Wall clock time and date at job start Tue Mar 31 2020 05:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08991 * 109.47164 * 2 1 4 4 C 1.50696 * 109.46954 * 120.00498 * 2 1 3 5 5 H 1.08006 * 119.99681 * 119.99900 * 4 2 1 6 6 C 1.37874 * 120.00003 * 299.99496 * 4 2 1 7 7 N 1.31509 * 120.00162 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00021 * 179.97438 * 6 4 2 9 9 H 1.48492 * 109.47309 * 270.00688 * 8 6 4 10 10 H 1.48504 * 109.46690 * 30.00325 * 8 6 4 11 11 H 1.48495 * 109.47190 * 150.00048 * 8 6 4 12 12 N 1.46903 * 109.46600 * 240.00456 * 2 1 3 13 13 C 1.46897 * 111.00133 * 85.00326 * 12 2 1 14 14 C 1.53000 * 109.47372 * 179.97438 * 13 12 2 15 15 C 1.50695 * 109.47488 * 179.97438 * 14 13 12 16 16 O 1.21278 * 119.99966 * 0.02562 * 15 14 13 17 17 N 1.34779 * 120.00100 * 180.02562 * 15 14 13 18 18 C 1.46494 * 119.99925 * 354.68971 * 17 15 14 19 19 C 1.46502 * 119.99916 * 174.69493 * 17 15 14 20 20 C 1.50701 * 109.47044 * 94.32529 * 19 17 15 21 21 C 1.38242 * 120.00608 * 4.76358 * 20 19 17 22 22 C 1.38226 * 120.00937 * 179.97438 * 21 20 19 23 23 C 1.38255 * 120.01929 * 0.02562 * 22 21 20 24 24 C 1.38195 * 120.01348 * 359.97438 * 23 22 21 25 25 C 1.38305 * 120.00471 * 184.49162 * 20 19 17 26 26 Br 1.89098 * 120.01068 * 0.02562 * 25 20 19 27 27 H 1.09005 * 109.47077 * 59.99175 * 1 2 3 28 28 H 1.09002 * 109.47269 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46881 * 299.99859 * 1 2 3 30 30 H 0.97004 * 120.00029 * 180.02562 * 7 6 4 31 31 H 1.00904 * 110.99840 * 208.95261 * 12 2 1 32 32 H 1.08999 * 109.47192 * 299.99850 * 13 12 2 33 33 H 1.08998 * 109.47373 * 59.99768 * 13 12 2 34 34 H 1.08999 * 109.47282 * 300.00337 * 14 13 12 35 35 H 1.09001 * 109.47110 * 59.99950 * 14 13 12 36 36 H 1.09005 * 109.46932 * 90.00685 * 18 17 15 37 37 H 1.09005 * 109.47319 * 210.00364 * 18 17 15 38 38 H 1.08998 * 109.47702 * 330.00744 * 18 17 15 39 39 H 1.08994 * 109.46901 * 214.32117 * 19 17 15 40 40 H 1.08992 * 109.47066 * 334.32351 * 19 17 15 41 41 H 1.08003 * 119.99408 * 0.02562 * 21 20 19 42 42 H 1.07999 * 119.98580 * 180.02562 * 22 21 20 43 43 H 1.08006 * 119.99143 * 179.97438 * 23 22 21 44 44 H 1.07999 * 120.00489 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4826 7 7 0.9429 0.8295 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3428 -2.1620 4.4116 10 1 3.6293 -1.7587 3.7120 11 1 2.4867 -0.1418 5.1122 12 7 2.0196 -0.6924 -1.1996 13 6 2.0824 0.2227 -2.3469 14 6 2.5961 -0.5326 -3.5743 15 6 2.6599 0.4060 -4.7515 16 8 2.3278 1.5651 -4.6215 17 7 3.0861 -0.0427 -5.9488 18 6 3.5968 -1.4095 -6.0793 19 6 3.0387 0.8365 -7.1197 20 6 4.3711 1.5202 -7.2888 21 6 5.4272 1.1908 -6.4598 22 6 6.6495 1.8174 -6.6152 23 6 6.8162 2.7741 -7.5993 24 6 5.7609 3.1040 -8.4284 25 6 4.5390 2.4731 -8.2770 26 35 3.0967 2.9191 -9.4157 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.7089 1.1611 3.4845 31 1 2.9173 -1.1205 -1.0289 32 1 1.0871 0.6165 -2.5525 33 1 2.7588 1.0462 -2.1182 34 1 3.5915 -0.9262 -3.3685 35 1 1.9199 -1.3564 -3.8032 36 1 2.7751 -2.0826 -6.3242 37 1 4.3436 -1.4442 -6.8726 38 1 4.0518 -1.7189 -5.1384 39 1 2.8180 0.2460 -8.0088 40 1 2.2606 1.5868 -6.9794 41 1 5.2976 0.4432 -5.6913 42 1 7.4745 1.5595 -5.9677 43 1 7.7713 3.2637 -7.7200 44 1 5.8914 3.8511 -9.1973 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069950892.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:11 Heat of formation + Delta-G solvation = -4.412803 kcal Electronic energy + Delta-G solvation = -24481.454571 eV Core-core repulsion = 20866.007916 eV Total energy + Delta-G solvation = -3615.446655 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 368.084 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.47008 -39.18816 -36.18660 -35.68708 -33.19511 -32.84486 -31.92821 -30.55210 -29.66257 -27.90240 -27.34625 -25.86046 -25.11803 -23.00736 -22.34492 -21.44821 -19.76870 -19.12144 -17.40229 -17.01370 -16.60198 -16.25954 -15.81441 -15.46513 -15.04112 -14.76553 -14.44077 -14.20688 -13.77742 -13.61801 -13.56926 -13.11988 -13.04983 -12.80980 -12.60476 -12.32622 -12.22426 -11.76426 -11.75147 -11.48569 -11.22327 -11.19143 -10.98359 -10.69448 -10.67824 -10.55349 -10.20279 -10.09367 -10.00834 -9.66808 -9.19264 -8.98138 -8.95059 -8.79282 -8.45620 -7.27059 -6.00209 -4.07154 0.75635 0.94906 1.30352 2.64284 2.77669 3.27585 3.30739 3.37002 3.39411 4.32924 4.39963 4.47574 4.53566 4.65125 4.84849 4.95221 4.98614 5.07617 5.15117 5.24213 5.26893 5.31209 5.35054 5.43995 5.46200 5.60182 5.79104 5.81825 5.87377 5.94118 6.09042 6.32336 6.41471 6.46405 6.58982 6.94422 7.18646 7.19453 7.27732 7.54017 7.79275 7.92945 8.15637 8.30280 8.39721 8.68514 9.03385 9.58583 11.06148 Molecular weight = 368.08amu Principal moments of inertia in cm(-1) A = 0.018757 B = 0.001903 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.380200 B =14707.802425 C =15145.742086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.212 3.788 3 H 0.002 0.998 4 C -0.519 4.519 5 H 0.060 0.940 6 C 0.061 3.939 7 N -0.889 5.889 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.275 1.275 11 H -0.287 1.287 12 N -0.690 5.690 13 C 0.075 3.925 14 C -0.134 4.134 15 C 0.515 3.485 16 O -0.526 6.526 17 N -0.624 5.624 18 C 0.075 3.925 19 C 0.149 3.851 20 C -0.067 4.067 21 C -0.103 4.103 22 C -0.101 4.101 23 C -0.120 4.120 24 C -0.089 4.089 25 C -0.089 4.089 26 Br -0.051 7.051 27 H 0.005 0.995 28 H 0.031 0.969 29 H 0.080 0.920 30 H 0.261 0.739 31 H 0.328 0.672 32 H 0.070 0.930 33 H 0.026 0.974 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.131 0.869 42 H 0.129 0.871 43 H 0.130 0.870 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.643 0.338 -28.772 30.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.104 3.896 3 H 0.020 0.980 4 C -0.557 4.557 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.200 1.200 11 H -0.213 1.213 12 N -0.321 5.321 13 C -0.055 4.055 14 C -0.174 4.174 15 C 0.304 3.696 16 O -0.401 6.401 17 N -0.359 5.359 18 C -0.068 4.068 19 C 0.026 3.974 20 C -0.070 4.070 21 C -0.122 4.122 22 C -0.119 4.119 23 C -0.139 4.139 24 C -0.109 4.109 25 C -0.169 4.169 26 Br 0.035 6.965 27 H 0.024 0.976 28 H 0.050 0.950 29 H 0.099 0.901 30 H 0.071 0.929 31 H 0.144 0.856 32 H 0.089 0.911 33 H 0.044 0.956 34 H 0.107 0.893 35 H 0.119 0.881 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.112 0.888 40 H 0.124 0.876 41 H 0.149 0.851 42 H 0.147 0.853 43 H 0.148 0.852 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 9.184 1.007 -29.127 30.557 hybrid contribution 1.484 -0.016 1.262 1.948 sum 10.667 0.991 -27.865 29.853 Atomic orbital electron populations 1.21716 0.97865 0.99262 0.99463 1.19094 0.92666 0.92426 0.85366 0.98032 1.21253 1.31529 1.12471 0.90462 0.92225 1.24934 0.95099 0.94995 0.99063 1.69906 1.36579 1.22837 1.23450 0.86517 0.79150 0.79309 0.82504 1.20621 1.19974 1.21296 1.60759 1.31771 1.33344 1.06243 1.21621 1.00712 0.93602 0.89603 1.21717 1.03474 0.98900 0.93305 1.21054 0.75884 0.88964 0.83720 1.90725 1.47348 1.18466 1.83524 1.47884 1.65180 1.14053 1.08743 1.21888 0.99473 0.82147 1.03307 1.20451 0.94221 0.94164 0.88549 1.20212 0.97051 0.95592 0.94158 1.21069 0.92031 1.00327 0.98735 1.21334 0.97515 0.95650 0.97420 1.21169 0.98828 0.98185 0.95724 1.21080 0.91319 0.98902 0.99578 1.21555 0.94069 1.02044 0.99245 1.96720 1.43569 1.93087 1.63112 0.97618 0.95004 0.90114 0.92910 0.85560 0.91109 0.95584 0.89337 0.88139 0.92062 0.91099 0.90333 0.88778 0.87619 0.85122 0.85300 0.85166 0.85005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.21 9.19 37.16 0.34 -2.87 16 2 C 0.21 5.51 2.60 -68.86 -0.18 5.33 16 3 H 0.00 0.06 7.80 -51.93 -0.40 -0.35 16 4 C -0.52 -14.33 8.59 -34.44 -0.30 -14.62 16 5 H 0.06 1.60 7.62 -52.48 -0.40 1.20 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.87 11.32 55.43 0.63 -25.24 16 8 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 12 N -0.69 -14.73 6.30 -107.96 -0.68 -15.41 16 13 C 0.08 1.42 4.77 -3.83 -0.02 1.40 16 14 C -0.13 -1.82 4.64 -27.89 -0.13 -1.95 16 15 C 0.52 7.28 7.56 -10.99 -0.08 7.19 16 16 O -0.53 -9.72 15.55 5.56 0.09 -9.63 16 17 N -0.62 -6.50 1.74 -182.96 -0.32 -6.82 16 18 C 0.07 0.50 9.09 59.84 0.54 1.04 16 19 C 0.15 1.54 4.69 -5.19 -0.02 1.51 16 20 C -0.07 -0.70 5.88 -104.60 -0.61 -1.32 16 21 C -0.10 -1.03 9.11 -39.58 -0.36 -1.39 16 22 C -0.10 -0.87 10.05 -39.58 -0.40 -1.27 16 23 C -0.12 -0.96 10.05 -39.59 -0.40 -1.36 16 24 C -0.09 -0.77 9.79 -39.56 -0.39 -1.16 16 25 C -0.09 -0.89 6.22 -39.52 -0.25 -1.14 16 26 Br -0.05 -0.47 32.43 -68.01 -2.21 -2.67 16 27 H 0.00 0.12 7.45 -51.93 -0.39 -0.27 16 28 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.08 2.25 6.07 -51.93 -0.32 1.94 16 30 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.33 6.60 8.22 -39.29 -0.32 6.27 16 32 H 0.07 1.47 7.39 -51.93 -0.38 1.08 16 33 H 0.03 0.54 8.01 -51.93 -0.42 0.12 16 34 H 0.09 1.01 7.24 -51.93 -0.38 0.63 16 35 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.38 8.02 -51.93 -0.42 -0.04 16 38 H 0.08 0.47 6.48 -51.93 -0.34 0.14 16 39 H 0.09 0.76 8.10 -51.93 -0.42 0.34 16 40 H 0.11 1.31 7.13 -51.93 -0.37 0.94 16 41 H 0.13 1.26 6.10 -52.48 -0.32 0.94 16 42 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.13 0.72 8.06 -52.48 -0.42 0.29 16 44 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 LS Contribution 378.28 15.07 5.70 5.70 Total: -1.00 -32.47 378.28 -10.70 -43.17 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -6.54 Total: 3.57 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -2.34 Total: -8.98 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: -0.37 Total: -47.47 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.09 Total: -9.63 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 35 Polarization: -0.47 SS G_CDS: -2.21 Total: -2.67 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.47 -10.70 -43.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069950892.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.758 kcal (2) G-P(sol) polarization free energy of solvation -32.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds