Wall clock time and date at job start Tue Mar 31 2020 05:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 120.00031 * 2 1 4 4 H 1.48505 * 109.46983 * 269.99471 * 3 2 1 5 5 H 1.48494 * 109.47216 * 29.99906 * 3 2 1 6 6 H 1.48507 * 109.46905 * 149.99918 * 3 2 1 7 7 C 1.37876 * 119.99621 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00024 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00412 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47098 * 179.97438 * 9 7 2 11 11 O 1.42906 * 109.46864 * 179.97438 * 10 9 7 12 12 C 1.35973 * 117.00135 * 180.02562 * 11 10 9 13 13 C 1.38791 * 120.49706 * 0.25965 * 12 11 10 14 14 C 1.38786 * 118.45046 * 180.24400 * 13 12 11 15 15 C 1.38086 * 119.36104 * 359.49882 * 14 13 12 16 16 N 1.31962 * 120.95146 * 0.26039 * 15 14 13 17 17 C 1.32288 * 121.69209 * 359.97438 * 16 15 14 18 18 N 1.39472 * 119.73280 * 179.97438 * 17 16 15 19 19 C 1.34779 * 119.99462 * 359.97438 * 18 17 16 20 20 O 1.21654 * 120.00506 * 0.02562 * 19 18 17 21 21 C 1.46966 * 119.99559 * 180.02562 * 19 18 17 22 22 C 1.33709 * 124.65656 * 179.72176 * 21 19 18 23 23 C 1.40421 * 115.56563 * 179.85726 * 22 21 19 24 24 C 1.41569 * 128.84966 * 180.14648 * 23 22 21 25 25 C 1.35918 * 120.49620 * 180.28434 * 24 23 22 26 26 C 1.38971 * 120.69039 * 0.02562 * 25 24 23 27 27 C 1.37393 * 120.19189 * 0.02562 * 26 25 24 28 28 C 1.39891 * 120.17829 * 359.97438 * 27 26 25 29 29 S 1.75481 * 124.65805 * 0.02894 * 21 19 18 30 30 H 0.96999 * 119.99505 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.46766 * 60.00143 * 9 7 2 32 32 H 1.09005 * 109.46703 * 300.00622 * 9 7 2 33 33 H 1.09000 * 109.47187 * 60.00411 * 10 9 7 34 34 H 1.08991 * 109.47335 * 300.00136 * 10 9 7 35 35 H 1.08001 * 120.77366 * 0.02562 * 13 12 11 36 36 H 1.08002 * 120.32370 * 179.78408 * 14 13 12 37 37 H 1.07995 * 119.52365 * 180.23510 * 15 14 13 38 38 H 0.96997 * 119.99893 * 180.02562 * 18 17 16 39 39 H 1.07994 * 122.21743 * 0.02562 * 22 21 19 40 40 H 1.08000 * 119.75218 * 0.29360 * 24 23 22 41 41 H 1.07998 * 119.65251 * 180.02562 * 25 24 23 42 42 H 1.08005 * 119.90312 * 180.02562 * 26 25 24 43 43 H 1.08003 * 119.91345 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 8 1.5306 -4.8997 -0.0012 12 6 2.2711 -6.0401 -0.0017 13 6 3.6577 -5.9796 0.0027 14 6 4.3715 -7.1698 -0.0031 15 6 3.6876 -8.3694 -0.0026 16 7 2.3683 -8.3985 -0.0017 17 6 1.6487 -7.2885 -0.0008 18 7 0.2562 -7.3669 -0.0004 19 6 -0.3509 -8.5703 -0.0015 20 8 0.3156 -9.5879 -0.0023 21 6 -1.8183 -8.6529 -0.0017 22 6 -2.5155 -9.7938 -0.0080 23 6 -3.9124 -9.6503 -0.0038 24 6 -4.9085 -10.6563 -0.0057 25 6 -6.2260 -10.3224 -0.0066 26 6 -6.6200 -8.9897 -0.0062 27 6 -5.6771 -7.9904 -0.0055 28 6 -4.3149 -8.3089 -0.0045 29 16 -2.8958 -7.2679 -0.0013 30 1 -0.4849 0.8401 -0.0004 31 1 0.6240 -2.5567 -0.8903 32 1 0.6246 -2.5571 0.8897 33 1 2.8725 -3.6048 0.8877 34 1 2.8712 -3.6040 -0.8922 35 1 4.1693 -5.0284 0.0070 36 1 5.4515 -7.1580 -0.0035 37 1 4.2404 -9.2972 -0.0033 38 1 -0.2753 -6.5555 -0.0002 39 1 -2.0362 -10.7615 -0.0132 40 1 -4.6193 -11.6968 -0.0062 41 1 -6.9745 -11.1009 -0.0076 42 1 -7.6705 -8.7388 -0.0065 43 1 -5.9883 -6.9562 -0.0048 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069870535.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:40 Heat of formation + Delta-G solvation = 18.385902 kcal Electronic energy + Delta-G solvation = -28469.490089 eV Core-core repulsion = 24378.812372 eV Total energy + Delta-G solvation = -4090.677717 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 368.098 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.97420 -40.05610 -39.20185 -37.81459 -35.54973 -34.87425 -33.48494 -31.73724 -31.38705 -30.79275 -29.94345 -28.93600 -25.54624 -25.17766 -23.83249 -23.24096 -22.75503 -21.56199 -20.77105 -20.15623 -18.84282 -18.23866 -17.53438 -17.18118 -16.21237 -16.13788 -15.88307 -15.83836 -15.58895 -15.17006 -14.92009 -14.79323 -14.58097 -14.14582 -14.06801 -13.96250 -13.93064 -13.45693 -13.16363 -12.86477 -12.41643 -12.14219 -12.04127 -11.96026 -11.59874 -11.54806 -11.08410 -11.00307 -10.95973 -10.81606 -10.69262 -10.48264 -10.07019 -10.06343 -9.79352 -9.42924 -9.28150 -9.15659 -8.86967 -8.52675 -8.05409 -7.72650 -6.18291 -4.23318 0.00235 0.90256 1.12715 1.15338 1.40524 1.58326 1.75492 2.70315 2.99783 3.22243 3.28152 3.30441 3.39143 3.48970 3.97211 4.16222 4.33247 4.39300 4.55872 4.61659 4.77379 4.90418 4.91206 4.98304 5.04140 5.18580 5.19864 5.30623 5.42294 5.43443 5.54457 5.62162 5.83228 5.88262 5.94301 6.00198 6.02938 6.10889 6.13950 6.26427 6.47557 6.51832 6.56173 7.10450 7.32342 7.51948 7.60880 7.82168 7.93666 8.13567 8.22123 8.81779 9.41611 10.93112 Molecular weight = 368.10amu Principal moments of inertia in cm(-1) A = 0.008084 B = 0.002470 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3462.905528 B =11331.511770 C =14773.967953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.026 3.974 10 C 0.066 3.934 11 O -0.316 6.316 12 C 0.071 3.929 13 C -0.147 4.147 14 C -0.156 4.156 15 C 0.075 3.925 16 N -0.443 5.443 17 C 0.327 3.673 18 N -0.645 5.645 19 C 0.580 3.420 20 O -0.465 6.465 21 C -0.223 4.223 22 C -0.041 4.041 23 C -0.088 4.088 24 C -0.067 4.067 25 C -0.124 4.124 26 C -0.093 4.093 27 C -0.086 4.086 28 C -0.128 4.128 29 S 0.140 5.860 30 H 0.264 0.736 31 H 0.029 0.971 32 H 0.029 0.971 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.147 0.853 36 H 0.136 0.864 37 H 0.158 0.842 38 H 0.423 0.577 39 H 0.156 0.844 40 H 0.130 0.870 41 H 0.129 0.871 42 H 0.132 0.868 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.704 -20.249 -0.014 21.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.011 4.011 10 C -0.008 4.008 11 O -0.229 6.229 12 C 0.019 3.981 13 C -0.174 4.174 14 C -0.177 4.177 15 C -0.081 4.081 16 N -0.158 5.158 17 C 0.094 3.906 18 N -0.293 5.293 19 C 0.365 3.635 20 O -0.336 6.336 21 C -0.342 4.342 22 C -0.073 4.073 23 C -0.096 4.096 24 C -0.087 4.087 25 C -0.144 4.144 26 C -0.114 4.114 27 C -0.109 4.109 28 C -0.245 4.245 29 S 0.408 5.592 30 H 0.074 0.926 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.164 0.836 36 H 0.154 0.846 37 H 0.176 0.824 38 H 0.261 0.739 39 H 0.174 0.826 40 H 0.148 0.852 41 H 0.147 0.853 42 H 0.150 0.850 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.741 -20.026 -0.006 21.469 hybrid contribution 0.640 0.909 -0.011 1.112 sum -7.100 -19.116 -0.017 20.392 Atomic orbital electron populations 1.69968 1.06092 1.27078 1.49471 1.24980 0.94918 0.99404 0.94797 0.86485 0.79747 0.82886 0.78268 1.20457 1.21007 1.19750 1.20938 0.93051 0.90099 1.52555 0.92334 1.19135 0.94136 0.88880 0.98951 1.23422 0.97293 0.80204 0.99910 1.86112 1.36312 1.12955 1.87474 1.19580 0.91195 0.87034 1.00263 1.21622 0.92107 1.00467 1.03168 1.21920 1.01279 0.92483 1.02067 1.22422 0.88649 0.97989 0.99073 1.67595 1.08008 1.26825 1.13360 1.17677 0.84217 0.87186 1.01483 1.43214 1.04256 1.09746 1.72059 1.17120 0.85206 0.83677 0.77477 1.90912 1.64129 1.33717 1.44840 1.23656 0.97017 0.98264 1.15247 1.20215 0.91573 0.99299 0.96233 1.18221 0.93040 0.92829 1.05516 1.20834 0.91913 0.98338 0.97643 1.20723 0.95874 0.96666 1.01144 1.21144 0.99457 0.92530 0.98306 1.20554 0.89434 1.00277 1.00588 1.23061 0.98267 0.96524 1.06658 1.84574 0.93345 1.05508 1.75823 0.92634 0.95308 0.95294 0.92853 0.92839 0.83561 0.84626 0.82442 0.73922 0.82636 0.85214 0.85276 0.84971 0.85040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.51 13.29 55.43 0.74 -24.78 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 7 C -0.53 -14.08 9.11 -34.44 -0.31 -14.40 16 8 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.03 0.64 5.34 -27.88 -0.15 0.49 16 10 C 0.07 1.29 4.70 37.16 0.17 1.47 16 11 O -0.32 -5.91 9.38 -19.66 -0.18 -6.10 16 12 C 0.07 1.20 6.72 -38.91 -0.26 0.94 16 13 C -0.15 -2.13 9.14 -39.17 -0.36 -2.49 16 14 C -0.16 -1.92 10.10 -39.43 -0.40 -2.32 16 15 C 0.08 1.02 11.17 -17.55 -0.20 0.82 16 16 N -0.44 -7.48 7.87 -12.24 -0.10 -7.58 16 17 C 0.33 5.59 7.44 -154.52 -1.15 4.44 16 18 N -0.65 -10.33 5.38 -12.40 -0.07 -10.40 16 19 C 0.58 9.18 7.76 -12.72 -0.10 9.08 16 20 O -0.47 -8.44 14.97 5.23 0.08 -8.36 16 21 C -0.22 -2.96 6.32 -37.64 -0.24 -3.20 16 22 C -0.04 -0.48 9.79 -40.35 -0.40 -0.87 16 23 C -0.09 -0.94 5.87 -107.13 -0.63 -1.57 16 24 C -0.07 -0.55 10.03 -39.14 -0.39 -0.94 16 25 C -0.12 -0.86 9.94 -40.14 -0.40 -1.26 16 26 C -0.09 -0.66 10.03 -39.62 -0.40 -1.06 16 27 C -0.09 -0.77 10.07 -39.27 -0.40 -1.17 16 28 C -0.13 -1.42 6.50 -38.29 -0.25 -1.66 16 29 S 0.14 1.68 22.26 -107.50 -2.39 -0.71 16 30 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.05 1.00 7.68 -51.93 -0.40 0.60 16 34 H 0.05 1.00 7.71 -51.93 -0.40 0.60 16 35 H 0.15 1.94 6.44 -52.49 -0.34 1.61 16 36 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.16 1.63 8.06 -52.49 -0.42 1.20 16 38 H 0.42 6.35 7.09 -40.82 -0.29 6.06 16 39 H 0.16 1.65 7.96 -52.49 -0.42 1.23 16 40 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 42 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 43 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 LS Contribution 387.06 15.07 5.83 5.83 Total: -1.00 -32.62 387.06 -11.82 -44.45 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -4.77 Total: 4.11 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -5.94 Total: -12.10 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: 0.57 Total: -42.75 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.11 Total: -14.45 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.39 Total: -0.71 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.62 -11.82 -44.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069870535.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.832 kcal (2) G-P(sol) polarization free energy of solvation -32.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds