Wall clock time and date at job start Tue Mar 31 2020 06:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39762 * 125.83877 * 2 1 4 4 C 1.36109 * 107.82384 * 180.15109 * 3 2 1 5 5 N 1.39469 * 126.21151 * 179.85069 * 4 3 2 6 6 C 1.34779 * 120.00073 * 359.68885 * 5 4 3 7 7 O 1.21291 * 120.00103 * 0.02562 * 6 5 4 8 8 C 1.50705 * 119.99875 * 180.02562 * 6 5 4 9 9 H 1.08996 * 109.47210 * 299.99497 * 8 6 5 10 10 C 1.52996 * 109.47120 * 60.00264 * 8 6 5 11 11 N 1.46901 * 109.46749 * 180.02562 * 8 6 5 12 12 C 1.47163 * 111.00338 * 67.86458 * 11 8 6 13 13 C 1.52897 * 108.50744 * 52.15051 * 12 11 8 14 14 C 1.50717 * 109.96085 * 50.38599 * 13 12 11 15 15 C 1.38676 * 118.48784 * 163.12643 * 14 13 12 16 16 C 1.38032 * 120.34765 * 179.83606 * 15 14 13 17 17 C 1.38262 * 119.82953 * 359.97438 * 16 15 14 18 18 C 1.38017 * 119.86693 * 0.07335 * 17 16 15 19 19 C 1.37826 * 121.65952 * 343.10284 * 14 13 12 20 20 C 1.46637 * 110.99931 * 190.84911 * 11 8 6 21 21 N 1.35257 * 107.57137 * 359.58524 * 4 3 2 22 22 C 1.46500 * 126.04710 * 180.22373 * 21 4 3 23 23 C 1.50700 * 109.46769 * 90.00451 * 22 21 4 24 24 H 1.07998 * 120.00187 * 359.97438 * 23 22 21 25 25 C 1.37880 * 120.00087 * 179.97438 * 23 22 21 26 26 N 1.31520 * 119.99663 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 120.00166 * 179.97438 * 25 23 22 28 28 H 1.48495 * 109.47151 * 0.02562 * 27 25 23 29 29 H 1.48502 * 109.47060 * 120.00445 * 27 25 23 30 30 H 1.48502 * 109.47443 * 240.00248 * 27 25 23 31 31 N 1.30854 * 125.83761 * 179.68920 * 2 1 3 32 32 H 1.08999 * 109.46742 * 270.29450 * 1 2 3 33 33 H 1.08999 * 109.47415 * 30.29109 * 1 2 3 34 34 H 1.09002 * 109.46998 * 150.29783 * 1 2 3 35 35 H 1.07993 * 126.08334 * 0.02562 * 3 2 1 36 36 H 0.96998 * 120.00152 * 179.69117 * 5 4 3 37 37 H 1.08998 * 109.46818 * 187.20762 * 10 8 6 38 38 H 1.09003 * 109.46961 * 307.19655 * 10 8 6 39 39 H 1.08992 * 109.47372 * 67.20587 * 10 8 6 40 40 H 1.08996 * 109.62913 * 171.86182 * 12 11 8 41 41 H 1.09001 * 109.62708 * 292.24583 * 12 11 8 42 42 H 1.09002 * 109.38480 * 170.53930 * 13 12 11 43 43 H 1.09003 * 109.38967 * 290.33564 * 13 12 11 44 44 H 1.08000 * 119.82972 * 359.86477 * 15 14 13 45 45 H 1.07998 * 120.08820 * 179.97438 * 16 15 14 46 46 H 1.08005 * 120.07181 * 180.09035 * 17 16 15 47 47 H 1.08001 * 119.81210 * 180.02562 * 18 17 16 48 48 H 1.09000 * 109.30293 * 49.44779 * 20 11 8 49 49 H 1.08995 * 109.30300 * 168.82716 * 20 11 8 50 50 H 1.08995 * 109.46931 * 209.99980 * 22 21 4 51 51 H 1.09001 * 109.47111 * 330.00582 * 22 21 4 52 52 H 0.97003 * 119.99777 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6197 0.7121 -0.0034 5 7 4.7512 1.5274 -0.0075 6 6 4.6156 2.8683 -0.0147 7 8 3.5096 3.3660 -0.0171 8 6 5.8384 3.7493 -0.0197 9 1 6.4337 3.5496 0.8712 10 6 6.6735 3.4555 -1.2676 11 7 5.4260 5.1592 -0.0266 12 6 4.7816 5.5265 1.2445 13 6 5.7052 5.1182 2.3925 14 6 7.0968 5.6410 2.1443 15 6 7.9844 5.6905 3.2086 16 6 9.2695 6.1593 3.0237 17 6 9.6740 6.5813 1.7707 18 6 8.7910 6.5333 0.7111 19 6 7.4983 6.0647 0.8957 20 6 6.5688 6.0397 -0.2892 21 7 3.6092 -0.6404 0.0039 22 6 4.7870 -1.5116 0.0080 23 6 5.1914 -1.8028 1.4302 24 1 4.6278 -1.3807 2.2491 25 6 6.2811 -2.6080 1.6861 26 7 6.9678 -3.1215 0.6889 27 14 6.7828 -2.9683 3.4490 28 1 5.8549 -2.2761 4.3790 29 1 6.7245 -4.4323 3.6908 30 1 8.1675 -2.4834 3.6786 31 7 2.2731 -1.0608 0.0058 32 1 -0.3633 0.0053 1.0277 33 1 -0.3634 0.8873 -0.5183 34 1 -0.3633 -0.8927 -0.5092 35 1 1.9902 2.1596 0.0004 36 1 5.6358 1.1294 -0.0052 37 1 7.6177 3.9969 -1.2085 38 1 6.8715 2.3854 -1.3286 39 1 6.1263 3.7750 -2.1544 40 1 4.6158 6.6034 1.2731 41 1 3.8279 5.0066 1.3351 42 1 5.3249 5.5307 3.3271 43 1 5.7359 4.0308 2.4630 44 1 7.6688 5.3601 4.1872 45 1 9.9572 6.1964 3.8556 46 1 10.6791 6.9475 1.6214 47 1 9.1081 6.8628 -0.2674 48 1 7.1092 5.6775 -1.1638 49 1 6.2081 7.0494 -0.4851 50 1 4.5496 -2.4459 -0.5007 51 1 5.6082 -1.0149 -0.5088 52 1 7.7346 -3.6877 0.8688 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069704657.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:44 Heat of formation + Delta-G solvation = 80.857639 kcal Electronic energy + Delta-G solvation = -34011.371338 eV Core-core repulsion = 29784.608668 eV Total energy + Delta-G solvation = -4226.762670 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 368.195 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.24981 -40.57043 -39.14383 -37.23772 -34.72875 -33.78918 -33.37239 -32.28619 -31.97600 -30.49860 -29.29919 -28.99896 -28.01965 -26.03035 -25.70269 -23.75624 -23.43689 -22.78185 -22.37160 -21.33211 -19.86432 -19.52230 -18.62001 -17.00967 -16.96462 -16.77905 -16.53269 -15.96654 -15.76683 -15.49732 -15.14141 -14.76835 -14.71249 -14.45349 -14.03203 -13.98729 -13.87354 -13.42067 -13.33902 -12.94054 -12.76799 -12.69255 -12.58700 -12.47857 -12.33669 -12.16767 -12.05365 -11.83454 -11.74856 -11.66029 -11.56350 -11.53096 -11.20283 -11.06296 -10.92264 -10.75792 -10.36507 -10.27127 -9.80705 -9.79284 -9.39350 -8.99615 -8.80361 -8.73901 -8.46781 -7.89414 -7.40604 -6.34825 -4.43032 1.10790 1.14429 2.30410 2.76388 3.12709 3.13384 3.22436 3.28276 3.50118 3.61102 3.66732 3.88991 4.23107 4.47698 4.50401 4.66064 4.66635 4.74906 4.83092 4.90204 4.96108 4.98721 5.01022 5.18369 5.25908 5.35602 5.38532 5.39401 5.46553 5.53604 5.61753 5.66128 5.74291 5.77714 5.86240 5.95230 6.02740 6.05320 6.17318 6.19121 6.22228 6.28045 6.30115 6.38343 6.46865 6.65858 6.77706 6.78546 6.83373 6.86252 7.05104 7.54166 7.58820 7.65728 7.79083 7.95460 8.36458 8.62731 8.72287 9.24616 10.72323 Molecular weight = 368.20amu Principal moments of inertia in cm(-1) A = 0.007844 B = 0.003276 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3568.882463 B = 8545.402901 C =10867.340607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.296 4.296 4 C 0.304 3.696 5 N -0.641 5.641 6 C 0.526 3.474 7 O -0.497 6.497 8 C 0.062 3.938 9 H 0.081 0.919 10 C -0.151 4.151 11 N -0.501 5.501 12 C 0.048 3.952 13 C -0.125 4.125 14 C -0.075 4.075 15 C -0.117 4.117 16 C -0.120 4.120 17 C -0.123 4.123 18 C -0.114 4.114 19 C -0.114 4.114 20 C 0.085 3.915 21 N -0.345 5.345 22 C 0.257 3.743 23 C -0.539 4.539 24 H 0.065 0.935 25 C 0.067 3.933 26 N -0.889 5.889 27 Si 0.904 3.096 28 H -0.271 1.271 29 H -0.279 1.279 30 H -0.281 1.281 31 N -0.286 5.286 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.161 0.839 36 H 0.414 0.586 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.103 0.897 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.120 0.880 47 H 0.122 0.878 48 H 0.095 0.905 49 H 0.093 0.907 50 H 0.056 0.944 51 H 0.043 0.957 52 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.389 20.437 -0.525 20.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.328 4.328 4 C 0.082 3.918 5 N -0.289 5.289 6 C 0.311 3.689 7 O -0.369 6.369 8 C -0.050 4.050 9 H 0.098 0.902 10 C -0.209 4.209 11 N -0.222 5.222 12 C -0.080 4.080 13 C -0.163 4.163 14 C -0.076 4.076 15 C -0.135 4.135 16 C -0.138 4.138 17 C -0.141 4.141 18 C -0.132 4.132 19 C -0.116 4.116 20 C -0.043 4.043 21 N -0.131 5.131 22 C 0.139 3.861 23 C -0.578 4.578 24 H 0.083 0.917 25 C -0.137 4.137 26 N -0.527 5.527 27 Si 0.731 3.269 28 H -0.196 1.196 29 H -0.205 1.205 30 H -0.207 1.207 31 N -0.112 5.112 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.179 0.821 36 H 0.251 0.749 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.122 0.878 42 H 0.102 0.898 43 H 0.098 0.902 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.138 0.862 47 H 0.140 0.860 48 H 0.114 0.886 49 H 0.111 0.889 50 H 0.074 0.926 51 H 0.061 0.939 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.572 19.412 -0.983 19.606 hybrid contribution 1.874 0.096 1.820 2.615 sum 4.447 19.508 0.838 20.026 Atomic orbital electron populations 1.20012 0.87646 1.02301 1.02092 1.22031 0.96483 0.91099 1.01871 1.21261 0.89040 1.00408 1.22044 1.17921 0.88010 0.83284 1.02611 1.42800 1.08189 1.05605 1.72266 1.20328 0.91186 0.81072 0.76311 1.90593 1.26458 1.73378 1.46465 1.21588 0.93368 0.89138 1.00868 0.90195 1.21962 0.99489 1.02775 0.96653 1.62390 1.25515 1.00567 1.33725 1.22406 0.98289 1.01874 0.85425 1.21202 0.92337 1.01631 1.01151 1.19606 0.95950 0.99129 0.92886 1.21137 0.93749 0.99934 0.98659 1.21102 0.96089 0.99254 0.97384 1.21088 0.99546 1.00398 0.93106 1.21062 0.93053 1.00003 0.99102 1.20419 0.95650 0.99852 0.95678 1.21323 0.89536 0.98292 0.95110 1.49335 1.06502 1.02213 1.55038 1.19605 0.77860 0.89777 0.98863 1.21381 1.13233 1.31770 0.91375 0.91691 1.24928 0.95716 0.94884 0.98122 1.69928 1.19156 1.32596 1.31040 0.86328 0.78334 0.78484 0.83745 1.19568 1.20490 1.20654 1.77351 0.86142 1.21821 1.25865 0.91378 0.91155 0.91601 0.82130 0.74922 0.90988 0.91077 0.90613 0.90284 0.87843 0.89842 0.90241 0.86135 0.86161 0.86160 0.86011 0.88649 0.88904 0.92573 0.93895 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.44 36.01 0.38 -0.55 16 2 C 0.05 1.01 7.21 -82.44 -0.59 0.42 16 3 C -0.30 -6.07 9.58 -39.78 -0.38 -6.45 16 4 C 0.30 6.42 7.66 -153.17 -1.17 5.24 16 5 N -0.64 -11.22 5.26 -11.46 -0.06 -11.28 16 6 C 0.53 8.27 6.90 -10.98 -0.08 8.20 16 7 O -0.50 -8.86 11.60 5.55 0.06 -8.80 16 8 C 0.06 0.76 1.86 -68.86 -0.13 0.63 16 9 H 0.08 0.99 5.29 -51.93 -0.27 0.72 16 10 C -0.15 -1.56 8.28 37.16 0.31 -1.25 16 11 N -0.50 -5.69 4.60 -229.59 -1.06 -6.75 16 12 C 0.05 0.54 5.60 -3.73 -0.02 0.52 16 13 C -0.12 -1.34 5.15 -27.93 -0.14 -1.48 16 14 C -0.08 -0.80 5.12 -104.60 -0.54 -1.34 16 15 C -0.12 -1.18 9.66 -39.50 -0.38 -1.57 16 16 C -0.12 -1.11 10.05 -39.65 -0.40 -1.51 16 17 C -0.12 -1.07 10.05 -39.65 -0.40 -1.47 16 18 C -0.11 -1.00 9.65 -39.48 -0.38 -1.38 16 19 C -0.11 -1.12 5.39 -104.62 -0.56 -1.68 16 20 C 0.09 0.78 5.17 -5.15 -0.03 0.75 16 21 N -0.35 -8.12 3.60 -61.58 -0.22 -8.34 16 22 C 0.26 6.41 6.01 -5.19 -0.03 6.38 16 23 C -0.54 -14.46 9.39 -34.44 -0.32 -14.78 16 24 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 25 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 26 N -0.89 -24.22 13.29 55.43 0.74 -23.48 16 27 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 28 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 29 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 30 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 31 N -0.29 -6.71 12.56 33.65 0.42 -6.29 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.16 3.20 5.83 -52.49 -0.31 2.90 16 36 H 0.41 6.82 7.31 -40.82 -0.30 6.52 16 37 H 0.07 0.62 6.56 -51.93 -0.34 0.28 16 38 H 0.07 0.74 7.37 -51.93 -0.38 0.36 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.08 0.79 8.05 -51.93 -0.42 0.37 16 41 H 0.10 1.37 6.23 -51.93 -0.32 1.05 16 42 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.08 0.96 6.67 -51.93 -0.35 0.61 16 44 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 45 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 46 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 47 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 48 H 0.10 0.76 5.68 -51.93 -0.30 0.47 16 49 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 51 H 0.04 1.04 7.50 -51.93 -0.39 0.65 16 52 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 412.21 15.07 6.21 6.21 Total: -1.00 -31.48 412.21 -11.46 -42.95 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -7.57 Total: 9.80 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -4.97 Total: -9.65 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: -0.18 Total: -56.15 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.06 Total: -8.80 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -31.48 -11.46 -42.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069704657.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.806 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds