Wall clock time and date at job start Tue Mar 31 2020 05:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.62009 * 2 1 4 4 C 1.53241 * 109.78756 * 239.51824 * 2 1 3 5 5 N 1.46896 * 109.33770 * 186.36568 * 4 2 1 6 6 C 1.46905 * 111.00133 * 187.25077 * 5 4 2 7 7 C 1.50704 * 109.46795 * 301.74284 * 6 5 4 8 8 C 1.38237 * 120.00042 * 90.00029 * 7 6 5 9 9 C 1.38231 * 120.00075 * 179.72668 * 8 7 6 10 10 C 1.38237 * 119.99996 * 0.25004 * 9 8 7 11 11 C 1.38233 * 119.99677 * 0.02562 * 10 9 8 12 12 C 1.38228 * 120.00523 * 0.02562 * 11 10 9 13 13 C 1.46898 * 111.27240 * 63.10034 * 5 4 2 14 14 C 1.53241 * 109.34172 * 296.89781 * 13 5 4 15 15 N 1.47077 * 108.52351 * 53.82560 * 14 13 5 16 16 S 1.65599 * 120.88024 * 128.83833 * 15 14 13 17 17 O 1.42105 * 106.39994 * 210.43263 * 16 15 14 18 18 O 1.42095 * 106.40217 * 343.34899 * 16 15 14 19 19 N 1.65594 * 107.21868 * 96.89101 * 16 15 14 20 20 C 1.46499 * 120.00247 * 106.02082 * 19 16 15 21 21 C 1.46500 * 119.99896 * 286.02760 * 19 16 15 22 22 C 1.50699 * 109.47385 * 94.99929 * 21 19 16 23 23 H 1.07997 * 119.99984 * 359.97438 * 22 21 19 24 24 C 1.37877 * 119.99800 * 180.02562 * 22 21 19 25 25 N 1.31516 * 119.99814 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00044 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46720 * 359.97438 * 26 24 22 28 28 H 1.48490 * 109.47266 * 119.99527 * 26 24 22 29 29 H 1.48504 * 109.46932 * 239.99748 * 26 24 22 30 30 H 1.09000 * 109.47115 * 292.37240 * 1 2 3 31 31 H 1.09002 * 109.47586 * 52.37617 * 1 2 3 32 32 H 1.09000 * 109.47567 * 172.37688 * 1 2 3 33 33 H 1.08997 * 109.49586 * 66.40073 * 4 2 1 34 34 H 1.09000 * 109.49017 * 306.31975 * 4 2 1 35 35 H 1.08998 * 109.47339 * 181.74051 * 6 5 4 36 36 H 1.08996 * 109.46770 * 61.73792 * 6 5 4 37 37 H 1.08007 * 119.99860 * 359.97438 * 8 7 6 38 38 H 1.08000 * 120.00417 * 180.27884 * 9 8 7 39 39 H 1.07997 * 119.99941 * 180.02562 * 10 9 8 40 40 H 1.08004 * 119.99656 * 179.97438 * 11 10 9 41 41 H 1.07999 * 120.00662 * 179.97438 * 12 11 10 42 42 H 1.09002 * 109.49029 * 56.85651 * 13 5 4 43 43 H 1.09007 * 109.49423 * 176.93470 * 13 5 4 44 44 H 1.09000 * 109.62942 * 173.53822 * 14 13 5 45 45 H 1.09007 * 109.62667 * 293.92311 * 14 13 5 46 46 H 1.09003 * 109.46948 * 95.37031 * 20 19 16 47 47 H 1.08997 * 109.47294 * 215.37560 * 20 19 16 48 48 H 1.09003 * 109.47019 * 335.37646 * 20 19 16 49 49 H 1.09007 * 109.46525 * 214.99917 * 21 19 16 50 50 H 1.08999 * 109.46747 * 334.99148 * 21 19 16 51 51 H 0.97007 * 119.99426 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8960 1.0267 0.0000 4 6 2.0487 -0.7314 -1.2426 5 7 3.5096 -0.8595 -1.1572 6 6 4.0646 -1.4004 -2.4052 7 6 3.4428 -2.7432 -2.6909 8 6 2.2852 -2.8231 -3.4422 9 6 1.7180 -4.0551 -3.7090 10 6 2.3056 -5.2069 -3.2202 11 6 3.4600 -5.1266 -2.4641 12 6 4.0266 -3.8945 -2.1964 13 6 3.9062 -1.6804 -0.0054 14 6 3.4635 -0.9879 1.2879 15 7 2.0241 -0.7007 1.1950 16 16 0.9872 -1.1539 2.4041 17 8 -0.2651 -1.4107 1.7835 18 8 1.6793 -2.1178 3.1858 19 7 0.7642 0.1659 3.3790 20 6 -0.4980 0.9080 3.3299 21 6 1.8292 0.5916 4.2905 22 6 2.6541 1.6672 3.6319 23 1 2.4098 2.0000 2.6339 24 6 3.7213 2.2255 4.3029 25 7 4.0190 1.8197 5.5180 26 14 4.7443 3.5582 3.4863 27 1 4.2070 3.8329 2.1294 28 1 4.6856 4.7972 4.3026 29 1 6.1537 3.1034 3.3774 30 1 -0.3633 0.3912 0.9503 31 1 -0.3634 0.6274 -0.8139 32 1 -0.3634 -1.0186 -0.1363 33 1 1.7848 -0.1643 -2.1352 34 1 1.5992 -1.7230 -1.2951 35 1 5.1439 -1.5139 -2.3038 36 1 3.8466 -0.7171 -3.2260 37 1 1.8261 -1.9231 -3.8241 38 1 0.8161 -4.1179 -4.2998 39 1 1.8627 -6.1695 -3.4290 40 1 3.9189 -6.0265 -2.0819 41 1 4.9284 -3.8317 -1.6054 42 1 3.4308 -2.6588 -0.0752 43 1 4.9895 -1.8015 -0.0008 44 1 3.6519 -1.6441 2.1376 45 1 4.0180 -0.0578 1.4135 46 1 -1.1620 0.5478 4.1157 47 1 -0.3013 1.9697 3.4786 48 1 -0.9698 0.7584 2.3587 49 1 1.3878 0.9825 5.2074 50 1 2.4660 -0.2604 4.5283 51 1 4.7701 2.2123 5.9900 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069703261.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:04 Heat of formation + Delta-G solvation = -18.116416 kcal Electronic energy + Delta-G solvation = -33806.886812 eV Core-core repulsion = 29640.869072 eV Total energy + Delta-G solvation = -4166.017739 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.172 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.09275 -38.37107 -36.95394 -35.51827 -35.23944 -34.98232 -32.50304 -32.17115 -31.17863 -31.02887 -27.92444 -27.55483 -26.79132 -25.03145 -24.03196 -22.89108 -22.25553 -22.09276 -21.36502 -20.26741 -18.19327 -17.12036 -16.90278 -16.66994 -16.33077 -16.00231 -15.54378 -15.45123 -15.22622 -14.92668 -14.74951 -14.45310 -14.16956 -13.87256 -13.59176 -13.49329 -13.30624 -12.87439 -12.78653 -12.67020 -12.44230 -12.29093 -12.16368 -12.06332 -11.80712 -11.68790 -11.42819 -11.30152 -11.16542 -11.11417 -11.10270 -11.01732 -10.86455 -10.78982 -10.58248 -10.45933 -10.01524 -9.92879 -9.74412 -9.05898 -8.94391 -8.72813 -8.49998 -8.19393 -7.99302 -6.10513 -4.16803 1.16271 1.23723 1.30789 3.25314 3.34062 3.37101 3.46904 3.59085 4.01088 4.15158 4.37997 4.63517 4.64258 4.83229 4.87433 4.92725 4.95280 4.99558 5.22049 5.24105 5.31733 5.32549 5.39654 5.51656 5.52380 5.58445 5.63368 5.67875 5.77502 5.82239 5.84969 5.85927 5.94377 5.97870 6.08806 6.15350 6.27938 6.34338 6.37620 6.42887 6.47974 6.52562 6.59717 6.73136 6.83437 6.99626 7.07891 7.09170 7.34329 7.44770 7.63337 7.87121 8.15899 8.89397 9.49575 10.97312 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.011960 B = 0.003662 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.493978 B = 7645.100502 C = 8651.630930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.161 3.839 3 H 0.081 0.919 4 C 0.049 3.951 5 N -0.521 5.521 6 C 0.092 3.908 7 C -0.120 4.120 8 C -0.109 4.109 9 C -0.122 4.122 10 C -0.122 4.122 11 C -0.121 4.121 12 C -0.109 4.109 13 C 0.042 3.958 14 C 0.129 3.871 15 N -0.994 5.994 16 S 2.787 3.213 17 O -0.997 6.997 18 O -0.988 6.988 19 N -0.999 5.999 20 C 0.097 3.903 21 C 0.247 3.753 22 C -0.533 4.533 23 H 0.064 0.936 24 C 0.064 3.936 25 N -0.891 5.891 26 Si 0.893 3.107 27 H -0.271 1.271 28 H -0.285 1.285 29 H -0.283 1.283 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.044 0.956 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.040 0.960 43 H 0.083 0.917 44 H 0.095 0.905 45 H 0.084 0.916 46 H 0.043 0.957 47 H 0.071 0.929 48 H 0.067 0.933 49 H 0.036 0.964 50 H 0.043 0.957 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.700 -7.803 -17.368 19.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.054 3.946 3 H 0.099 0.901 4 C -0.080 4.080 5 N -0.243 5.243 6 C -0.036 4.036 7 C -0.122 4.122 8 C -0.127 4.127 9 C -0.140 4.140 10 C -0.141 4.141 11 C -0.139 4.139 12 C -0.127 4.127 13 C -0.088 4.088 14 C 0.003 3.997 15 N -0.833 5.833 16 S 2.798 3.202 17 O -0.982 6.982 18 O -0.972 6.972 19 N -0.840 5.840 20 C -0.050 4.050 21 C 0.125 3.875 22 C -0.572 4.572 23 H 0.082 0.918 24 C -0.139 4.139 25 N -0.530 5.530 26 Si 0.721 3.279 27 H -0.196 1.196 28 H -0.211 1.211 29 H -0.209 1.209 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.062 0.938 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.058 0.942 43 H 0.101 0.899 44 H 0.113 0.887 45 H 0.102 0.898 46 H 0.061 0.939 47 H 0.089 0.911 48 H 0.085 0.915 49 H 0.054 0.946 50 H 0.061 0.939 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.768 -8.130 -16.959 19.009 hybrid contribution 0.535 0.403 -0.446 0.805 sum -2.233 -7.727 -17.405 19.173 Atomic orbital electron populations 1.22764 0.93087 1.04669 1.03156 1.20952 0.93727 0.96368 0.83539 0.90135 1.22542 0.87419 0.99840 0.98206 1.62277 1.10931 1.49071 1.02049 1.21304 0.99269 0.90243 0.92773 1.20752 0.96535 0.96871 0.98050 1.21087 0.95575 0.97708 0.98357 1.21151 0.99919 0.92682 1.00232 1.21155 0.96144 0.98427 0.98325 1.21168 0.96341 0.97710 0.98708 1.21115 1.00089 0.92151 0.99394 1.22563 1.00530 0.94894 0.90801 1.21450 0.80216 1.01514 0.96553 1.58057 1.18806 1.73585 1.32877 1.01724 0.72537 0.73720 0.72267 1.93614 1.43269 1.85440 1.75835 1.93532 1.75406 1.58924 1.69327 1.57638 1.23181 1.48395 1.54824 1.21410 0.84803 0.98049 1.00693 1.19144 0.83665 0.96022 0.88641 1.21580 1.12788 1.20828 1.02051 0.91751 1.24954 0.97259 0.96927 0.94784 1.69957 1.28812 1.42581 1.11630 0.86520 0.80173 0.81606 0.79607 1.19577 1.21124 1.20905 0.90719 0.92081 0.89385 0.90251 0.93786 0.89754 0.89812 0.86157 0.86185 0.86279 0.86143 0.86083 0.94180 0.89878 0.88657 0.89759 0.93882 0.91055 0.91476 0.94573 0.93913 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.59 7.57 37.16 0.28 -2.31 16 2 C 0.16 2.45 3.66 -67.49 -0.25 2.20 16 3 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 4 C 0.05 0.64 3.94 -3.70 -0.01 0.63 16 5 N -0.52 -6.67 4.83 -235.76 -1.14 -7.81 16 6 C 0.09 0.94 5.55 -4.97 -0.03 0.91 16 7 C -0.12 -1.28 4.06 -104.62 -0.42 -1.70 16 8 C -0.11 -1.10 8.05 -39.58 -0.32 -1.42 16 9 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 10 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 11 C -0.12 -1.22 10.05 -39.59 -0.40 -1.62 16 12 C -0.11 -1.15 8.14 -39.58 -0.32 -1.47 16 13 C 0.04 0.58 4.91 -3.70 -0.02 0.56 16 14 C 0.13 2.21 6.68 -3.60 -0.02 2.19 16 15 N -0.99 -17.68 3.39 -106.20 -0.36 -18.03 16 16 S 2.79 56.51 5.59 -107.50 -0.60 55.91 16 17 O -1.00 -19.75 12.09 -57.17 -0.69 -20.44 16 18 O -0.99 -23.08 15.60 -57.17 -0.89 -23.97 16 19 N -1.00 -20.94 3.22 -123.05 -0.40 -21.33 16 20 C 0.10 1.70 10.24 59.85 0.61 2.31 16 21 C 0.25 6.13 5.44 -5.19 -0.03 6.10 16 22 C -0.53 -13.68 9.38 -34.44 -0.32 -14.00 16 23 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 24 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 25 N -0.89 -25.11 13.29 55.43 0.74 -24.38 16 26 Si 0.89 20.53 29.54 -169.99 -5.02 15.50 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 28 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 29 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 30 H 0.07 1.18 3.43 -51.93 -0.18 1.00 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 1.38 6.61 -51.93 -0.34 1.03 16 33 H 0.08 0.86 8.11 -51.93 -0.42 0.44 16 34 H 0.04 0.61 6.57 -51.93 -0.34 0.27 16 35 H 0.08 0.79 7.99 -51.93 -0.42 0.38 16 36 H 0.08 0.77 8.09 -51.93 -0.42 0.35 16 37 H 0.12 1.05 8.02 -52.48 -0.42 0.63 16 38 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 39 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 41 H 0.12 1.15 8.02 -52.49 -0.42 0.73 16 42 H 0.04 0.58 6.64 -51.93 -0.34 0.23 16 43 H 0.08 0.99 8.04 -51.92 -0.42 0.58 16 44 H 0.10 1.75 6.80 -51.93 -0.35 1.40 16 45 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 46 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.07 1.23 8.11 -51.93 -0.42 0.81 16 48 H 0.07 1.05 4.83 -51.93 -0.25 0.80 16 49 H 0.04 0.94 8.11 -51.93 -0.42 0.52 16 50 H 0.04 1.16 7.24 -51.93 -0.38 0.78 16 51 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 401.55 15.07 6.05 6.05 Total: -1.00 -31.23 401.55 -12.51 -43.74 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -8.05 Total: 3.97 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -2.15 Total: -9.22 kcal Atomic # 7 Polarization: -70.40 SS G_CDS: -1.16 Total: -71.55 kcal Atomic # 8 Polarization: -42.83 SS G_CDS: -1.58 Total: -44.41 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 56.51 SS G_CDS: -0.60 Total: 55.91 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.23 -12.51 -43.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069703261.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.623 kcal (2) G-P(sol) polarization free energy of solvation -31.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds