Wall clock time and date at job start Tue Mar 31 2020 06:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38257 * 120.00527 * 2 1 4 4 C 1.38205 * 120.00332 * 179.97438 * 3 2 1 5 5 N 1.48023 * 120.00413 * 179.97438 * 4 3 2 6 6 O 1.21809 * 119.99500 * 0.02562 * 5 4 3 7 7 O 1.21796 * 120.00456 * 180.02562 * 5 4 3 8 8 C 1.38260 * 120.00046 * 359.96187 * 4 3 2 9 9 C 1.38215 * 119.99821 * 359.78612 * 8 4 3 10 10 C 1.38217 * 119.99973 * 179.97438 * 2 1 3 11 11 S 1.76211 * 119.99752 * 0.02562 * 10 2 1 12 12 O 1.42102 * 106.40073 * 81.27374 * 11 10 2 13 13 O 1.42098 * 106.40136 * 308.35565 * 11 10 2 14 14 N 1.65592 * 107.21440 * 194.81332 * 11 10 2 15 15 C 1.46500 * 120.00326 * 269.05661 * 14 11 10 16 16 C 1.50697 * 109.47556 * 265.00816 * 15 14 11 17 17 H 1.08001 * 119.99896 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00224 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99763 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99857 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46910 * 90.00283 * 20 18 16 22 22 H 1.48499 * 109.46961 * 210.00010 * 20 18 16 23 23 H 1.48494 * 109.47489 * 330.00428 * 20 18 16 24 24 C 1.46504 * 120.00113 * 89.06359 * 14 11 10 25 25 H 1.08997 * 109.47093 * 354.31543 * 24 14 11 26 26 C 1.52991 * 109.47192 * 234.31409 * 24 14 11 27 27 C 1.53003 * 109.47172 * 114.31448 * 24 14 11 28 28 C 1.53000 * 117.49672 * 185.00342 * 27 24 14 29 29 C 1.53001 * 60.03042 * 252.49738 * 28 27 24 30 30 H 1.08998 * 109.47154 * 267.17913 * 1 2 3 31 31 H 1.08999 * 109.46752 * 27.17691 * 1 2 3 32 32 H 1.08998 * 109.47363 * 147.17910 * 1 2 3 33 33 H 1.08003 * 119.99744 * 359.97438 * 3 2 1 34 34 H 1.08003 * 120.00082 * 180.02562 * 8 4 3 35 35 H 1.08002 * 119.99965 * 180.24932 * 9 8 4 36 36 H 1.09005 * 109.46945 * 25.00789 * 15 14 11 37 37 H 1.08999 * 109.47143 * 145.00138 * 15 14 11 38 38 H 0.97000 * 119.99904 * 179.97438 * 19 18 16 39 39 H 1.09003 * 109.47675 * 295.93984 * 26 24 14 40 40 H 1.09000 * 109.47500 * 55.94157 * 26 24 14 41 41 H 1.09006 * 109.47340 * 175.94067 * 26 24 14 42 42 H 1.09005 * 115.54923 * 330.66937 * 27 24 14 43 43 H 1.08997 * 117.50140 * 359.97438 * 28 27 24 44 44 H 1.09008 * 117.49761 * 145.00152 * 28 27 24 45 45 H 1.08993 * 117.50237 * 107.50397 * 29 28 27 46 46 H 1.08998 * 117.50063 * 252.52547 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1972 0.0005 5 7 4.3207 2.4791 0.0000 6 8 3.7117 3.5340 -0.0005 7 8 5.5386 2.4790 0.0000 8 6 4.2717 -0.0002 0.0019 9 6 3.5806 -1.1971 0.0071 10 6 2.1981 -1.1970 0.0005 11 16 1.3169 -2.7230 0.0005 12 8 0.9377 -2.9673 -1.3470 13 8 0.3833 -2.6472 1.0691 14 7 2.3960 -3.9119 0.4056 15 6 3.1395 -4.6147 -0.6430 16 6 2.4196 -5.8891 -1.0013 17 1 1.5003 -6.1499 -0.4980 18 6 2.9345 -6.7224 -1.9717 19 7 4.0537 -6.4046 -2.5850 20 14 2.0424 -8.3025 -2.4153 21 1 1.0757 -8.0344 -3.5101 22 1 3.0284 -9.3185 -2.8634 23 1 1.3141 -8.8107 -1.2252 24 6 2.6070 -4.2613 1.8127 25 1 2.0492 -3.5715 2.4459 26 6 4.0976 -4.1657 2.1438 27 6 2.1198 -5.6900 2.0621 28 6 2.1459 -6.2039 3.5030 29 6 3.1615 -6.7285 2.4859 30 1 -0.3633 -0.0506 1.0264 31 1 -0.3633 0.9142 -0.4694 32 1 -0.3634 -0.8636 -0.5570 33 1 1.6584 2.1326 -0.0004 34 1 5.3517 -0.0002 0.0027 35 1 4.1205 -2.1324 0.0122 36 1 3.2128 -3.9784 -1.5250 37 1 4.1403 -4.8518 -0.2820 38 1 4.4161 -6.9909 -3.2674 39 1 4.6473 -4.9060 1.5625 40 1 4.4612 -3.1679 1.8982 41 1 4.2465 -4.3551 3.2069 42 1 1.3042 -6.0270 1.4222 43 1 2.5106 -5.5243 4.2732 44 1 1.3475 -6.8791 3.8111 45 1 4.1938 -6.3939 2.5870 46 1 3.0310 -7.7485 2.1246 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069601937.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:32 Heat of formation + Delta-G solvation = -15.429831 kcal Electronic energy + Delta-G solvation = -32689.032877 eV Core-core repulsion = 28289.579880 eV Total energy + Delta-G solvation = -4399.452997 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 368.128 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.43754 -39.85032 -38.42269 -36.89437 -36.81569 -35.60697 -35.02074 -33.62783 -32.65900 -32.23738 -29.68985 -27.73131 -27.10757 -26.94445 -24.50439 -23.23608 -22.51173 -22.16620 -21.92295 -19.56224 -19.25564 -18.88239 -18.71940 -17.78730 -17.66533 -17.17698 -16.55311 -15.98484 -15.85468 -15.26858 -14.99611 -14.62789 -14.30032 -14.23688 -14.10524 -13.85169 -13.69831 -13.13159 -12.76368 -12.72631 -12.52923 -12.12475 -12.01109 -11.89739 -11.79500 -11.75485 -11.61487 -11.54032 -11.51981 -11.36860 -11.28544 -11.09285 -10.95319 -10.88327 -10.79219 -10.57185 -10.21207 -10.14836 -9.89610 -9.65031 -9.47201 -9.43864 -8.52094 -8.35441 -6.15500 -4.17671 -0.62298 0.56809 0.59766 0.92820 1.09299 2.75669 3.14948 3.26013 3.32917 3.35315 3.81591 3.96481 4.10574 4.26924 4.36154 4.44031 4.51970 4.72738 4.85528 4.91774 5.04497 5.11258 5.19520 5.22531 5.24587 5.26003 5.35939 5.39784 5.45616 5.50126 5.58775 5.67374 5.71361 5.81661 5.92417 5.95781 6.11084 6.17701 6.21252 6.42158 6.51933 6.54414 6.75206 7.05409 7.18124 7.38484 7.38574 7.81989 8.07974 8.82261 9.46886 10.93649 Molecular weight = 368.13amu Principal moments of inertia in cm(-1) A = 0.011574 B = 0.003349 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.653012 B = 8357.997297 C = 8691.024877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.015 3.985 3 C -0.079 4.079 4 C -0.001 4.001 5 N 0.024 4.976 6 O -0.156 6.156 7 O -0.151 6.151 8 C -0.080 4.080 9 C -0.021 4.021 10 C -0.629 4.629 11 S 2.677 3.323 12 O -0.926 6.926 13 O -0.959 6.959 14 N -0.973 5.973 15 C 0.250 3.750 16 C -0.519 4.519 17 H 0.063 0.937 18 C 0.065 3.935 19 N -0.895 5.895 20 Si 0.892 3.108 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.183 3.817 25 H 0.088 0.912 26 C -0.167 4.167 27 C -0.135 4.135 28 C -0.194 4.194 29 C -0.167 4.167 30 H 0.106 0.894 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.160 0.840 34 H 0.162 0.838 35 H 0.165 0.835 36 H 0.039 0.961 37 H 0.046 0.954 38 H 0.264 0.736 39 H 0.080 0.920 40 H 0.051 0.949 41 H 0.062 0.938 42 H 0.115 0.885 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.097 0.903 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.262 9.857 9.535 13.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.013 3.987 3 C -0.098 4.098 4 C -0.083 4.083 5 N 0.545 4.455 6 O -0.372 6.372 7 O -0.368 6.368 8 C -0.100 4.100 9 C -0.040 4.040 10 C -0.709 4.709 11 S 2.762 3.238 12 O -0.916 6.916 13 O -0.949 6.949 14 N -0.814 5.814 15 C 0.129 3.871 16 C -0.558 4.558 17 H 0.081 0.919 18 C -0.137 4.137 19 N -0.534 5.534 20 Si 0.720 3.280 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.198 1.198 24 C 0.076 3.924 25 H 0.106 0.894 26 C -0.226 4.226 27 C -0.154 4.154 28 C -0.231 4.231 29 C -0.204 4.204 30 H 0.124 0.876 31 H 0.110 0.890 32 H 0.094 0.906 33 H 0.178 0.822 34 H 0.179 0.821 35 H 0.183 0.817 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.099 0.901 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.133 0.867 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.115 0.885 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.335 9.151 9.173 13.166 hybrid contribution 0.541 -0.115 -0.431 0.701 sum -1.794 9.036 8.743 12.700 Atomic orbital electron populations 1.21286 0.88637 1.04885 1.05341 1.19461 0.96853 0.90210 0.92206 1.20976 0.91100 1.00247 0.97507 1.21315 0.92643 0.83817 1.10527 1.43669 1.01327 1.02803 0.97677 1.94540 1.70043 1.19583 1.53053 1.94553 0.95337 1.94165 1.52790 1.21180 1.02399 0.89740 0.96631 1.21150 0.91949 0.98980 0.91897 1.32165 1.07114 1.22550 1.09118 1.02905 0.73879 0.72548 0.74430 1.93677 1.79774 1.83232 1.34914 1.93566 1.58034 1.86829 1.56486 1.57560 1.62001 1.48269 1.13580 1.19252 0.92417 0.92249 0.83230 1.21374 1.09091 1.04940 1.20419 0.91865 1.24866 0.94946 0.98207 0.95706 1.69893 1.19807 1.37997 1.25737 0.86585 0.79519 0.82913 0.78985 1.20513 1.21231 1.19798 1.20218 0.96009 0.95299 0.80852 0.89440 1.22336 0.96384 1.02304 1.01575 1.22562 1.02571 0.94223 0.96089 1.23005 1.02990 1.04335 0.92804 1.22982 0.95761 0.99325 1.02295 0.87583 0.88956 0.90598 0.82209 0.82083 0.81715 0.94326 0.93633 0.92673 0.90084 0.92983 0.91890 0.86687 0.89439 0.89419 0.88488 0.89224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.74 36.00 0.31 -1.27 16 2 C 0.01 0.19 5.88 -104.62 -0.61 -0.43 16 3 C -0.08 -0.91 9.20 -39.59 -0.36 -1.28 16 4 C 0.00 -0.01 6.85 -79.95 -0.55 -0.56 16 5 N 0.02 0.32 4.45 33.96 0.15 0.48 16 6 O -0.16 -2.13 18.45 -29.46 -0.54 -2.68 16 7 O -0.15 -2.10 18.45 -29.46 -0.54 -2.65 16 8 C -0.08 -0.95 9.56 -39.58 -0.38 -1.33 16 9 C -0.02 -0.27 9.53 -39.58 -0.38 -0.64 16 10 C -0.63 -9.06 5.83 -39.58 -0.23 -9.29 16 11 S 2.68 46.85 4.24 -107.50 -0.46 46.39 16 12 O -0.93 -19.85 16.75 -57.17 -0.96 -20.81 16 13 O -0.96 -16.91 15.44 -57.17 -0.88 -17.80 16 14 N -0.97 -17.15 1.83 -108.57 -0.20 -17.35 16 15 C 0.25 5.36 4.33 -5.20 -0.02 5.33 16 16 C -0.52 -12.87 8.37 -34.44 -0.29 -13.16 16 17 H 0.06 1.57 6.22 -52.49 -0.33 1.24 16 18 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.90 -24.18 13.29 55.43 0.74 -23.45 16 20 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 C 0.18 2.75 2.95 -67.93 -0.20 2.55 16 25 H 0.09 1.21 7.05 -51.93 -0.37 0.85 16 26 C -0.17 -2.10 7.49 37.15 0.28 -1.83 16 27 C -0.13 -2.15 4.81 -90.58 -0.44 -2.59 16 28 C -0.19 -2.51 9.99 -26.73 -0.27 -2.78 16 29 C -0.17 -2.44 9.50 -26.69 -0.25 -2.69 16 30 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.09 0.71 8.07 -51.93 -0.42 0.29 16 32 H 0.08 0.94 6.58 -51.93 -0.34 0.60 16 33 H 0.16 1.45 7.61 -52.48 -0.40 1.05 16 34 H 0.16 1.58 7.61 -52.48 -0.40 1.18 16 35 H 0.17 1.97 6.04 -52.49 -0.32 1.66 16 36 H 0.04 0.90 7.58 -51.93 -0.39 0.51 16 37 H 0.05 0.97 6.29 -51.93 -0.33 0.64 16 38 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 39 H 0.08 1.14 5.58 -51.93 -0.29 0.85 16 40 H 0.05 0.57 7.28 -51.93 -0.38 0.19 16 41 H 0.06 0.66 7.51 -51.93 -0.39 0.27 16 42 H 0.12 2.13 6.55 -51.93 -0.34 1.79 16 43 H 0.09 0.98 7.97 -51.93 -0.41 0.57 16 44 H 0.09 1.08 8.14 -51.92 -0.42 0.65 16 45 H 0.10 1.31 5.81 -51.93 -0.30 1.01 16 46 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 388.73 15.07 5.86 5.86 Total: -1.00 -30.27 388.73 -11.15 -41.41 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -5.81 Total: 3.45 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: -3.48 Total: -28.35 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: 0.69 Total: -40.32 kcal Atomic # 8 Polarization: -41.00 SS G_CDS: -2.93 Total: -43.93 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: 46.85 SS G_CDS: -0.46 Total: 46.39 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.27 -11.15 -41.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069601937.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.984 kcal (2) G-P(sol) polarization free energy of solvation -30.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds