Wall clock time and date at job start Tue Mar 31 2020 06:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39724 * 125.77977 * 2 1 4 4 C 1.36155 * 107.85987 * 180.14498 * 3 2 1 5 5 N 1.39375 * 126.26247 * 179.90657 * 4 3 2 6 6 C 1.34774 * 120.00287 * 359.68427 * 5 4 3 7 7 O 1.21596 * 119.99951 * 0.02562 * 6 5 4 8 8 C 1.47613 * 119.99835 * 180.02562 * 6 5 4 9 9 C 1.39740 * 120.06889 * 180.02562 * 8 6 5 10 10 C 1.37721 * 119.96232 * 180.30164 * 9 8 6 11 11 C 1.39012 * 120.10731 * 359.43976 * 10 9 8 12 12 N 1.39899 * 119.92960 * 180.25920 * 11 10 9 13 13 C 1.36608 * 125.67471 * 129.98718 * 12 11 10 14 14 C 1.34825 * 108.19856 * 179.83353 * 13 12 11 15 15 C 1.40975 * 107.47255 * 0.42456 * 14 13 12 16 16 C 1.34826 * 107.47963 * 359.74046 * 15 14 13 17 17 C 1.39228 * 120.14485 * 0.55548 * 11 10 9 18 18 F 1.35103 * 119.98685 * 179.69814 * 17 11 10 19 19 C 1.37927 * 120.03979 * 359.72821 * 17 11 10 20 20 N 1.35803 * 107.46841 * 359.64022 * 4 3 2 21 21 C 1.46506 * 126.09062 * 180.19257 * 20 4 3 22 22 C 1.50701 * 109.46966 * 90.00171 * 21 20 4 23 23 H 1.08001 * 120.00337 * 359.97438 * 22 21 20 24 24 C 1.37882 * 119.99646 * 180.02562 * 22 21 20 25 25 N 1.31510 * 119.99893 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99844 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.47085 * 359.97438 * 26 24 22 28 28 H 1.48506 * 109.47279 * 119.99508 * 26 24 22 29 29 H 1.48491 * 109.47138 * 239.99772 * 26 24 22 30 30 N 1.30833 * 125.77604 * 179.74296 * 2 1 3 31 31 H 1.09002 * 109.46567 * 270.23817 * 1 2 3 32 32 H 1.09006 * 109.47038 * 30.23467 * 1 2 3 33 33 H 1.08999 * 109.47195 * 150.23738 * 1 2 3 34 34 H 1.07996 * 126.07451 * 0.02562 * 3 2 1 35 35 H 0.97003 * 119.99891 * 179.68718 * 5 4 3 36 36 H 1.08002 * 120.01629 * 0.02562 * 9 8 6 37 37 H 1.07995 * 119.94649 * 179.72144 * 10 9 8 38 38 H 1.08006 * 125.90294 * 359.96650 * 13 12 11 39 39 H 1.07992 * 126.26499 * 180.13070 * 14 13 12 40 40 H 1.07999 * 126.26039 * 179.69452 * 15 14 13 41 41 H 1.07995 * 125.90120 * 179.97438 * 16 15 14 42 42 H 1.07991 * 120.06092 * 180.02562 * 19 17 11 43 43 H 1.09006 * 109.47177 * 209.99828 * 21 20 4 44 44 H 1.09000 * 109.46881 * 329.99879 * 21 20 4 45 45 H 0.97006 * 119.99623 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3239 1.1335 0.0000 4 6 3.6194 0.7146 -0.0033 5 7 4.7496 1.5302 -0.0062 6 6 4.6131 2.8710 -0.0124 7 8 3.5038 3.3692 -0.0149 8 6 5.8101 3.7348 -0.0161 9 6 5.6702 5.1252 -0.0220 10 6 6.7885 5.9289 -0.0317 11 6 8.0566 5.3595 -0.0239 12 7 9.1901 6.1795 -0.0283 13 6 10.2516 6.0760 0.8253 14 6 11.1434 7.0357 0.5065 15 6 10.6113 7.7650 -0.5763 16 6 9.4166 7.2208 -0.8832 17 6 8.2012 3.9747 -0.0179 18 9 9.4352 3.4247 -0.0166 19 6 7.0854 3.1640 -0.0141 20 7 3.6088 -0.6434 0.0029 21 6 4.7858 -1.5156 0.0061 22 6 5.1903 -1.8083 1.4280 23 1 4.6272 -1.3865 2.2474 24 6 6.2799 -2.6139 1.6829 25 7 6.9658 -3.1272 0.6851 26 14 6.7816 -2.9761 3.4454 27 1 5.8545 -2.2838 4.3762 28 1 6.7231 -4.4404 3.6857 29 1 8.1663 -2.4917 3.6753 30 7 2.2719 -1.0615 0.0048 31 1 -0.3632 0.0043 1.0277 32 1 -0.3633 0.8879 -0.5175 33 1 -0.3633 -0.8921 -0.5101 34 1 1.9876 2.1598 0.0004 35 1 5.6345 1.1329 -0.0039 36 1 4.6857 5.5691 -0.0234 37 1 6.6801 7.0034 -0.0408 38 1 10.3590 5.3495 1.6172 39 1 12.0897 7.2159 0.9946 40 1 11.0755 8.6064 -1.0693 41 1 8.7533 7.5511 -1.6688 42 1 7.1971 2.0899 -0.0090 43 1 4.5475 -2.4494 -0.5034 44 1 5.6073 -1.0192 -0.5105 45 1 7.7322 -3.6942 0.8645 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069807655.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:57 Heat of formation + Delta-G solvation = 87.509150 kcal Electronic energy + Delta-G solvation = -31785.933236 eV Core-core repulsion = 27300.165598 eV Total energy + Delta-G solvation = -4485.767638 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 368.139 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -49.32958 -41.79934 -41.05976 -39.87666 -38.33321 -35.00488 -33.89614 -33.63357 -32.15002 -31.28948 -29.87404 -29.14951 -29.09350 -28.08080 -26.09888 -24.70271 -23.52867 -22.89781 -21.82524 -20.65747 -20.58625 -19.99493 -19.62686 -18.79201 -17.78758 -17.19409 -16.91116 -16.63836 -16.22185 -16.06519 -15.33204 -15.27365 -14.93816 -14.74908 -14.59240 -14.31060 -14.24187 -14.11107 -13.92668 -13.58213 -12.98657 -12.84730 -12.78359 -12.63777 -12.57853 -12.53649 -12.37449 -12.10731 -12.04724 -11.85617 -11.64333 -11.12573 -10.96269 -10.53973 -10.40786 -10.15824 -10.01861 -9.85231 -9.67632 -9.44936 -8.78218 -8.69069 -8.52330 -7.99817 -7.55649 -6.39222 -4.48110 -0.01598 0.59407 1.82726 2.20833 2.40799 2.58253 2.73876 2.80657 3.11499 3.20630 3.25157 3.28017 3.53218 3.57288 3.65245 4.08298 4.19527 4.28577 4.51799 4.52960 4.66731 4.90281 4.94160 5.03801 5.13565 5.24454 5.28268 5.35241 5.39781 5.50831 5.56074 5.70701 5.94665 5.95481 5.98906 6.03097 6.08047 6.11271 6.18131 6.29831 6.56022 6.61417 6.75007 6.82464 6.96619 7.06486 7.37490 7.46453 7.54339 7.72347 7.75915 8.09466 8.53515 8.63536 9.20105 10.67839 Molecular weight = 368.14amu Principal moments of inertia in cm(-1) A = 0.008693 B = 0.002766 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3220.139187 B =10120.667531 C =12809.840203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.050 3.950 3 C -0.289 4.289 4 C 0.296 3.704 5 N -0.631 5.631 6 C 0.565 3.435 7 O -0.503 6.503 8 C -0.095 4.095 9 C -0.048 4.048 10 C -0.100 4.100 11 C 0.113 3.887 12 N -0.407 5.407 13 C -0.003 4.003 14 C -0.193 4.193 15 C -0.191 4.191 16 C -0.011 4.011 17 C 0.098 3.902 18 F -0.121 7.121 19 C -0.103 4.103 20 N -0.344 5.344 21 C 0.256 3.744 22 C -0.542 4.542 23 H 0.066 0.934 24 C 0.067 3.933 25 N -0.888 5.888 26 Si 0.905 3.095 27 H -0.271 1.271 28 H -0.279 1.279 29 H -0.280 1.280 30 N -0.280 5.280 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.163 0.837 35 H 0.416 0.584 36 H 0.157 0.843 37 H 0.149 0.851 38 H 0.164 0.836 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.166 0.834 42 H 0.154 0.846 43 H 0.058 0.942 44 H 0.043 0.957 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.934 20.325 -3.092 20.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.320 4.320 4 C 0.075 3.925 5 N -0.277 5.277 6 C 0.352 3.648 7 O -0.378 6.378 8 C -0.099 4.099 9 C -0.068 4.068 10 C -0.119 4.119 11 C 0.021 3.979 12 N -0.081 5.081 13 C -0.129 4.129 14 C -0.217 4.217 15 C -0.215 4.215 16 C -0.137 4.137 17 C 0.077 3.923 18 F -0.100 7.100 19 C -0.123 4.123 20 N -0.130 5.130 21 C 0.138 3.862 22 C -0.580 4.580 23 H 0.084 0.916 24 C -0.137 4.137 25 N -0.526 5.526 26 Si 0.732 3.268 27 H -0.195 1.195 28 H -0.204 1.204 29 H -0.206 1.206 30 N -0.105 5.105 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.180 0.820 35 H 0.254 0.746 36 H 0.174 0.826 37 H 0.167 0.833 38 H 0.181 0.819 39 H 0.159 0.841 40 H 0.159 0.841 41 H 0.183 0.817 42 H 0.172 0.828 43 H 0.076 0.924 44 H 0.061 0.939 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.311 19.004 -3.145 19.400 hybrid contribution 1.469 0.024 0.975 1.764 sum 3.780 19.028 -2.170 19.521 Atomic orbital electron populations 1.20032 0.87479 1.02403 1.02223 1.22030 0.96591 0.90943 1.01908 1.21272 0.88962 1.00524 1.21272 1.17965 0.87696 0.83371 1.03517 1.42582 1.08632 1.05367 1.71168 1.17798 0.88757 0.80989 0.77254 1.90743 1.25504 1.73799 1.47767 1.19725 0.91866 0.94315 1.03993 1.21226 0.99859 0.91222 0.94483 1.20972 0.89175 1.01274 1.00500 1.17948 0.87318 0.88052 1.04629 1.41375 1.14363 1.25171 1.27216 1.22043 0.88467 1.03771 0.98650 1.20990 1.00660 0.98913 1.01116 1.20991 0.96165 1.03217 1.01117 1.21985 1.00398 0.92393 0.98944 1.17326 0.80889 0.89392 1.04666 1.91586 1.39165 1.85512 1.93699 1.21393 0.90328 1.01384 0.99170 1.49531 1.06545 1.01971 1.54941 1.19649 0.77755 0.89773 0.98997 1.21376 1.13373 1.32008 0.91288 0.91598 1.24939 0.95675 0.94824 0.98226 1.69921 1.19162 1.32422 1.31089 0.86316 0.78400 0.78532 0.83595 1.19512 1.20450 1.20584 1.77356 0.86098 1.21807 1.25254 0.91255 0.91089 0.91496 0.82003 0.74634 0.82561 0.83317 0.81881 0.84115 0.84121 0.81712 0.82830 0.92392 0.93929 0.92138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.89 10.44 36.01 0.38 -0.52 16 2 C 0.05 0.97 7.20 -82.46 -0.59 0.38 16 3 C -0.29 -5.66 9.58 -39.78 -0.38 -6.04 16 4 C 0.30 6.02 7.68 -152.75 -1.17 4.85 16 5 N -0.63 -10.55 5.36 -12.27 -0.07 -10.62 16 6 C 0.57 8.39 7.73 -12.44 -0.10 8.29 16 7 O -0.50 -8.39 13.46 5.28 0.07 -8.32 16 8 C -0.10 -1.09 5.87 -104.96 -0.62 -1.71 16 9 C -0.05 -0.45 9.58 -39.21 -0.38 -0.82 16 10 C -0.10 -0.82 9.63 -39.48 -0.38 -1.20 16 11 C 0.11 1.15 5.98 -83.52 -0.50 0.65 16 12 N -0.41 -4.20 2.81 -60.84 -0.17 -4.37 16 13 C 0.00 -0.03 10.36 -16.63 -0.17 -0.20 16 14 C -0.19 -1.85 10.86 -39.76 -0.43 -2.28 16 15 C -0.19 -1.72 10.86 -39.76 -0.43 -2.15 16 16 C -0.01 -0.10 11.10 -16.63 -0.18 -0.29 16 17 C 0.10 1.11 7.19 -39.33 -0.28 0.83 16 18 F -0.12 -1.54 16.25 2.25 0.04 -1.50 16 19 C -0.10 -1.15 9.51 -39.14 -0.37 -1.52 16 20 N -0.34 -7.85 3.62 -61.44 -0.22 -8.07 16 21 C 0.26 6.24 6.02 -5.19 -0.03 6.21 16 22 C -0.54 -14.27 9.39 -34.44 -0.32 -14.59 16 23 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 24 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 25 N -0.89 -23.91 13.29 55.43 0.74 -23.17 16 26 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 27 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 30 N -0.28 -6.35 12.56 33.64 0.42 -5.93 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.16 3.03 5.82 -52.49 -0.31 2.72 16 35 H 0.42 6.44 6.01 -40.82 -0.25 6.19 16 36 H 0.16 1.28 7.64 -52.49 -0.40 0.88 16 37 H 0.15 0.88 8.05 -52.49 -0.42 0.46 16 38 H 0.16 1.52 8.06 -52.48 -0.42 1.10 16 39 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 41 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.15 1.66 6.39 -52.49 -0.34 1.33 16 43 H 0.06 1.53 8.14 -51.93 -0.42 1.10 16 44 H 0.04 1.00 7.52 -51.93 -0.39 0.61 16 45 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 395.02 15.07 5.95 5.95 Total: -1.00 -31.61 395.02 -9.36 -40.96 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -5.03 Total: 8.10 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -6.07 Total: -8.45 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: 0.70 Total: -52.15 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.07 Total: -8.32 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.61 -9.36 -40.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069807655.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.473 kcal (2) G-P(sol) polarization free energy of solvation -31.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds