.03212 -23.90854 -22.76707 -22.15350 -21.99904 -20.07735 -19.34553 -18.73322 -18.10199 -17.57373 -17.31937 -16.80295 -16.42176 -16.14191 -16.04506 -15.78363 -14.92941 -14.74915 -14.52858 -14.49376 -14.00640 -13.54091 -13.11749 -12.93134 -12.87344 -12.61119 -12.37640 -12.34956 -12.04340 -11.86363 -11.62454 -11.59138 -11.50446 -11.41595 -11.28082 -11.25993 -11.15032 -11.12963 -10.92831 -10.76417 -10.64392 -10.54893 -10.19460 -10.10286 -9.94868 -9.82939 -9.58030 -9.48015 -8.49787 -8.27886 -6.11867 -4.14500 -0.31238 0.32674 0.67312 1.17337 1.32450 2.77349 3.27320 3.31884 3.36792 3.40829 3.94510 4.00254 4.03445 4.23398 4.28915 4.39935 4.46077 4.62116 4.85326 4.96224 5.03257 5.11726 5.15527 5.16684 5.23692 5.28255 5.35756 5.44282 5.45359 5.52336 5.68886 5.73912 5.79649 5.85194 5.92427 6.05450 6.14998 6.28124 6.28818 6.34479 6.42458 6.54793 6.96581 7.10380 7.23938 7.45497 7.60732 7.85344 8.12093 8.87145 9.50067 10.96955 Molecular weight = 368.13amu Principal moments of inertia in cm(-1) A = 0.008897 B = 0.004460 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3146.315519 B = 6276.780257 C = 7965.351558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.073 3.927 3 C -0.145 4.145 4 C -0.008 4.008 5 C -0.076 4.076 6 N 0.032 4.968 7 O -0.151 6.151 8 O -0.166 6.166 9 C 0.053 3.947 10 C -0.682 4.682 11 S 2.683 3.317 12 O -0.929 6.929 13 O -0.966 6.966 14 N -0.968 5.968 15 C 0.255 3.745 16 C -0.521 4.521 17 H 0.066 0.934 18 C 0.064 3.936 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.285 1.285 24 C 0.177 3.823 25 H 0.093 0.907 26 C -0.162 4.162 27 C -0.161 4.161 28 C -0.166 4.166 29 C -0.185 4.185 30 H 0.111 0.889 31 H 0.089 0.911 32 H 0.121 0.879 33 H 0.153 0.847 34 H 0.158 0.842 35 H 0.173 0.827 36 H 0.032 0.968 37 H 0.046 0.954 38 H 0.263 0.737 39 H 0.092 0.908 40 H 0.052 0.948 41 H 0.055 0.945 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.365 13.835 -6.626 17.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.072 3.928 3 C -0.164 4.164 4 C -0.027 4.027 5 C -0.159 4.159 6 N 0.551 4.449 7 O -0.368 6.368 8 O -0.380 6.380 9 C 0.033 3.967 10 C -0.763 4.763 11 S 2.769 3.231 12 O -0.919 6.919 13 O -0.956 6.956 14 N -0.808 5.808 15 C 0.134 3.866 16 C -0.561 4.561 17 H 0.084 0.916 18 C -0.139 4.139 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.211 1.211 24 C 0.071 3.929 25 H 0.111 0.889 26 C -0.221 4.221 27 C -0.181 4.181 28 C -0.202 4.202 29 C -0.222 4.222 30 H 0.129 0.871 31 H 0.108 0.892 32 H 0.139 0.861 33 H 0.171 0.829 34 H 0.175 0.825 35 H 0.190 0.810 36 H 0.050 0.950 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.111 0.889 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.122 0.878 43 H 0.125 0.875 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.914 13.263 -7.146 17.018 hybrid contribution 0.910 -0.157 0.638 1.123 sum -7.004 13.106 -6.509 16.223 Atomic orbital electron populations 1.22243 0.89135 1.07494 1.06441 1.20040 0.97181 0.91448 0.84118 1.21230 0.92535 0.98905 1.03730 1.21249 0.94840 0.97085 0.89497 1.21146 0.79741 0.97068 1.17988 1.43513 1.03338 1.00547 0.97482 1.94600 1.68805 1.20454 1.52988 1.94503 1.68936 1.20775 1.53832 1.20871 0.92716 0.98509 0.84648 1.31713 1.04609 1.22854 1.17171 1.02588 0.73693 0.73318 0.73524 1.93635 1.61066 1.51291 1.85887 1.93457 1.57414 1.86578 1.58112 1.57540 1.17921 1.77729 1.27651 1.19155 0.90645 0.95163 0.81656 1.21468 1.30304 0.93149 1.11134 0.91632 1.24901 0.94844 0.98396 0.95731 1.69917 1.32029 1.36195 1.15186 0.86515 0.78242 0.85322 0.77825 1.19594 1.20854 1.21088 1.20417 0.80938 0.94282 0.97306 0.88935 1.22323 0.97515 0.97418 1.04838 1.22623 0.94926 1.01505 0.99013 1.23076 1.03069 1.00410 0.93692 1.22999 0.95577 0.99201 1.04451 0.87139 0.89187 0.86144 0.82890 0.82478 0.80950 0.95019 0.93580 0.92734 0.88883 0.92962 0.92575 0.87808 0.87489 0.89268 0.89283 0.88773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.95 8.10 36.01 0.29 -1.66 16 2 C 0.07 0.87 5.87 -104.62 -0.61 0.26 16 3 C -0.14 -1.40 9.68 -39.58 -0.38 -1.78 16 4 C -0.01 -0.08 9.56 -39.58 -0.38 -0.46 16 5 C -0.08 -1.09 6.85 -79.95 -0.55 -1.64 16 6 N 0.03 0.50 4.45 33.96 0.15 0.66 16 7 O -0.15 -2.64 18.45 -29.46 -0.54 -3.18 16 8 O -0.17 -2.57 18.45 -29.46 -0.54 -3.11 16 9 C 0.05 0.83 9.06 -39.59 -0.36 0.47 16 10 C -0.68 -10.29 5.91 -39.59 -0.23 -10.52 16 11 S 2.68 48.04 5.02 -107.50 -0.54 47.50 16 12 O -0.93 -20.35 16.22 -57.17 -0.93 -21.28 16 13 O -0.97 -16.90 13.96 -57.17 -0.80 -17.69 16 14 N -0.97 -17.41 2.72 -108.57 -0.30 -17.70 16 15 C 0.26 5.69 4.79 -5.19 -0.02 5.67 16 16 C -0.52 -13.18 7.61 -34.44 -0.26 -13.44 16 17 H 0.07 1.65 7.15 -52.49 -0.38 1.28 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -24.76 13.29 55.43 0.74 -24.03 16 20 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 21 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 C 0.18 2.61 2.01 -67.93 -0.14 2.47 16 25 H 0.09 1.20 4.86 -51.93 -0.25 0.95 16 26 C -0.16 -2.49 6.93 37.16 0.26 -2.23 16 27 C -0.16 -2.06 2.94 -90.62 -0.27 -2.33 16 28 C -0.17 -2.13 9.54 -26.73 -0.26 -2.38 16 29 C -0.18 -1.88 9.90 -26.73 -0.26 -2.14 16 30 H 0.11 1.03 4.36 -51.93 -0.23 0.81 16 31 H 0.09 0.60 8.05 -51.93 -0.42 0.19 16 32 H 0.12 1.39 4.00 -51.93 -0.21 1.19 16 33 H 0.15 0.89 8.06 -52.49 -0.42 0.46 16 34 H 0.16 1.32 7.61 -52.49 -0.40 0.92 16 35 H 0.17 2.85 6.89 -52.48 -0.36 2.49 16 36 H 0.03 0.78 7.81 -51.93 -0.41 0.37 16 37 H 0.05 1.04 7.01 -51.93 -0.36 0.68 16 38 H 0.26 6.97 8.31 -40.82 -0.34 6.64 16 39 H 0.09 1.64 5.44 -51.93 -0.28 1.36 16 40 H 0.05 0.64 7.08 -51.93 -0.37 0.27 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.10 1.32 7.34 -51.93 -0.38 0.94 16 43 H 0.11 1.46 5.85 -51.93 -0.30 1.15 16 44 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.09 0.87 7.61 -51.93 -0.40 0.48 16 LS Contribution 379.48 15.07 5.72 5.72 Total: -1.00 -31.06 379.48 -10.90 -41.96 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -5.57 Total: 3.46 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: -3.27 Total: -28.12 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: 0.59 Total: -41.07 kcal Atomic # 8 Polarization: -42.45 SS G_CDS: -2.81 Total: -45.26 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 48.04 SS G_CDS: -0.54 Total: 47.50 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.06 -10.90 -41.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069599374.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.409 kcal (2) G-P(sol) polarization free energy of solvation -31.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds