Wall clock time and date at job start Tue Mar 31 2020 07:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38310 * 119.96472 * 2 1 4 4 C 1.38259 * 120.15144 * 180.02562 * 3 2 1 5 5 C 1.38133 * 120.07253 * 0.25563 * 4 3 2 6 6 C 1.38888 * 119.92623 * 359.49587 * 5 4 3 7 7 N 1.39669 * 120.07648 * 180.27463 * 6 5 4 8 8 C 1.46499 * 120.00175 * 60.29093 * 7 6 5 9 9 C 1.50700 * 109.47094 * 84.99947 * 8 7 6 10 10 H 1.08006 * 119.99750 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00238 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99749 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00209 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.46944 * 90.00080 * 13 11 9 15 15 H 1.48501 * 109.47194 * 210.00020 * 13 11 9 16 16 H 1.48500 * 109.46972 * 330.00460 * 13 11 9 17 17 S 1.65599 * 119.99866 * 240.29130 * 7 6 5 18 18 O 1.42100 * 106.40392 * 209.17895 * 17 7 6 19 19 O 1.42094 * 106.40587 * 342.09979 * 17 7 6 20 20 C 1.76204 * 107.21814 * 95.64188 * 17 7 6 21 21 N 1.34167 * 125.99206 * 90.01821 * 20 17 7 22 22 C 1.30476 * 109.26890 * 179.97438 * 21 20 17 23 23 N 1.35160 * 108.71289 * 0.02562 * 22 21 20 24 24 C 1.46497 * 126.40208 * 179.97438 * 23 22 21 25 25 C 1.34789 * 125.99209 * 269.71764 * 20 17 7 26 26 Cl 1.73601 * 126.59793 * 0.02562 * 25 20 17 27 27 C 1.38077 * 119.96004 * 180.02562 * 2 1 3 28 28 H 1.09007 * 109.47265 * 89.99413 * 1 2 3 29 29 H 1.08994 * 109.47270 * 209.99781 * 1 2 3 30 30 H 1.08996 * 109.47014 * 330.00186 * 1 2 3 31 31 H 1.08001 * 119.92348 * 0.04409 * 3 2 1 32 32 H 1.08000 * 119.96733 * 179.97438 * 4 3 2 33 33 H 1.07998 * 120.03116 * 179.74472 * 5 4 3 34 34 H 1.08996 * 109.47537 * 205.00156 * 8 7 6 35 35 H 1.09001 * 109.47012 * 325.00378 * 8 7 6 36 36 H 0.97002 * 119.99577 * 179.97438 * 12 11 9 37 37 H 1.07999 * 125.64558 * 179.97438 * 22 21 20 38 38 H 1.09007 * 109.47048 * 90.02703 * 24 23 22 39 39 H 1.08994 * 109.47031 * 210.02775 * 24 23 22 40 40 H 1.09002 * 109.47076 * 330.02891 * 24 23 22 41 41 H 1.07996 * 120.04229 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2027 -0.0005 5 6 4.2765 0.0096 -0.0064 6 6 3.5860 -1.1954 -0.0012 7 7 4.2866 -2.4037 -0.0013 8 6 5.2023 -2.7196 1.0978 9 6 4.4284 -3.3348 2.2352 10 1 3.3613 -3.4767 2.1478 11 6 5.0826 -3.7166 3.3873 12 7 6.3820 -3.5433 3.4938 13 14 4.1235 -4.4799 4.7969 14 1 4.0836 -5.9547 4.6271 15 1 4.7860 -4.1475 6.0837 16 1 2.7384 -3.9444 4.8003 17 16 4.0824 -3.4791 -1.2439 18 8 4.3090 -4.7712 -0.6976 19 8 2.8751 -3.1125 -1.8975 20 6 5.3809 -3.1930 -2.4000 21 7 6.5846 -3.7857 -2.3964 22 6 7.2899 -3.3340 -3.3968 23 7 6.5499 -2.4295 -4.0758 24 6 6.9657 -1.6836 -5.2661 25 6 5.3372 -2.3446 -3.4465 26 17 4.0014 -1.3351 -3.9053 27 6 2.1965 -1.1963 -0.0005 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6560 2.1325 0.0007 32 1 4.1168 2.1401 -0.0010 33 1 5.3564 0.0139 -0.0110 34 1 5.9583 -3.4235 0.7500 35 1 5.6872 -1.8056 1.4408 36 1 6.8421 -3.8115 4.3045 37 1 8.2986 -3.6327 -3.6414 38 1 6.7007 -2.2485 -6.1599 39 1 6.4614 -0.7175 -5.2840 40 1 8.0445 -1.5298 -5.2400 41 1 1.6566 -2.1316 -0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069744489.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:57 Heat of formation + Delta-G solvation = 21.883421 kcal Electronic energy + Delta-G solvation = -29832.165510 eV Core-core repulsion = 25673.780696 eV Total energy + Delta-G solvation = -4158.384814 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 369.070 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.34069 -39.11636 -37.08756 -36.48940 -35.54913 -35.14180 -34.45664 -32.59038 -31.95518 -29.78088 -29.44734 -27.54861 -26.61814 -26.51352 -22.78610 -22.58340 -22.12134 -21.63128 -20.59238 -18.70080 -17.90196 -17.05383 -16.52074 -16.31944 -16.00056 -15.80899 -15.50746 -14.92427 -14.89557 -14.64921 -14.23240 -13.95425 -13.54226 -13.41601 -13.29643 -13.26729 -12.71116 -12.47938 -12.18422 -12.16576 -11.96386 -11.79445 -11.54354 -11.41281 -11.28770 -11.19162 -11.13955 -10.98800 -10.88455 -10.67454 -10.43651 -10.15160 -10.10242 -9.99448 -9.84061 -8.90738 -8.73574 -8.36477 -8.26122 -7.69765 -5.98192 -4.01258 0.83331 1.24935 1.31810 1.82789 1.89302 2.52478 2.56101 3.40113 3.45492 3.49111 3.66213 4.18059 4.19513 4.30302 4.42545 4.52688 4.54429 4.64044 4.92020 5.19858 5.24874 5.31119 5.39018 5.49771 5.58012 5.63061 5.76608 5.79178 5.85952 5.99109 6.01979 6.10845 6.43966 6.54380 6.65821 6.81926 6.97799 7.03789 7.23011 7.35131 7.39502 7.55024 7.82867 7.98831 8.24374 8.99329 9.62577 11.10829 Molecular weight = 369.07amu Principal moments of inertia in cm(-1) A = 0.008684 B = 0.005101 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3223.530712 B = 5487.713176 C = 7416.888923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.080 4.080 3 C -0.134 4.134 4 C -0.111 4.111 5 C -0.126 4.126 6 C 0.180 3.820 7 N -0.933 5.933 8 C 0.255 3.745 9 C -0.523 4.523 10 H 0.062 0.938 11 C 0.064 3.936 12 N -0.895 5.895 13 Si 0.897 3.103 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.273 1.273 17 S 2.704 3.296 18 O -0.918 6.918 19 O -0.952 6.952 20 C -0.523 4.523 21 N -0.395 5.395 22 C 0.196 3.804 23 N -0.454 5.454 24 C 0.062 3.938 25 C 0.116 3.884 26 Cl 0.032 6.968 27 C -0.104 4.104 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.048 0.952 35 H 0.039 0.961 36 H 0.263 0.737 37 H 0.225 0.775 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.815 10.072 -18.204 20.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.081 4.081 3 C -0.153 4.153 4 C -0.130 4.130 5 C -0.147 4.147 6 C 0.085 3.915 7 N -0.765 5.765 8 C 0.136 3.864 9 C -0.562 4.562 10 H 0.081 0.919 11 C -0.138 4.138 12 N -0.535 5.535 13 Si 0.724 3.276 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.197 1.197 17 S 2.789 3.211 18 O -0.908 6.908 19 O -0.942 6.942 20 C -0.733 4.733 21 N -0.110 5.110 22 C -0.089 4.089 23 N -0.138 5.138 24 C -0.080 4.080 25 C -0.032 4.032 26 Cl 0.060 6.940 27 C -0.125 4.125 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.241 0.759 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.118 0.882 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.001 8.908 -17.780 19.912 hybrid contribution 0.236 0.655 -0.198 0.724 sum -0.766 9.563 -17.978 20.378 Atomic orbital electron populations 1.20748 0.91477 1.02503 1.01977 1.19665 0.95754 0.92660 1.00013 1.20875 0.94139 0.97019 1.03244 1.20855 0.94088 0.97201 1.00883 1.21212 1.00068 0.91687 1.01745 1.17291 0.90178 0.85434 0.98625 1.55480 1.56199 1.29553 1.35307 1.19324 0.87492 0.97193 0.82440 1.21390 0.94998 1.40464 0.99383 0.91943 1.24886 0.94917 0.95577 0.98453 1.69928 1.07719 1.47741 1.28070 0.86512 0.80053 0.79869 0.81153 1.20323 1.21215 1.19731 1.02108 0.72792 0.73973 0.72184 1.93620 1.85110 1.35659 1.76410 1.93580 1.40344 1.84036 1.76204 1.34007 1.14889 1.08641 1.15776 1.70542 1.00747 1.21762 1.17984 1.25408 0.99648 0.92204 0.91653 1.45627 1.11049 1.33105 1.24012 1.22269 1.03014 0.97353 0.85315 1.21674 0.85782 0.99497 0.96206 1.98464 1.37958 1.65504 1.92033 1.21229 0.92973 0.98337 0.99943 0.91452 0.91511 0.91906 0.86643 0.86396 0.86090 0.93396 0.94275 0.92728 0.75916 0.89562 0.89053 0.88202 0.85590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 10.01 36.00 0.36 -1.01 16 2 C -0.08 -1.27 5.88 -104.66 -0.62 -1.88 16 3 C -0.13 -1.91 9.70 -39.55 -0.38 -2.29 16 4 C -0.11 -1.65 10.04 -39.61 -0.40 -2.05 16 5 C -0.13 -2.22 9.41 -39.38 -0.37 -2.59 16 6 C 0.18 3.62 5.24 -83.79 -0.44 3.18 16 7 N -0.93 -21.03 2.83 -59.81 -0.17 -21.20 16 8 C 0.26 6.71 5.01 -5.19 -0.03 6.68 16 9 C -0.52 -15.12 9.36 -34.44 -0.32 -15.44 16 10 H 0.06 1.80 7.81 -52.48 -0.41 1.39 16 11 C 0.06 1.85 5.46 -17.82 -0.10 1.76 16 12 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 13 Si 0.90 22.40 29.54 -169.99 -5.02 17.38 16 14 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 16 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 17 S 2.70 59.46 5.67 -107.50 -0.61 58.85 16 18 O -0.92 -23.83 17.20 -57.18 -0.98 -24.81 16 19 O -0.95 -19.82 13.93 -57.18 -0.80 -20.61 16 20 C -0.52 -9.96 7.14 -17.75 -0.13 -10.09 16 21 N -0.39 -7.30 11.25 -13.80 -0.16 -7.46 16 22 C 0.20 2.49 12.57 -90.29 -1.13 1.35 16 23 N -0.45 -5.26 3.16 -122.46 -0.39 -5.65 16 24 C 0.06 0.36 11.05 59.85 0.66 1.02 16 25 C 0.12 1.79 7.46 -16.52 -0.12 1.67 16 26 Cl 0.03 0.45 27.25 -51.86 -1.41 -0.97 16 27 C -0.10 -1.97 8.26 -39.38 -0.33 -2.29 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 30 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 31 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 33 H 0.12 2.07 7.95 -52.49 -0.42 1.65 16 34 H 0.05 1.35 7.76 -51.93 -0.40 0.95 16 35 H 0.04 1.04 7.57 -51.93 -0.39 0.64 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.22 1.64 8.06 -52.49 -0.42 1.21 16 38 H 0.09 0.37 8.14 -51.92 -0.42 -0.06 16 39 H 0.09 0.49 7.93 -51.93 -0.41 0.08 16 40 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.13 2.45 7.52 -52.49 -0.39 2.05 16 LS Contribution 381.65 15.07 5.75 5.75 Total: -1.00 -36.98 381.65 -11.33 -48.31 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -4.94 Total: -1.64 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: -3.34 Total: -21.99 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: 0.03 Total: -60.27 kcal Atomic # 8 Polarization: -43.64 SS G_CDS: -1.78 Total: -45.42 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Atomic # 16 Polarization: 59.46 SS G_CDS: -0.61 Total: 58.85 kcal Atomic # 17 Polarization: 0.45 SS G_CDS: -1.41 Total: -0.97 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.98 -11.33 -48.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069744489.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.194 kcal (2) G-P(sol) polarization free energy of solvation -36.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds