Wall clock time and date at job start Tue Mar 31 2020 06:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38253 * 120.00469 * 2 1 4 4 C 1.38219 * 120.00441 * 180.22750 * 3 2 1 5 5 C 1.38259 * 119.99625 * 359.81709 * 4 3 2 6 6 N 1.48016 * 119.99884 * 179.97438 * 5 4 3 7 7 O 1.21795 * 119.99962 * 180.02562 * 6 5 4 8 8 O 1.21801 * 120.00113 * 0.02562 * 6 5 4 9 9 C 1.38214 * 119.99921 * 359.97438 * 5 4 3 10 10 C 1.38217 * 119.99825 * 179.81136 * 2 1 3 11 11 S 1.76197 * 119.99919 * 359.97438 * 10 2 1 12 12 O 1.42102 * 106.40059 * 181.14235 * 11 10 2 13 13 O 1.42098 * 106.40207 * 48.22649 * 11 10 2 14 14 N 1.65591 * 107.22001 * 294.68448 * 11 10 2 15 15 C 1.46502 * 120.00251 * 99.51407 * 14 11 10 16 16 C 1.50696 * 109.47561 * 95.46847 * 15 14 11 17 17 H 1.08001 * 119.99359 * 359.97438 * 16 15 14 18 18 C 1.37870 * 120.00235 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00017 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99896 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47429 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47205 * 120.00229 * 20 18 16 23 23 H 1.48503 * 109.47130 * 239.99876 * 20 18 16 24 24 C 1.46503 * 120.00139 * 279.51369 * 14 11 10 25 25 H 1.08999 * 109.47060 * 359.97438 * 24 14 11 26 26 C 1.53000 * 109.47216 * 240.00111 * 24 14 11 27 27 C 1.53002 * 109.46984 * 119.99818 * 24 14 11 28 28 C 1.53004 * 117.49529 * 248.62041 * 27 24 14 29 29 C 1.53005 * 117.49287 * 180.02562 * 27 24 14 30 30 H 1.09004 * 109.47290 * 263.99645 * 1 2 3 31 31 H 1.09008 * 109.47055 * 23.99676 * 1 2 3 32 32 H 1.09001 * 109.47471 * 143.99205 * 1 2 3 33 33 H 1.08001 * 120.00169 * 0.02562 * 3 2 1 34 34 H 1.08002 * 120.00091 * 179.79106 * 4 3 2 35 35 H 1.07999 * 119.99836 * 179.97438 * 9 5 4 36 36 H 1.09003 * 109.46903 * 215.47321 * 15 14 11 37 37 H 1.09001 * 109.46944 * 335.46529 * 15 14 11 38 38 H 0.97002 * 119.99842 * 180.02562 * 19 18 16 39 39 H 1.08993 * 109.47389 * 59.99439 * 26 24 14 40 40 H 1.08994 * 109.47320 * 180.02562 * 26 24 14 41 41 H 1.09004 * 109.47161 * 299.99665 * 26 24 14 42 42 H 1.08997 * 115.55338 * 34.33703 * 27 24 14 43 43 H 1.08998 * 117.50113 * 0.02562 * 28 27 24 44 44 H 1.09001 * 117.49527 * 145.02830 * 28 27 24 45 45 H 1.09002 * 117.49547 * 214.97792 * 29 27 24 46 46 H 1.08994 * 117.50551 * 0.02562 * 29 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5805 1.1972 -0.0048 5 6 4.2717 -0.0002 -0.0057 6 7 5.7518 -0.0002 -0.0113 7 8 6.3607 -1.0550 -0.0126 8 8 6.3609 1.0546 -0.0147 9 6 3.5805 -1.1971 -0.0013 10 6 2.1980 -1.1970 0.0039 11 16 1.3169 -2.7229 0.0096 12 8 2.2966 -3.7517 0.0401 13 8 0.3295 -2.6198 -1.0070 14 7 0.5003 -2.8120 1.4474 15 6 -0.9235 -2.4715 1.5036 16 6 -1.7459 -3.7284 1.3829 17 1 -1.2569 -4.6853 1.2747 18 6 -3.1225 -3.6568 1.4096 19 7 -3.7179 -2.4916 1.5408 20 14 -4.1419 -5.2149 1.2592 21 1 -3.2390 -6.3859 1.1225 22 1 -4.9819 -5.3759 2.4732 23 1 -5.0153 -5.1214 0.0619 24 6 1.2016 -3.2315 2.6634 25 1 2.2446 -3.4420 2.4270 26 6 0.5415 -4.4932 3.2233 27 6 1.1299 -2.1132 3.7050 28 6 2.4307 -1.3859 4.0514 29 6 1.8088 -2.3596 5.0539 30 1 -0.3634 -0.1075 1.0220 31 1 -0.3633 0.9389 -0.4180 32 1 -0.3634 -0.8313 -0.6042 33 1 1.6584 2.1326 0.0004 34 1 4.1205 2.1326 -0.0082 35 1 4.1205 -2.1324 -0.0025 36 1 -1.1430 -1.9833 2.4532 37 1 -1.1683 -1.7969 0.6832 38 1 -4.6864 -2.4412 1.5599 39 1 0.5925 -5.2899 2.4812 40 1 1.0630 -4.8050 4.1282 41 1 -0.5016 -4.2832 3.4597 42 1 0.2105 -1.5277 3.7037 43 1 3.3375 -1.7040 3.5369 44 1 2.3673 -0.3216 4.2779 45 1 1.3362 -1.9360 5.9400 46 1 2.3070 -3.3181 5.1990 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069599379.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:21 Heat of formation + Delta-G solvation = -18.027046 kcal Electronic energy + Delta-G solvation = -33315.879052 eV Core-core repulsion = 28916.313432 eV Total energy + Delta-G solvation = -4399.565621 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 368.128 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.31249 -39.81353 -38.32112 -37.10123 -36.69078 -35.55297 -35.18560 -33.60078 -32.59096 -31.89092 -29.79709 -28.70491 -27.16310 -25.24821 -23.92465 -23.62543 -22.88819 -22.16762 -22.07999 -20.09852 -19.60385 -18.82970 -18.27578 -17.67589 -17.46049 -16.80792 -16.25455 -16.20539 -15.96193 -15.74830 -14.78574 -14.56691 -14.53251 -14.43965 -14.09148 -13.56456 -13.12427 -12.84519 -12.79363 -12.57418 -12.38597 -12.30410 -12.25158 -11.82143 -11.78626 -11.70049 -11.54223 -11.47220 -11.34018 -11.30189 -11.26648 -11.13963 -11.08143 -10.73131 -10.60434 -10.45692 -10.30065 -10.06269 -10.00711 -9.84698 -9.59685 -9.53374 -8.54257 -8.28699 -6.19295 -4.21452 -0.35311 0.28905 0.66306 1.13082 1.24133 2.76378 3.23133 3.29991 3.32347 3.37569 3.92931 3.95044 4.06094 4.23555 4.33123 4.35490 4.48850 4.61744 4.80063 4.91697 5.03134 5.10534 5.11574 5.18053 5.26626 5.30738 5.37592 5.42779 5.50502 5.63342 5.67635 5.77945 5.84401 5.93159 5.94525 6.03427 6.16997 6.22152 6.26168 6.33074 6.45903 6.59005 7.02233 7.04378 7.21927 7.42121 7.50737 7.78852 8.05980 8.80339 9.43462 10.89250 Molecular weight = 368.13amu Principal moments of inertia in cm(-1) A = 0.013105 B = 0.003720 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.155370 B = 7525.605931 C = 8103.711405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.084 3.916 3 C -0.143 4.143 4 C -0.008 4.008 5 C -0.079 4.079 6 N 0.033 4.967 7 O -0.159 6.159 8 O -0.166 6.166 9 C 0.046 3.954 10 C -0.684 4.684 11 S 2.684 3.316 12 O -0.964 6.964 13 O -0.932 6.932 14 N -0.968 5.968 15 C 0.239 3.761 16 C -0.527 4.527 17 H 0.065 0.935 18 C 0.065 3.935 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.283 1.283 24 C 0.186 3.814 25 H 0.078 0.922 26 C -0.150 4.150 27 C -0.154 4.154 28 C -0.191 4.191 29 C -0.171 4.171 30 H 0.112 0.888 31 H 0.089 0.911 32 H 0.127 0.873 33 H 0.155 0.845 34 H 0.157 0.843 35 H 0.168 0.832 36 H 0.042 0.958 37 H 0.056 0.944 38 H 0.263 0.737 39 H 0.058 0.942 40 H 0.049 0.951 41 H 0.088 0.912 42 H 0.118 0.882 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.081 7.735 2.168 12.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.083 3.917 3 C -0.162 4.162 4 C -0.027 4.027 5 C -0.163 4.163 6 N 0.552 4.448 7 O -0.375 6.375 8 O -0.380 6.380 9 C 0.026 3.974 10 C -0.766 4.766 11 S 2.770 3.230 12 O -0.954 6.954 13 O -0.922 6.922 14 N -0.808 5.808 15 C 0.118 3.882 16 C -0.566 4.566 17 H 0.083 0.917 18 C -0.137 4.137 19 N -0.533 5.533 20 Si 0.720 3.280 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.209 1.209 24 C 0.080 3.920 25 H 0.096 0.904 26 C -0.209 4.209 27 C -0.174 4.174 28 C -0.228 4.228 29 C -0.208 4.208 30 H 0.130 0.870 31 H 0.108 0.892 32 H 0.145 0.855 33 H 0.172 0.828 34 H 0.174 0.826 35 H 0.186 0.814 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.107 0.893 42 H 0.136 0.864 43 H 0.105 0.895 44 H 0.107 0.893 45 H 0.111 0.889 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.220 7.269 1.483 11.834 hybrid contribution 0.098 0.118 0.242 0.286 sum 9.318 7.387 1.724 12.015 Atomic orbital electron populations 1.22213 0.88078 1.07762 1.06590 1.20182 0.97664 0.91240 0.82598 1.21293 0.92447 0.99121 1.03331 1.21245 0.94842 0.97021 0.89588 1.21106 0.79426 0.97120 1.18640 1.43536 1.03434 1.00473 0.97339 1.94568 1.68954 1.20571 1.53390 1.94515 1.68993 1.20755 1.53772 1.20780 0.92633 0.98160 0.85793 1.31764 1.04331 1.23165 1.17331 1.02582 0.73002 0.73262 0.74181 1.93537 1.62292 1.52706 1.86866 1.93565 1.57477 1.85800 1.55359 1.57504 1.20487 1.80538 1.22257 1.19536 0.72011 0.97434 0.99216 1.21535 0.90970 0.93752 1.50361 0.91650 1.24874 0.97707 0.96257 0.94889 1.69895 1.09849 1.23517 1.50043 0.86520 0.80278 0.83470 0.77702 1.19558 1.21004 1.20870 1.20239 0.95057 0.93140 0.83602 0.90384 1.22096 1.03323 0.95866 0.99631 1.22805 0.96949 1.01022 0.96637 1.23010 0.97172 0.97942 1.04724 1.22867 1.04023 1.00673 0.93287 0.87026 0.89225 0.85534 0.82771 0.82560 0.81435 0.94036 0.92626 0.92701 0.92303 0.93167 0.89325 0.86424 0.89460 0.89298 0.88881 0.88699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.51 7.92 36.00 0.29 -2.22 16 2 C 0.08 1.07 5.87 -104.63 -0.61 0.45 16 3 C -0.14 -1.41 9.68 -39.58 -0.38 -1.80 16 4 C -0.01 -0.08 9.56 -39.58 -0.38 -0.46 16 5 C -0.08 -1.03 6.85 -79.95 -0.55 -1.58 16 6 N 0.03 0.48 4.45 33.96 0.15 0.63 16 7 O -0.16 -2.43 18.45 -29.46 -0.54 -2.97 16 8 O -0.17 -2.34 18.45 -29.46 -0.54 -2.88 16 9 C 0.05 0.65 9.06 -39.58 -0.36 0.29 16 10 C -0.68 -9.93 5.91 -39.58 -0.23 -10.17 16 11 S 2.68 47.99 5.01 -107.50 -0.54 47.45 16 12 O -0.96 -18.49 15.87 -57.17 -0.91 -19.40 16 13 O -0.93 -19.21 14.31 -57.17 -0.82 -20.03 16 14 N -0.97 -17.23 2.68 -108.57 -0.29 -17.52 16 15 C 0.24 4.97 3.46 -5.19 -0.02 4.96 16 16 C -0.53 -12.83 7.50 -34.44 -0.26 -13.09 16 17 H 0.07 1.61 7.03 -52.49 -0.37 1.24 16 18 C 0.07 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -23.33 13.29 55.43 0.74 -22.59 16 20 Si 0.89 20.15 29.54 -169.99 -5.02 15.13 16 21 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 C 0.19 2.92 2.83 -67.93 -0.19 2.73 16 25 H 0.08 1.16 6.94 -51.93 -0.36 0.80 16 26 C -0.15 -2.44 8.03 37.16 0.30 -2.14 16 27 C -0.15 -2.11 5.18 -90.61 -0.47 -2.58 16 28 C -0.19 -2.27 10.17 -26.75 -0.27 -2.54 16 29 C -0.17 -1.98 9.73 -26.75 -0.26 -2.24 16 30 H 0.11 1.48 6.60 -51.93 -0.34 1.14 16 31 H 0.09 0.91 8.05 -51.92 -0.42 0.49 16 32 H 0.13 2.05 4.06 -51.93 -0.21 1.84 16 33 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.16 1.24 7.61 -52.49 -0.40 0.84 16 35 H 0.17 2.32 6.89 -52.49 -0.36 1.95 16 36 H 0.04 0.87 6.39 -51.93 -0.33 0.54 16 37 H 0.06 1.19 4.23 -51.93 -0.22 0.97 16 38 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 39 H 0.06 1.01 7.91 -51.93 -0.41 0.60 16 40 H 0.05 0.67 7.29 -51.93 -0.38 0.29 16 41 H 0.09 1.61 6.63 -51.93 -0.34 1.27 16 42 H 0.12 1.73 6.53 -51.93 -0.34 1.39 16 43 H 0.09 1.03 8.05 -51.93 -0.42 0.62 16 44 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.09 1.03 7.61 -51.93 -0.40 0.64 16 LS Contribution 385.04 15.07 5.80 5.80 Total: -1.00 -29.11 385.04 -11.18 -40.28 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -5.70 Total: 4.92 kcal Atomic # 6 Polarization: -25.31 SS G_CDS: -3.50 Total: -28.81 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.60 Total: -39.49 kcal Atomic # 8 Polarization: -42.48 SS G_CDS: -2.81 Total: -45.29 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 16 Polarization: 47.99 SS G_CDS: -0.54 Total: 47.45 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.11 -11.18 -40.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069599379.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.256 kcal (2) G-P(sol) polarization free energy of solvation -29.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds