Wall clock time and date at job start Tue Mar 31 2020 06:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46899 * 111.00296 * 2 1 4 4 C 1.46907 * 111.00081 * 123.95697 * 2 1 3 5 5 C 1.52996 * 109.47226 * 169.99925 * 4 2 1 6 6 C 1.53008 * 109.47135 * 180.02562 * 5 4 2 7 7 N 1.46496 * 109.46986 * 179.97438 * 6 5 4 8 8 C 1.34774 * 119.99860 * 179.97438 * 7 6 5 9 9 O 1.21558 * 119.99922 * 0.02562 * 8 7 6 10 10 C 1.47841 * 120.00158 * 179.97438 * 8 7 6 11 11 C 1.39575 * 120.14653 * 180.02562 * 10 8 7 12 12 C 1.37960 * 119.85869 * 180.02562 * 11 10 8 13 13 C 1.38364 * 120.14068 * 0.02562 * 12 11 10 14 14 S 1.76193 * 119.85355 * 179.97438 * 13 12 11 15 15 O 1.42105 * 104.27847 * 206.07375 * 14 13 12 16 16 O 1.42101 * 104.27778 * 333.93045 * 14 13 12 17 17 C 1.81397 * 104.44909 * 90.00208 * 14 13 12 18 18 C 1.53009 * 109.47235 * 179.97438 * 17 14 13 19 19 C 1.50697 * 109.46948 * 179.97438 * 18 17 14 20 20 H 1.07997 * 120.00322 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99943 * 179.97438 * 19 18 17 22 22 N 1.31518 * 119.99809 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00266 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47023 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47077 * 120.00165 * 23 21 19 26 26 H 1.48500 * 109.47130 * 240.00059 * 23 21 19 27 27 C 1.38365 * 120.29353 * 0.23442 * 13 12 11 28 28 C 1.37963 * 120.14041 * 359.48881 * 27 13 12 29 29 H 1.09007 * 109.46730 * 296.04513 * 1 2 3 30 30 H 1.09001 * 109.47188 * 56.04301 * 1 2 3 31 31 H 1.08996 * 109.47604 * 176.04796 * 1 2 3 32 32 H 1.09001 * 109.47388 * 183.95159 * 3 2 1 33 33 H 1.08992 * 109.47017 * 303.95374 * 3 2 1 34 34 H 1.09007 * 109.47179 * 63.95605 * 3 2 1 35 35 H 1.09001 * 109.47161 * 49.99524 * 4 2 1 36 36 H 1.09001 * 109.47036 * 289.99967 * 4 2 1 37 37 H 1.08993 * 109.47396 * 60.00040 * 5 4 2 38 38 H 1.08999 * 109.47040 * 299.99436 * 5 4 2 39 39 H 1.08993 * 109.47050 * 59.99701 * 6 5 4 40 40 H 1.08999 * 109.46592 * 299.99583 * 6 5 4 41 41 H 0.96996 * 119.99982 * 359.97438 * 7 6 5 42 42 H 1.08004 * 120.07456 * 0.02562 * 11 10 8 43 43 H 1.07994 * 119.93412 * 180.02562 * 12 11 10 44 44 H 1.09004 * 109.47032 * 299.99903 * 17 14 13 45 45 H 1.09000 * 109.47124 * 60.00175 * 17 14 13 46 46 H 1.08995 * 109.47216 * 300.00010 * 18 17 14 47 47 H 1.09000 * 109.46805 * 60.00123 * 18 17 14 48 48 H 0.97001 * 119.99986 * 179.97438 * 22 21 19 49 49 H 1.07989 * 119.92960 * 179.74255 * 27 13 12 50 50 H 1.08005 * 120.06989 * 180.25002 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7661 1.1376 5 6 3.5044 -0.9554 0.9703 6 6 4.0526 -1.7539 2.1549 7 7 5.4974 -1.9357 1.9944 8 6 6.1986 -2.6137 2.9244 9 8 5.6322 -3.0747 3.8961 10 6 7.6566 -2.7977 2.7622 11 6 8.3857 -3.4998 3.7233 12 6 9.7460 -3.6675 3.5662 13 6 10.3877 -3.1411 2.4592 14 16 12.1255 -3.3592 2.2666 15 8 12.5306 -2.2567 1.4668 16 8 12.6080 -3.5180 3.5937 17 6 12.2870 -4.9107 1.3407 18 6 13.7685 -5.2131 1.1066 19 6 13.9026 -6.5024 0.3380 20 1 13.0196 -7.0509 0.0452 21 6 15.1527 -6.9811 0.0075 22 7 16.2280 -6.3128 0.3635 23 14 15.3191 -8.5788 -0.9460 24 1 13.9694 -9.1326 -1.2231 25 1 16.0211 -8.3191 -2.2285 26 1 16.0989 -9.5551 -0.1436 27 6 9.6718 -2.4394 1.5055 28 6 8.3100 -2.2695 1.6478 29 1 -0.3633 0.4513 0.9234 30 1 -0.3633 0.5740 -0.8524 31 1 -0.3634 -1.0252 -0.0708 32 1 3.0828 1.3432 -0.0708 33 1 1.5899 1.9163 -0.8524 34 1 1.7045 1.8723 0.9234 35 1 1.5089 -1.7407 1.1756 36 1 1.7975 -0.2249 2.0628 37 1 3.9909 0.0191 0.9323 38 1 3.7023 -1.4967 0.0452 39 1 3.5661 -2.7284 2.1924 40 1 3.8547 -1.2130 3.0802 41 1 5.9493 -1.5682 1.2188 42 1 7.8860 -3.9109 4.5880 43 1 10.3113 -4.2109 4.3089 44 1 11.8356 -5.7227 1.9108 45 1 11.7800 -4.8152 0.3805 46 1 14.2194 -4.4011 0.5364 47 1 14.2759 -5.3084 2.0666 48 1 17.1075 -6.6497 0.1313 49 1 10.1793 -2.0274 0.6459 50 1 7.7516 -1.7250 0.9006 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069896459.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:26 Heat of formation + Delta-G solvation = -84.387045 kcal Electronic energy + Delta-G solvation = -29468.611877 eV Core-core repulsion = 25202.001766 eV Total energy + Delta-G solvation = -4266.610112 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 368.160 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.58188 -38.76451 -38.21698 -36.67931 -35.70942 -35.51315 -33.94968 -32.71020 -31.43030 -31.22022 -31.12300 -28.16811 -27.02597 -25.68263 -24.58208 -23.25281 -22.68117 -21.73594 -21.57064 -20.74743 -18.87034 -18.37717 -17.43966 -16.85724 -16.56929 -16.48609 -15.92706 -15.60671 -15.59751 -15.35782 -15.22534 -15.11070 -14.68368 -14.59164 -14.56379 -14.26976 -13.78720 -13.47094 -13.22903 -13.07776 -12.98577 -12.86705 -12.55936 -12.50989 -12.33660 -12.02754 -11.95851 -11.81298 -11.65848 -11.64130 -11.41951 -11.31998 -11.12192 -11.00735 -10.83176 -10.44294 -10.42766 -10.31730 -9.83497 -9.66404 -9.47863 -9.31569 -9.15958 -8.97354 -8.53695 -6.15848 -4.21704 0.11852 0.53967 1.04863 2.36837 2.60468 3.23961 3.25424 3.31648 3.34760 3.36970 3.42033 4.21295 4.23687 4.26543 4.30186 4.36158 4.44672 4.49340 4.58491 4.63596 4.70053 4.80203 4.88096 4.98070 4.98642 5.03548 5.10760 5.14283 5.19353 5.19999 5.31446 5.32613 5.35589 5.51903 5.57615 5.59027 5.63264 5.68598 5.76330 5.87967 5.90801 5.96793 6.39275 6.39935 6.40581 6.49995 6.99544 7.25466 7.30594 7.74241 7.77336 8.12301 8.81985 9.43495 10.95068 Molecular weight = 368.16amu Principal moments of inertia in cm(-1) A = 0.014134 B = 0.001529 C = 0.001470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.518637 B =18309.331454 C =19044.702940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.548 5.548 3 C 0.019 3.981 4 C 0.057 3.943 5 C -0.131 4.131 6 C 0.120 3.880 7 N -0.726 5.726 8 C 0.558 3.442 9 O -0.530 6.530 10 C -0.095 4.095 11 C -0.082 4.082 12 C -0.031 4.031 13 C -0.631 4.631 14 S 2.470 3.530 15 O -0.943 6.943 16 O -0.942 6.942 17 C -0.562 4.562 18 C 0.025 3.975 19 C -0.521 4.521 20 H 0.063 0.937 21 C 0.059 3.941 22 N -0.889 5.889 23 Si 0.900 3.100 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.282 1.282 27 C -0.032 4.032 28 C -0.110 4.110 29 H 0.026 0.974 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.026 0.974 35 H 0.079 0.921 36 H 0.038 0.962 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.403 0.597 42 H 0.144 0.856 43 H 0.151 0.849 44 H 0.125 0.875 45 H 0.125 0.875 46 H 0.037 0.963 47 H 0.037 0.963 48 H 0.265 0.735 49 H 0.150 0.850 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.012 13.023 0.443 31.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.272 5.272 3 C -0.129 4.129 4 C -0.071 4.071 5 C -0.169 4.169 6 C -0.004 4.004 7 N -0.378 5.378 8 C 0.345 3.655 9 O -0.407 6.407 10 C -0.098 4.098 11 C -0.101 4.101 12 C -0.049 4.049 13 C -0.714 4.714 14 S 2.652 3.348 15 O -0.940 6.940 16 O -0.939 6.939 17 C -0.696 4.696 18 C -0.014 4.014 19 C -0.561 4.561 20 H 0.081 0.919 21 C -0.144 4.144 22 N -0.527 5.527 23 Si 0.727 3.273 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.050 4.050 28 C -0.130 4.130 29 H 0.044 0.956 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.045 0.955 35 H 0.098 0.902 36 H 0.057 0.943 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.238 0.762 42 H 0.162 0.838 43 H 0.169 0.831 44 H 0.144 0.856 45 H 0.143 0.857 46 H 0.055 0.945 47 H 0.055 0.945 48 H 0.075 0.925 49 H 0.168 0.832 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -28.548 13.088 1.046 31.423 hybrid contribution -0.735 -0.596 -0.404 1.029 sum -29.283 12.492 0.642 31.843 Atomic orbital electron populations 1.22394 0.86930 1.02499 1.00645 1.61959 1.08138 1.14132 1.42966 1.22472 1.01197 0.88619 1.00641 1.22022 0.94708 0.98809 0.91603 1.21808 0.95508 1.00954 0.98597 1.21318 0.79686 1.00756 0.98613 1.45883 1.09134 1.57017 1.25812 1.18302 0.86678 0.77980 0.82506 1.90793 1.71178 1.48681 1.30082 1.20157 0.92876 1.00148 0.96578 1.21392 0.93706 0.96499 0.98521 1.21056 0.94302 0.94515 0.95056 1.31358 1.28007 1.09286 1.02784 1.06531 0.73236 0.78804 0.76193 1.93529 1.79608 1.49957 1.70930 1.93534 1.77478 1.87390 1.35540 1.30195 1.10922 1.15928 1.12515 1.19053 0.83795 0.99357 0.99148 1.21027 0.92691 1.06312 1.36054 0.91850 1.25058 0.95781 0.97651 0.95894 1.69962 0.98026 1.38838 1.45876 0.86409 0.78271 0.82965 0.79619 1.19627 1.20785 1.20778 1.20963 0.93659 0.93166 0.97234 1.21357 0.95013 0.99664 0.96946 0.95559 0.91180 0.91167 0.90966 0.91258 0.95527 0.90231 0.94343 0.90986 0.90032 0.90999 0.91274 0.76153 0.83780 0.83124 0.85636 0.85672 0.94514 0.94510 0.92527 0.83238 0.84944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.57 60.06 0.57 0.68 16 2 N -0.55 -3.02 5.02 -251.26 -1.26 -4.28 16 3 C 0.02 0.09 9.32 60.06 0.56 0.65 16 4 C 0.06 0.28 4.96 -3.82 -0.02 0.26 16 5 C -0.13 -0.59 5.25 -26.73 -0.14 -0.73 16 6 C 0.12 0.76 5.67 -4.04 -0.02 0.74 16 7 N -0.73 -5.37 5.51 -61.25 -0.34 -5.71 16 8 C 0.56 6.12 7.77 -12.33 -0.10 6.02 16 9 O -0.53 -7.53 16.35 5.32 0.09 -7.44 16 10 C -0.09 -1.04 5.87 -104.97 -0.62 -1.66 16 11 C -0.08 -0.97 9.60 -39.18 -0.38 -1.35 16 12 C -0.03 -0.39 9.45 -39.64 -0.37 -0.76 16 13 C -0.63 -8.57 5.66 -39.49 -0.22 -8.80 16 14 S 2.47 41.61 5.16 -107.50 -0.55 41.06 16 15 O -0.94 -18.07 17.10 -57.54 -0.98 -19.06 16 16 O -0.94 -18.36 17.11 -57.54 -0.98 -19.35 16 17 C -0.56 -9.99 5.92 37.16 0.22 -9.77 16 18 C 0.03 0.61 4.98 -27.88 -0.14 0.48 16 19 C -0.52 -13.92 9.11 -34.44 -0.31 -14.23 16 20 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 21 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 22 N -0.89 -25.78 13.29 55.43 0.74 -25.04 16 23 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 C -0.03 -0.37 9.45 -39.64 -0.37 -0.74 16 28 C -0.11 -1.06 9.54 -39.18 -0.37 -1.43 16 29 H 0.03 0.11 8.14 -51.92 -0.42 -0.31 16 30 H 0.07 0.27 8.12 -51.93 -0.42 -0.15 16 31 H 0.07 0.28 8.12 -51.93 -0.42 -0.14 16 32 H 0.07 0.30 6.47 -51.93 -0.34 -0.03 16 33 H 0.07 0.28 8.12 -51.93 -0.42 -0.14 16 34 H 0.03 0.12 8.14 -51.93 -0.42 -0.30 16 35 H 0.08 0.37 8.06 -51.93 -0.42 -0.05 16 36 H 0.04 0.19 8.12 -51.93 -0.42 -0.23 16 37 H 0.07 0.30 6.55 -51.93 -0.34 -0.04 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.40 1.99 6.51 -40.82 -0.27 1.73 16 42 H 0.14 1.58 7.65 -52.48 -0.40 1.18 16 43 H 0.15 1.74 7.56 -52.49 -0.40 1.34 16 44 H 0.13 1.97 8.14 -51.92 -0.42 1.55 16 45 H 0.12 1.94 8.14 -51.92 -0.42 1.51 16 46 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 47 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 49 H 0.15 1.53 7.55 -52.49 -0.40 1.14 16 50 H 0.13 0.76 6.41 -52.48 -0.34 0.42 16 LS Contribution 426.56 15.07 6.43 6.43 Total: -1.00 -36.29 426.56 -11.63 -47.92 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -7.92 Total: -1.10 kcal Atomic # 6 Polarization: -27.32 SS G_CDS: -1.81 Total: -29.13 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: -0.86 Total: -35.04 kcal Atomic # 8 Polarization: -43.97 SS G_CDS: -1.88 Total: -45.85 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 41.61 SS G_CDS: -0.55 Total: 41.06 kcal Total LS contribution 6.43 Total: 6.43 kcal Total: -36.29 -11.63 -47.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069896459.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.471 kcal (2) G-P(sol) polarization free energy of solvation -36.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds