Wall clock time and date at job start Tue Mar 31 2020 06:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35956 * 116.99936 * 2 1 4 4 C 1.38213 * 120.01750 * 0.21260 * 3 2 1 5 5 C 1.39617 * 119.86877 * 180.23186 * 4 3 2 6 6 C 1.47788 * 120.04970 * 179.78879 * 5 4 3 7 7 N 1.31078 * 125.11857 * 18.42534 * 6 5 4 8 8 C 1.35546 * 109.63039 * 179.97438 * 7 6 5 9 9 C 1.40588 * 107.20984 * 359.74540 * 8 7 6 10 10 C 1.38800 * 119.93186 * 179.66185 * 9 8 7 11 11 C 1.37896 * 119.90083 * 0.57318 * 10 9 8 12 12 C 1.38749 * 120.49791 * 359.70552 * 11 10 9 13 13 C 1.37824 * 120.50074 * 0.02562 * 12 11 10 14 14 F 1.35099 * 120.13443 * 180.02562 * 13 12 11 15 15 N 1.36968 * 125.12280 * 198.42645 * 6 5 4 16 16 C 1.46491 * 126.40093 * 0.02562 * 15 6 5 17 17 C 1.53001 * 117.50040 * 74.81744 * 16 15 6 18 18 C 1.52999 * 117.49985 * 143.47900 * 16 15 6 19 19 C 1.39667 * 119.90314 * 359.51385 * 5 4 3 20 20 C 1.37796 * 120.03104 * 0.27376 * 19 5 4 21 21 C 1.38943 * 120.12647 * 359.97438 * 20 19 5 22 22 O 1.35693 * 119.94978 * 180.02562 * 21 20 19 23 23 C 1.34801 * 116.99689 * 5.76658 * 22 21 20 24 24 H 1.07991 * 120.00066 * 354.91914 * 23 22 21 25 25 C 1.38643 * 119.99724 * 174.92459 * 23 22 21 26 26 N 1.31563 * 119.99989 * 359.97438 * 25 23 22 27 27 Si 1.86792 * 120.00061 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47122 * 59.99546 * 27 25 23 29 29 H 1.48506 * 109.47446 * 179.97438 * 27 25 23 30 30 H 1.48502 * 109.46943 * 299.99787 * 27 25 23 31 31 H 1.08999 * 109.47489 * 60.00115 * 1 2 3 32 32 H 1.08997 * 109.47530 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47347 * 299.99762 * 1 2 3 34 34 H 1.07998 * 120.06615 * 0.02562 * 4 3 2 35 35 H 1.07999 * 120.04229 * 180.25655 * 10 9 8 36 36 H 1.07999 * 119.75040 * 179.73656 * 11 10 9 37 37 H 1.08000 * 119.75010 * 179.97438 * 12 11 10 38 38 H 1.09002 * 115.55149 * 289.14785 * 16 15 6 39 39 H 1.09004 * 117.49783 * 215.00083 * 17 16 15 40 40 H 1.08995 * 117.49812 * 0.02562 * 17 16 15 41 41 H 1.08996 * 117.49738 * 359.96952 * 18 16 15 42 42 H 1.08996 * 117.50078 * 144.97808 * 18 16 15 43 43 H 1.08007 * 119.98756 * 180.25455 * 19 5 4 44 44 H 1.07998 * 119.93435 * 180.02562 * 20 19 5 45 45 H 0.96998 * 119.99836 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2937 2.3708 0.0044 5 6 1.9308 3.6131 -0.0005 6 6 1.1301 4.8553 -0.0005 7 7 -0.1322 4.9388 0.3425 8 6 -0.5515 6.2226 0.2273 9 6 0.5464 6.9805 -0.2163 10 6 0.4050 8.3445 -0.4310 11 6 -0.8093 8.9549 -0.1974 12 6 -1.8958 8.2146 0.2460 13 6 -1.7776 6.8582 0.4600 14 9 -2.8405 6.1444 0.8913 15 7 1.5954 6.0927 -0.3589 16 6 2.9532 6.4155 -0.8039 17 6 3.3482 6.0033 -2.2234 18 6 3.1054 7.4783 -1.8940 19 6 3.3258 3.6803 0.0004 20 6 4.0720 2.5218 0.0004 21 6 3.4394 1.2848 0.0001 22 8 4.1777 0.1463 0.0007 23 6 5.5132 0.2832 0.1222 24 1 5.9566 1.2678 0.1308 25 6 6.3176 -0.8403 0.2360 26 7 5.7774 -2.0399 0.2258 27 14 8.1682 -0.6508 0.4051 28 1 8.4756 0.1358 1.6265 29 1 8.7958 -1.9926 0.5100 30 1 8.7044 0.0552 -0.7863 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 0.2151 2.3158 0.0083 35 1 1.2461 8.9277 -0.7757 36 1 -0.9155 10.0171 -0.3612 37 1 -2.8411 8.7051 0.4256 38 1 3.7235 6.3704 -0.0340 39 1 4.3783 5.6869 -2.3874 40 1 2.5976 5.4922 -2.8263 41 1 2.1952 7.9369 -2.2803 42 1 3.9756 8.1325 -1.8411 43 1 3.8200 4.6406 0.0008 44 1 5.1507 2.5756 0.0015 45 1 6.3402 -2.8259 0.3058 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069836284.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:44 Heat of formation + Delta-G solvation = 32.820685 kcal Electronic energy + Delta-G solvation = -32511.516162 eV Core-core repulsion = 27991.084302 eV Total energy + Delta-G solvation = -4520.431859 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 368.132 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -48.76428 -42.16813 -39.67635 -37.90751 -37.66322 -37.00659 -35.96101 -32.54190 -32.41391 -30.64268 -29.95491 -29.42289 -28.32591 -26.68320 -25.61516 -23.93876 -23.29669 -23.07648 -22.01198 -21.52772 -21.17215 -20.05914 -18.23267 -17.95656 -17.69831 -17.39751 -16.34912 -16.18994 -15.99329 -15.65905 -15.33798 -15.27456 -15.18584 -15.05613 -14.70805 -14.40925 -14.13982 -13.88090 -13.60129 -13.53508 -13.34865 -13.14334 -12.47520 -12.18301 -12.03268 -11.94971 -11.85772 -11.78167 -11.67693 -11.46589 -11.33320 -11.24563 -11.02593 -10.82383 -10.74068 -10.54993 -10.53077 -10.15964 -9.91027 -9.63183 -9.06624 -8.56250 -8.11559 -7.93299 -7.00074 -6.62510 -4.15824 0.62997 1.24965 1.77957 2.05693 2.36929 2.96014 3.02902 3.07789 3.08682 3.21055 3.63009 3.81046 3.95405 4.00939 4.16967 4.24901 4.37925 4.41056 4.46440 4.64281 4.82173 4.89740 4.98431 5.01825 5.14851 5.23859 5.27489 5.41725 5.48930 5.53874 5.57453 5.61773 5.62596 5.63390 5.73524 5.89445 5.91095 6.00768 6.13859 6.16812 6.28347 6.32619 6.42720 6.62523 6.69881 6.85439 7.00767 7.08273 7.17963 7.39591 7.77122 7.94561 8.06383 8.80129 9.48092 10.53206 Molecular weight = 368.13amu Principal moments of inertia in cm(-1) A = 0.013088 B = 0.002642 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.773375 B =10594.150603 C =12368.813170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.301 6.301 3 C 0.055 3.945 4 C -0.114 4.114 5 C -0.120 4.120 6 C 0.378 3.622 7 N -0.496 5.496 8 C 0.024 3.976 9 C 0.071 3.929 10 C -0.118 4.118 11 C -0.090 4.090 12 C -0.167 4.167 13 C 0.143 3.857 14 F -0.132 7.132 15 N -0.466 5.466 16 C 0.056 3.944 17 C -0.161 4.161 18 C -0.174 4.174 19 C -0.067 4.067 20 C -0.220 4.220 21 C 0.152 3.848 22 O -0.147 6.147 23 C -0.392 4.392 24 H 0.096 0.904 25 C 0.042 3.958 26 N -0.845 5.845 27 Si 0.944 3.056 28 H -0.268 1.268 29 H -0.276 1.276 30 H -0.268 1.268 31 H 0.047 0.953 32 H 0.092 0.908 33 H 0.050 0.950 34 H 0.133 0.867 35 H 0.127 0.873 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.116 0.884 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.113 0.887 43 H 0.116 0.884 44 H 0.140 0.860 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.440 19.752 -3.370 21.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.215 6.215 3 C 0.009 3.991 4 C -0.135 4.135 5 C -0.124 4.124 6 C 0.119 3.881 7 N -0.216 5.216 8 C -0.096 4.096 9 C -0.039 4.039 10 C -0.139 4.139 11 C -0.110 4.110 12 C -0.188 4.188 13 C 0.122 3.878 14 F -0.110 7.110 15 N -0.155 5.155 16 C -0.048 4.048 17 C -0.199 4.199 18 C -0.211 4.211 19 C -0.087 4.087 20 C -0.240 4.240 21 C 0.094 3.906 22 O -0.047 6.047 23 C -0.468 4.468 24 H 0.114 0.886 25 C -0.165 4.165 26 N -0.477 5.477 27 Si 0.768 3.232 28 H -0.193 1.193 29 H -0.201 1.201 30 H -0.193 1.193 31 H 0.066 0.934 32 H 0.111 0.889 33 H 0.068 0.932 34 H 0.151 0.849 35 H 0.145 0.855 36 H 0.154 0.846 37 H 0.156 0.844 38 H 0.155 0.845 39 H 0.135 0.865 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.131 0.869 43 H 0.134 0.866 44 H 0.157 0.843 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.770 18.357 -3.125 19.814 hybrid contribution 0.941 0.806 0.000 1.238 sum -5.830 19.162 -3.125 20.272 Atomic orbital electron populations 1.22936 0.79924 1.03060 1.00720 1.86233 1.19763 1.25882 1.89648 1.17988 0.89287 0.84592 1.07209 1.20661 0.99370 0.89858 1.03574 1.16740 0.91187 0.87295 1.17144 1.21765 0.88734 0.84661 0.92966 1.70784 1.08758 1.17133 1.24882 1.18909 0.93415 0.91179 1.06127 1.18540 0.88054 0.92456 1.04810 1.20040 0.98793 0.90342 1.04733 1.20595 0.91240 0.99660 0.99546 1.20779 1.00951 0.91310 1.05736 1.16802 0.81366 0.89050 1.00548 1.91487 1.54077 1.78511 1.86969 1.44845 1.08678 1.06835 1.55093 1.21965 0.82835 1.06862 0.93096 1.23446 1.04215 0.96710 0.95483 1.23466 1.04414 0.92955 1.00307 1.20888 0.91710 0.97932 0.98144 1.20735 1.00600 0.90409 1.12255 1.18834 0.88272 0.87684 0.95770 1.84035 1.19692 1.25674 1.75308 1.21427 0.78413 0.94993 1.51933 0.88628 1.25393 1.00829 0.94171 0.96093 1.70055 1.36733 0.97821 1.43062 0.85732 0.79863 0.78245 0.79365 1.19257 1.20083 1.19267 0.93411 0.88919 0.93174 0.84946 0.85475 0.84604 0.84419 0.84471 0.86541 0.87749 0.87747 0.86883 0.86580 0.84268 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.81 101.05 0.99 1.45 16 2 O -0.30 -6.54 10.28 -34.21 -0.35 -6.89 16 3 C 0.05 1.18 6.70 -39.11 -0.26 0.92 16 4 C -0.11 -2.19 8.66 -39.08 -0.34 -2.53 16 5 C -0.12 -2.18 5.86 -104.94 -0.62 -2.79 16 6 C 0.38 6.56 7.55 -154.52 -1.17 5.39 16 7 N -0.50 -9.27 10.97 -8.68 -0.10 -9.36 16 8 C 0.02 0.40 7.20 -84.66 -0.61 -0.21 16 9 C 0.07 1.00 6.64 -83.92 -0.56 0.44 16 10 C -0.12 -1.24 9.17 -39.50 -0.36 -1.60 16 11 C -0.09 -0.82 10.02 -39.52 -0.40 -1.22 16 12 C -0.17 -1.79 9.99 -39.54 -0.40 -2.18 16 13 C 0.14 2.09 7.34 -39.05 -0.29 1.80 16 14 F -0.13 -2.06 17.27 2.25 0.04 -2.02 16 15 N -0.47 -6.62 3.14 -104.65 -0.33 -6.95 16 16 C 0.06 0.59 4.45 -67.93 -0.30 0.29 16 17 C -0.16 -1.53 9.85 -26.69 -0.26 -1.79 16 18 C -0.17 -1.34 9.32 -26.69 -0.25 -1.59 16 19 C -0.07 -1.13 8.77 -39.21 -0.34 -1.48 16 20 C -0.22 -4.36 9.15 -39.48 -0.36 -4.72 16 21 C 0.15 3.54 6.67 -38.84 -0.26 3.29 16 22 O -0.15 -4.04 9.53 -14.30 -0.14 -4.18 16 23 C -0.39 -10.29 9.48 30.88 0.29 -10.00 16 24 H 0.10 2.24 5.19 -52.49 -0.27 1.97 16 25 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 26 N -0.84 -23.79 13.67 55.48 0.76 -23.03 16 27 Si 0.94 19.18 29.55 -169.99 -5.02 14.16 16 28 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 29 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 30 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 31 H 0.05 0.69 7.67 -51.93 -0.40 0.29 16 32 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.05 0.74 7.65 -51.93 -0.40 0.34 16 34 H 0.13 2.41 6.13 -52.49 -0.32 2.09 16 35 H 0.13 1.01 6.59 -52.49 -0.35 0.66 16 36 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.14 1.30 6.92 -51.93 -0.36 0.94 16 39 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.10 0.82 6.61 -51.93 -0.34 0.48 16 42 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.12 1.59 4.46 -52.48 -0.23 1.36 16 44 H 0.14 2.63 5.62 -52.49 -0.30 2.34 16 45 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 381.68 15.07 5.75 5.75 Total: -1.00 -32.74 381.68 -9.60 -42.34 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -4.64 Total: 5.70 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -5.58 Total: -15.52 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.33 Total: -39.35 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: -0.49 Total: -11.07 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.02 Total: 14.16 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.74 -9.60 -42.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069836284.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.162 kcal (2) G-P(sol) polarization free energy of solvation -32.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds