Wall clock time and date at job start Tue Mar 31 2020 05:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46892 * 111.00086 * 2 1 4 4 C 1.53006 * 109.47131 * 293.95361 * 3 2 1 5 5 C 1.50697 * 109.47245 * 179.97438 * 4 3 2 6 6 C 1.38239 * 119.98944 * 270.25392 * 5 4 3 7 7 C 1.38221 * 120.00936 * 180.30134 * 6 5 4 8 8 C 1.38333 * 119.98831 * 359.46424 * 7 6 5 9 9 Br 1.89102 * 120.00969 * 180.27905 * 8 7 6 10 10 C 1.38325 * 119.97835 * 0.25766 * 8 7 6 11 11 C 1.38216 * 119.99239 * 0.02562 * 10 8 7 12 12 C 1.46900 * 111.00005 * 123.95404 * 2 1 3 13 13 C 1.50700 * 109.47396 * 66.04735 * 12 2 1 14 14 O 1.21282 * 119.99840 * 359.97438 * 13 12 2 15 15 N 1.34774 * 120.00098 * 180.02562 * 13 12 2 16 16 C 1.46500 * 120.00224 * 359.97438 * 15 13 12 17 17 C 1.46499 * 120.00280 * 179.97438 * 15 13 12 18 18 C 1.50708 * 109.47194 * 89.99307 * 17 15 13 19 19 H 1.07998 * 119.99819 * 0.02562 * 18 17 15 20 20 C 1.37879 * 120.00041 * 180.02562 * 18 17 15 21 21 N 1.31510 * 119.99859 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99931 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47329 * 59.99830 * 22 20 18 24 24 H 1.48503 * 109.47141 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47318 * 299.99762 * 22 20 18 26 26 H 1.08994 * 109.47162 * 60.00679 * 1 2 3 27 27 H 1.09001 * 109.47212 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47473 * 299.99610 * 1 2 3 29 29 H 1.08998 * 109.47372 * 173.95540 * 3 2 1 30 30 H 1.09000 * 109.47431 * 53.95006 * 3 2 1 31 31 H 1.08998 * 109.46846 * 59.99857 * 4 3 2 32 32 H 1.09000 * 109.46673 * 300.00109 * 4 3 2 33 33 H 1.07995 * 120.00092 * 0.02562 * 6 5 4 34 34 H 1.08002 * 120.00923 * 179.75014 * 7 6 5 35 35 H 1.07991 * 120.00253 * 180.02562 * 10 8 7 36 36 H 1.07992 * 120.00060 * 179.97438 * 11 10 8 37 37 H 1.08996 * 109.47263 * 186.04863 * 12 2 1 38 38 H 1.09002 * 109.47388 * 306.04537 * 12 2 1 39 39 H 1.09001 * 109.47128 * 90.00436 * 16 15 13 40 40 H 1.08996 * 109.47591 * 210.00443 * 16 15 13 41 41 H 1.08998 * 109.47201 * 330.00443 * 16 15 13 42 42 H 1.08998 * 109.47518 * 209.99711 * 17 15 13 43 43 H 1.08999 * 109.46993 * 330.00049 * 17 15 13 44 44 H 0.97002 * 119.99727 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.6314 2.0574 -1.3183 5 6 2.1709 3.4645 -1.3181 6 6 1.3986 4.5006 -0.8272 7 6 1.8906 5.7922 -0.8325 8 6 3.1604 6.0464 -1.3190 9 35 3.8372 7.8122 -1.3192 10 6 3.9351 5.0085 -1.8047 11 6 3.4400 3.7180 -1.8044 12 6 1.9954 -0.7660 1.1376 13 6 1.6370 -2.2204 0.9729 14 8 1.0047 -2.5831 0.0035 15 7 2.0181 -3.1179 1.9033 16 6 2.7813 -2.6798 3.0745 17 6 1.6691 -4.5318 1.7435 18 6 2.7617 -5.2357 0.9806 19 1 3.6293 -4.6851 0.6484 20 6 2.6535 -6.5827 0.7067 21 7 1.5972 -7.2533 1.1117 22 14 4.0080 -7.4554 -0.2382 23 1 5.2855 -7.3430 0.5105 24 1 3.6543 -8.8885 -0.4003 25 1 4.1614 -6.8286 -1.5757 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 3.0797 1.3443 0.1082 30 1 1.5611 1.9273 0.8309 31 1 0.5472 2.0844 -1.4265 32 1 2.0658 1.5014 -2.1492 33 1 0.4089 4.3015 -0.4436 34 1 1.2856 6.6023 -0.4527 35 1 4.9266 5.2064 -2.1842 36 1 4.0445 2.9077 -2.1840 37 1 3.0797 -0.6611 1.1757 38 1 1.5611 -0.3873 2.0628 39 1 2.0938 -2.4126 3.8771 40 1 3.4319 -3.4883 3.4076 41 1 3.3860 -1.8123 2.8104 42 1 1.5572 -4.9917 2.7254 43 1 0.7312 -4.6147 1.1944 44 1 1.5212 -8.2010 0.9194 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069656240.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:21 Heat of formation + Delta-G solvation = 0.712481 kcal Electronic energy + Delta-G solvation = -24108.399217 eV Core-core repulsion = 20493.174811 eV Total energy + Delta-G solvation = -3615.224406 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 368.084 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.88551 -39.19511 -37.02395 -34.75432 -33.76500 -32.59617 -31.44077 -31.18456 -29.03088 -27.98811 -27.27616 -25.76574 -24.89139 -23.20866 -22.79115 -21.64598 -20.75494 -18.39151 -17.05577 -16.58912 -16.44487 -16.07157 -15.73982 -15.46537 -15.24429 -14.76068 -14.42549 -14.33970 -13.90653 -13.80408 -13.43965 -13.24416 -13.11054 -12.57981 -12.35165 -12.23754 -12.16927 -11.86372 -11.72023 -11.51594 -11.42573 -11.23874 -11.14695 -11.04491 -10.87300 -10.85729 -10.66226 -10.54527 -10.13769 -9.61446 -9.41047 -8.99392 -8.81527 -8.41751 -8.18033 -7.60810 -6.02690 -4.07253 0.69510 0.92703 1.25532 3.20031 3.33175 3.37538 3.39182 3.46959 3.65710 4.21147 4.36346 4.47068 4.52124 4.62267 4.80466 4.95122 5.00168 5.07419 5.14874 5.25307 5.31618 5.39626 5.41525 5.44091 5.51598 5.62119 5.67070 5.71684 5.74927 5.81947 5.86837 5.90068 5.92649 6.19513 6.24604 6.32084 6.44749 6.91110 7.10930 7.15448 7.45443 7.56498 7.93910 8.25173 8.44141 8.92536 9.14497 9.57781 11.05294 Molecular weight = 368.08amu Principal moments of inertia in cm(-1) A = 0.022264 B = 0.001509 C = 0.001476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.317048 B =18551.753940 C =18971.888014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.523 5.523 3 C 0.063 3.937 4 C -0.082 4.082 5 C -0.059 4.059 6 C -0.112 4.112 7 C -0.090 4.090 8 C -0.097 4.097 9 Br -0.058 7.058 10 C -0.089 4.089 11 C -0.109 4.109 12 C 0.038 3.962 13 C 0.505 3.495 14 O -0.523 6.523 15 N -0.605 5.605 16 C 0.084 3.916 17 C 0.247 3.753 18 C -0.525 4.525 19 H 0.057 0.943 20 C 0.060 3.940 21 N -0.896 5.896 22 Si 0.898 3.102 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.276 1.276 26 H 0.066 0.934 27 H 0.093 0.907 28 H 0.016 0.984 29 H 0.075 0.925 30 H 0.033 0.967 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.097 0.903 38 H 0.055 0.945 39 H 0.043 0.957 40 H 0.074 0.926 41 H 0.055 0.945 42 H 0.031 0.969 43 H 0.043 0.957 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.772 31.706 -1.274 31.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.247 5.247 3 C -0.065 4.065 4 C -0.120 4.120 5 C -0.060 4.060 6 C -0.131 4.131 7 C -0.109 4.109 8 C -0.176 4.176 9 Br 0.027 6.973 10 C -0.108 4.108 11 C -0.128 4.128 12 C -0.093 4.093 13 C 0.291 3.709 14 O -0.400 6.400 15 N -0.339 5.339 16 C -0.060 4.060 17 C 0.128 3.872 18 C -0.564 4.564 19 H 0.075 0.925 20 C -0.142 4.142 21 N -0.535 5.535 22 Si 0.726 3.274 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.201 1.201 26 H 0.085 0.915 27 H 0.111 0.889 28 H 0.035 0.965 29 H 0.094 0.906 30 H 0.052 0.948 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.115 0.885 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.093 0.907 41 H 0.073 0.927 42 H 0.049 0.951 43 H 0.061 0.939 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.755 31.727 -2.206 31.922 hybrid contribution 0.473 -0.475 0.371 0.766 sum 3.228 31.251 -1.835 31.471 Atomic orbital electron populations 1.22604 0.86595 1.04375 0.99450 1.61573 1.08861 1.11858 1.42389 1.22082 1.00357 0.88221 0.95844 1.20681 1.01695 0.90477 0.99144 1.20100 0.94023 0.95822 0.96006 1.21109 1.00350 0.91720 0.99871 1.21103 0.93851 0.97589 0.98393 1.21781 0.97456 0.91190 1.07220 1.96720 1.86830 1.15670 1.98037 1.21129 0.99632 0.91847 0.98238 1.21168 0.95500 0.96376 0.99735 1.22043 1.01335 0.93413 0.92477 1.20124 0.80758 0.86832 0.83218 1.90635 1.39818 1.80179 1.29324 1.48172 1.53908 1.10441 1.21368 1.21622 0.95676 1.00334 0.88405 1.19265 0.97277 0.73480 0.97222 1.21399 1.05360 0.93835 1.35824 0.92523 1.24938 0.96007 0.97364 0.95848 1.69922 1.28088 1.08988 1.46462 0.86554 0.81872 0.78365 0.80598 1.20297 1.21212 1.20139 0.91526 0.88886 0.96522 0.90643 0.94840 0.90362 0.89386 0.85132 0.85117 0.85023 0.84765 0.88539 0.92738 0.93882 0.90722 0.92658 0.95094 0.93873 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 8.96 60.06 0.54 0.78 16 2 N -0.52 -7.39 4.50 -244.38 -1.10 -8.49 16 3 C 0.06 0.66 4.94 -3.83 -0.02 0.64 16 4 C -0.08 -0.75 5.27 -27.88 -0.15 -0.90 16 5 C -0.06 -0.49 5.13 -104.62 -0.54 -1.03 16 6 C -0.11 -0.87 9.70 -39.59 -0.38 -1.25 16 7 C -0.09 -0.70 9.79 -39.55 -0.39 -1.09 16 8 C -0.10 -0.81 6.22 -39.51 -0.25 -1.06 16 9 Br -0.06 -0.45 33.70 -68.01 -2.29 -2.74 16 10 C -0.09 -0.71 9.79 -39.56 -0.39 -1.10 16 11 C -0.11 -0.89 9.70 -39.59 -0.38 -1.27 16 12 C 0.04 0.57 4.00 -4.98 -0.02 0.55 16 13 C 0.51 10.36 7.37 -10.99 -0.08 10.27 16 14 O -0.52 -12.97 13.91 5.56 0.08 -12.89 16 15 N -0.61 -12.72 2.86 -182.95 -0.52 -13.24 16 16 C 0.08 1.30 10.24 59.85 0.61 1.91 16 17 C 0.25 6.45 5.16 -5.19 -0.03 6.42 16 18 C -0.53 -14.95 9.39 -34.44 -0.32 -15.27 16 19 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 20 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 21 N -0.90 -26.66 13.29 55.43 0.74 -25.93 16 22 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 H 0.07 0.79 6.47 -51.93 -0.34 0.46 16 27 H 0.09 1.60 5.82 -51.93 -0.30 1.30 16 28 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 29 H 0.08 0.75 7.93 -51.93 -0.41 0.34 16 30 H 0.03 0.33 8.12 -51.93 -0.42 -0.10 16 31 H 0.08 0.69 6.50 -51.93 -0.34 0.35 16 32 H 0.09 0.87 8.09 -51.93 -0.42 0.45 16 33 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 35 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 36 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.10 1.27 7.19 -51.93 -0.37 0.89 16 38 H 0.05 0.69 8.09 -51.93 -0.42 0.27 16 39 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 41 H 0.05 0.69 6.44 -51.93 -0.33 0.35 16 42 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 43 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 383.08 15.07 5.77 5.77 Total: -1.00 -33.12 383.08 -10.90 -44.02 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -6.66 Total: -2.67 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -1.89 Total: -0.77 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: -0.89 Total: -47.66 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.08 Total: -12.89 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 35 Polarization: -0.45 SS G_CDS: -2.29 Total: -2.74 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.12 -10.90 -44.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069656240.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.729 kcal (2) G-P(sol) polarization free energy of solvation -33.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds