Wall clock time and date at job start Tue Mar 31 2020 06:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99635 * 2 1 4 4 H 1.48498 * 109.47221 * 269.99687 * 3 2 1 5 5 H 1.48498 * 109.47233 * 30.00342 * 3 2 1 6 6 H 1.48499 * 109.46965 * 149.99908 * 3 2 1 7 7 C 1.37874 * 119.99846 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99388 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00516 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.47439 * 180.02562 * 9 7 2 11 11 O 1.45199 * 109.47232 * 179.97438 * 10 9 7 12 12 C 1.34220 * 116.99706 * 180.02562 * 11 10 9 13 13 O 1.20825 * 120.00330 * 0.02562 * 12 11 10 14 14 C 1.50707 * 119.99921 * 180.02562 * 12 11 10 15 15 H 1.09000 * 109.52036 * 300.08050 * 14 12 11 16 16 C 1.53045 * 109.49414 * 60.16255 * 14 12 11 17 17 C 1.53045 * 109.53423 * 181.31913 * 16 14 12 18 18 C 1.53626 * 109.24122 * 298.50866 * 17 16 14 19 19 N 1.46925 * 108.54250 * 54.85903 * 18 17 16 20 20 S 1.65597 * 120.63359 * 126.37111 * 19 18 17 21 21 O 1.42098 * 106.40763 * 156.17644 * 20 19 18 22 22 O 1.42105 * 106.39856 * 23.25582 * 20 19 18 23 23 C 1.76198 * 107.21752 * 269.72113 * 20 19 18 24 24 C 1.38678 * 120.41825 * 270.02164 * 23 20 19 25 25 C 1.38627 * 118.42399 * 179.97438 * 24 23 20 26 26 C 1.38220 * 119.16050 * 0.02562 * 25 24 23 27 27 N 1.31860 * 120.76284 * 359.97438 * 26 25 24 28 28 C 1.31884 * 121.72590 * 0.02562 * 27 26 25 29 29 C 1.46935 * 118.73715 * 306.09151 * 19 18 17 30 30 H 0.96993 * 120.00590 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.47174 * 60.00135 * 9 7 2 32 32 H 1.09005 * 109.47199 * 300.00116 * 9 7 2 33 33 H 1.09001 * 109.46914 * 59.99870 * 10 9 7 34 34 H 1.08996 * 109.46825 * 300.00170 * 10 9 7 35 35 H 1.08994 * 109.45741 * 301.33442 * 16 14 12 36 36 H 1.08997 * 109.46278 * 61.31103 * 16 14 12 37 37 H 1.09003 * 109.49855 * 58.58453 * 17 16 14 38 38 H 1.08993 * 109.49849 * 178.64830 * 17 16 14 39 39 H 1.09004 * 109.74043 * 295.12019 * 18 17 16 40 40 H 1.08993 * 109.66420 * 174.55171 * 18 17 16 41 41 H 1.08007 * 120.78855 * 359.94788 * 24 23 20 42 42 H 1.08000 * 120.41839 * 180.02562 * 25 24 23 43 43 H 1.07999 * 119.62072 * 180.02562 * 26 25 24 44 44 H 1.08003 * 119.61187 * 180.02562 * 28 27 26 45 45 H 1.09000 * 109.58142 * 173.65284 * 29 19 18 46 46 H 1.08993 * 109.58459 * 294.07592 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 8 1.5195 -4.9196 0.0001 12 6 2.2506 -6.0452 0.0007 13 8 3.4572 -5.9819 0.0012 14 6 1.5665 -7.3880 0.0008 15 1 0.9419 -7.4786 0.8895 16 6 0.6956 -7.5176 -1.2510 17 6 -0.0252 -8.8676 -1.2355 18 6 1.0156 -9.9975 -1.2520 19 7 1.9422 -9.7956 -0.1297 20 16 2.2214 -11.0085 0.9626 21 8 3.4944 -10.7462 1.5369 22 8 1.9028 -12.2252 0.3013 23 6 1.0429 -10.8238 2.2595 24 6 1.3346 -10.0422 3.3672 25 6 0.3771 -9.9252 4.3628 26 6 -0.8278 -10.5872 4.2196 27 7 -1.0708 -11.3221 3.1521 28 6 -0.1835 -11.4560 2.1856 29 6 2.6211 -8.4991 0.0015 30 1 -0.4851 0.8399 -0.0004 31 1 0.6242 -2.5567 -0.8903 32 1 0.6248 -2.5571 0.8897 33 1 2.8721 -3.6043 0.8895 34 1 2.8721 -3.6043 -0.8905 35 1 -0.0400 -6.7135 -1.2664 36 1 1.3241 -7.4519 -2.1391 37 1 -0.6348 -8.9443 -0.3351 38 1 -0.6637 -8.9493 -2.1151 39 1 1.5687 -9.9749 -2.1910 40 1 0.5146 -10.9593 -1.1437 41 1 2.2854 -9.5369 3.4525 42 1 0.5701 -9.3243 5.2392 43 1 -1.5792 -10.5008 4.9905 44 1 -0.4186 -12.0662 1.3261 45 1 3.1797 -8.4722 0.9371 46 1 3.3023 -8.3569 -0.8374 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069633098.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:56 Heat of formation + Delta-G solvation = -131.897399 kcal Electronic energy + Delta-G solvation = -31342.725557 eV Core-core repulsion = 26938.222147 eV Total energy + Delta-G solvation = -4404.503410 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 368.128 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.58417 -40.45856 -38.49402 -37.73501 -36.28084 -36.19216 -33.47379 -33.17814 -33.01796 -32.00154 -31.70391 -30.26375 -25.67691 -25.04737 -24.51677 -24.30932 -24.16008 -21.75054 -20.98312 -20.20029 -19.40463 -18.69206 -18.03284 -17.36921 -17.13459 -17.07090 -16.32786 -16.07149 -16.02248 -15.87134 -14.94338 -14.91932 -14.85028 -14.56921 -14.50304 -14.15349 -14.09092 -13.75446 -13.46267 -13.15812 -13.05978 -12.91505 -12.49762 -12.42287 -12.38610 -12.34372 -11.85579 -11.75735 -11.42994 -11.32821 -11.26119 -11.09772 -10.96926 -10.81342 -10.73056 -10.69541 -10.23638 -10.11232 -9.99251 -9.72740 -9.70280 -9.45782 -9.34495 -8.49642 -6.15726 -4.20311 -0.19143 0.15534 0.64491 2.36121 2.41790 3.01823 3.10316 3.24851 3.31256 3.31902 3.35513 3.73735 3.85148 4.14153 4.24655 4.29644 4.34145 4.43922 4.47677 4.53278 4.63578 4.74992 4.79783 4.91566 5.06552 5.08514 5.21051 5.21681 5.25076 5.32840 5.44095 5.45507 5.51498 5.60371 5.73398 5.86991 5.96782 5.98154 6.00454 6.01729 6.07349 6.56429 6.89315 7.24499 7.48906 7.55221 7.80432 8.08166 8.18813 8.85270 9.44526 10.95738 Molecular weight = 368.13amu Principal moments of inertia in cm(-1) A = 0.014034 B = 0.002156 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.736182 B =12983.370898 C =13672.037139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.075 3.925 11 O -0.354 6.354 12 C 0.461 3.539 13 O -0.514 6.514 14 C -0.098 4.098 15 H 0.108 0.892 16 C -0.111 4.111 17 C -0.133 4.133 18 C 0.115 3.885 19 N -0.994 5.994 20 S 2.697 3.303 21 O -0.947 6.947 22 O -0.949 6.949 23 C -0.737 4.737 24 C 0.025 3.975 25 C -0.190 4.190 26 C 0.152 3.848 27 N -0.495 5.495 28 C 0.200 3.800 29 C 0.136 3.864 30 H 0.264 0.736 31 H 0.028 0.972 32 H 0.027 0.973 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.153 0.847 42 H 0.148 0.852 43 H 0.166 0.834 44 H 0.172 0.828 45 H 0.100 0.900 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.195 -25.108 3.237 25.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.002 3.998 11 O -0.270 6.270 12 C 0.303 3.697 13 O -0.404 6.404 14 C -0.119 4.119 15 H 0.126 0.874 16 C -0.149 4.149 17 C -0.172 4.172 18 C -0.010 4.010 19 N -0.832 5.832 20 S 2.786 3.214 21 O -0.937 6.937 22 O -0.939 6.939 23 C -0.825 4.825 24 C -0.001 4.001 25 C -0.211 4.211 26 C -0.004 4.004 27 N -0.205 5.205 28 C 0.041 3.959 29 C 0.011 3.989 30 H 0.073 0.927 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.100 0.900 40 H 0.112 0.888 41 H 0.170 0.830 42 H 0.166 0.834 43 H 0.183 0.817 44 H 0.189 0.811 45 H 0.118 0.882 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.173 -25.987 3.134 26.266 hybrid contribution 0.691 1.933 0.640 2.150 sum -1.483 -24.055 3.774 24.394 Atomic orbital electron populations 1.69966 1.06104 1.27051 1.49729 1.24980 0.94915 0.99410 0.94808 0.86470 0.79773 0.82783 0.78286 1.20444 1.21035 1.19705 1.20973 0.93187 0.90103 1.52281 0.92250 1.19163 0.94153 0.89033 0.98822 1.23676 0.96398 0.78681 1.01027 1.86516 1.42388 1.15771 1.82300 1.23242 0.86395 0.87135 0.72893 1.90656 1.15640 1.88315 1.45752 1.21380 0.98448 0.89395 1.02643 0.87352 1.21489 0.99070 0.98424 0.95907 1.22019 0.97634 0.94087 1.03455 1.21707 0.90629 0.99395 0.89268 1.57759 1.57481 1.28316 1.39625 1.02034 0.73734 0.72931 0.72715 1.93612 1.36996 1.84890 1.78202 1.93593 1.85126 1.41587 1.73629 1.32123 1.17225 1.13502 1.19609 1.21427 0.98851 0.89812 0.90038 1.22338 0.95291 1.02396 1.01061 1.23232 0.95102 0.88097 0.93941 1.67876 1.33246 1.17320 1.02013 1.22600 0.86487 0.90760 0.96078 1.21320 0.92747 0.79511 1.05312 0.92674 0.95370 0.95430 0.92262 0.92215 0.89455 0.90741 0.91138 0.89652 0.89954 0.88752 0.82963 0.83388 0.81696 0.81142 0.88169 0.88940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.53 -14.50 9.11 -34.44 -0.31 -14.81 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 9 C 0.03 0.64 5.35 -27.88 -0.15 0.49 16 10 C 0.07 1.59 5.40 37.16 0.20 1.79 16 11 O -0.35 -6.53 10.11 -39.23 -0.40 -6.93 16 12 C 0.46 7.20 7.26 36.01 0.26 7.47 16 13 O -0.51 -9.26 15.67 -18.75 -0.29 -9.56 16 14 C -0.10 -1.05 2.78 -91.65 -0.25 -1.30 16 15 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 16 C -0.11 -1.01 5.10 -26.68 -0.14 -1.14 16 17 C -0.13 -0.86 6.10 -26.38 -0.16 -1.02 16 18 C 0.11 0.74 6.41 -3.49 -0.02 0.72 16 19 N -0.99 -8.25 3.28 -113.27 -0.37 -8.63 16 20 S 2.70 25.51 5.70 -107.50 -0.61 24.90 16 21 O -0.95 -11.52 16.08 -57.17 -0.92 -12.44 16 22 O -0.95 -10.41 16.02 -57.17 -0.92 -11.33 16 23 C -0.74 -6.32 5.99 -39.44 -0.24 -6.55 16 24 C 0.03 0.20 9.65 -39.28 -0.38 -0.18 16 25 C -0.19 -1.28 10.11 -39.44 -0.40 -1.68 16 26 C 0.15 1.09 11.18 -17.55 -0.20 0.89 16 27 N -0.50 -4.54 10.36 -13.25 -0.14 -4.67 16 28 C 0.20 1.71 10.69 -17.55 -0.19 1.52 16 29 C 0.14 1.35 5.01 -3.71 -0.02 1.33 16 30 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 1.25 8.13 -51.93 -0.42 0.83 16 34 H 0.06 1.26 8.13 -51.93 -0.42 0.84 16 35 H 0.09 0.88 8.09 -51.93 -0.42 0.46 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.09 0.49 7.12 -51.93 -0.37 0.12 16 41 H 0.15 1.04 7.71 -52.48 -0.40 0.63 16 42 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 43 H 0.17 0.68 8.06 -52.49 -0.42 0.26 16 44 H 0.17 1.14 7.63 -52.48 -0.40 0.73 16 45 H 0.10 1.01 7.13 -51.93 -0.37 0.64 16 46 H 0.09 0.94 7.96 -51.93 -0.41 0.53 16 LS Contribution 398.01 15.07 6.00 6.00 Total: -1.00 -35.25 398.01 -10.59 -45.84 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -6.57 Total: -3.21 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -2.09 Total: -10.86 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.23 Total: -38.43 kcal Atomic # 8 Polarization: -37.72 SS G_CDS: -2.53 Total: -40.25 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 25.51 SS G_CDS: -0.61 Total: 24.90 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.25 -10.59 -45.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069633098.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.055 kcal (2) G-P(sol) polarization free energy of solvation -35.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds