Wall clock time and date at job start Tue Mar 31 2020 05:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39869 * 125.89727 * 2 1 4 4 C 1.35315 * 107.92449 * 179.71728 * 3 2 1 5 5 C 1.50700 * 126.13362 * 180.26256 * 4 3 2 6 6 N 1.34951 * 107.74085 * 0.42744 * 4 3 2 7 7 C 1.46500 * 126.03948 * 179.84216 * 6 4 3 8 8 C 1.53003 * 109.46991 * 274.76730 * 7 6 4 9 9 H 1.08995 * 109.58604 * 61.82615 * 8 7 6 10 10 C 1.53190 * 109.58137 * 301.39870 * 8 7 6 11 11 C 1.53045 * 109.30994 * 185.57764 * 10 8 7 12 12 C 1.53040 * 109.53757 * 61.37020 * 11 10 8 13 13 C 1.53631 * 109.24093 * 298.51020 * 12 11 10 14 14 N 1.46926 * 109.58509 * 182.11440 * 8 7 6 15 15 C 1.34775 * 120.63104 * 353.36594 * 14 8 7 16 16 O 1.21551 * 120.00092 * 358.62335 * 15 14 8 17 17 C 1.47893 * 119.99828 * 178.61949 * 15 14 8 18 18 C 1.39911 * 120.02324 * 32.66953 * 17 15 14 19 19 C 1.38331 * 120.35628 * 179.97438 * 18 17 15 20 20 C 1.37758 * 120.41338 * 0.02562 * 19 18 17 21 21 C 1.40744 * 120.03804 * 0.04478 * 20 19 18 22 22 C 1.41437 * 120.18005 * 179.97438 * 21 20 19 23 23 H 1.08001 * 119.99996 * 207.00432 * 22 21 20 24 24 C 1.39933 * 119.99676 * 27.27211 * 22 21 20 25 25 N 1.30824 * 120.00361 * 7.06830 * 24 22 21 26 26 Si 1.86805 * 119.99932 * 187.06524 * 24 22 21 27 27 H 1.48497 * 109.46863 * 0.02562 * 26 24 22 28 28 H 1.48508 * 109.46910 * 120.00051 * 26 24 22 29 29 H 1.48497 * 109.47277 * 240.00098 * 26 24 22 30 30 C 1.38994 * 120.02268 * 212.97252 * 17 15 14 31 31 N 1.30832 * 125.90102 * 179.97438 * 2 1 3 32 32 H 1.08999 * 109.47133 * 269.99831 * 1 2 3 33 33 H 1.08994 * 109.47093 * 30.00263 * 1 2 3 34 34 H 1.09000 * 109.46416 * 149.99741 * 1 2 3 35 35 H 1.08001 * 126.03977 * 359.97438 * 3 2 1 36 36 H 1.08996 * 109.46946 * 275.14075 * 5 4 3 37 37 H 1.08999 * 109.46561 * 35.13662 * 5 4 3 38 38 H 1.08995 * 109.46921 * 155.14036 * 5 4 3 39 39 H 1.08994 * 109.47678 * 154.76243 * 7 6 4 40 40 H 1.09007 * 109.47123 * 34.76408 * 7 6 4 41 41 H 1.09000 * 109.50495 * 305.53168 * 10 8 7 42 42 H 1.08998 * 109.49816 * 65.63211 * 10 8 7 43 43 H 1.08999 * 109.45716 * 181.38802 * 11 10 8 44 44 H 1.08996 * 109.46201 * 301.35947 * 11 10 8 45 45 H 1.09001 * 109.49893 * 58.58344 * 12 11 10 46 46 H 1.09000 * 109.50019 * 178.65021 * 12 11 10 47 47 H 1.09004 * 109.73568 * 295.12210 * 13 12 11 48 48 H 1.08998 * 109.66361 * 174.54952 * 13 12 11 49 49 H 1.07998 * 119.82916 * 359.97438 * 18 17 15 50 50 H 1.08006 * 119.79682 * 180.02562 * 19 18 17 51 51 H 1.07995 * 119.98051 * 180.02562 * 20 19 18 52 52 H 0.96998 * 120.00180 * 179.97438 * 25 24 22 53 53 H 1.07999 * 120.20759 * 0.03451 * 30 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7155 0.0064 5 6 4.8350 1.5990 0.0143 6 7 3.6088 -0.6340 0.0006 7 6 4.7900 -1.5007 0.0012 8 6 5.2771 -1.6996 -1.4355 9 1 5.5668 -0.7383 -1.8595 10 6 4.1563 -2.3185 -2.2766 11 6 4.6919 -2.6432 -3.6731 12 6 5.8297 -3.6606 -3.5610 13 6 6.9730 -3.0525 -2.7344 14 7 6.4311 -2.6091 -1.4427 15 6 6.9855 -3.0242 -0.2866 16 8 6.5470 -2.6264 0.7750 17 6 8.1274 -3.9637 -0.3096 18 6 9.0532 -3.9149 -1.3574 19 6 10.1241 -4.7901 -1.3855 20 6 10.2913 -5.7199 -0.3829 21 6 9.3694 -5.7850 0.6785 22 6 9.5380 -6.7388 1.7092 23 1 8.6798 -7.0993 2.2569 24 6 10.8172 -7.2111 2.0230 25 7 11.8693 -6.6725 1.4620 26 14 11.0229 -8.6106 3.2431 27 1 9.6884 -9.0417 3.7313 28 1 11.6985 -9.7529 2.5767 29 1 11.8453 -8.1501 4.3906 30 6 8.2781 -4.9001 0.7066 31 7 2.2742 -1.0598 0.0005 32 1 -0.3633 0.0000 1.0277 33 1 -0.3633 0.8899 -0.5138 34 1 -0.3632 -0.8900 -0.5139 35 1 1.9923 2.1598 -0.0004 36 1 5.0809 1.8881 -1.0075 37 1 4.6334 2.4920 0.6059 38 1 5.6737 1.0561 0.4500 39 1 4.5315 -2.4669 0.4343 40 1 5.5803 -1.0374 0.5920 41 1 3.8061 -3.2338 -1.7994 42 1 3.3306 -1.6118 -2.3590 43 1 3.8898 -3.0610 -4.2814 44 1 5.0647 -1.7317 -4.1400 45 1 5.4638 -4.5632 -3.0716 46 1 6.1946 -3.9095 -4.5575 47 1 7.3975 -2.2000 -3.2646 48 1 7.7452 -3.8036 -2.5683 49 1 8.9312 -3.1901 -2.1487 50 1 10.8335 -4.7442 -2.1986 51 1 11.1301 -6.3995 -0.4116 52 1 12.7560 -6.9997 1.6798 53 1 7.5629 -4.9450 1.5146 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071865534.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:27 Heat of formation + Delta-G solvation = 67.542591 kcal Electronic energy + Delta-G solvation = -33697.726839 eV Core-core repulsion = 29535.812696 eV Total energy + Delta-G solvation = -4161.914143 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 367.200 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -42.45654 -41.65908 -39.25922 -38.39112 -36.02631 -35.29096 -34.04120 -33.40457 -32.25351 -31.79007 -31.13382 -29.78490 -27.90484 -27.39333 -27.15009 -25.68812 -24.23763 -23.40062 -22.45189 -21.86851 -21.23204 -20.53679 -20.21726 -19.12487 -17.95093 -17.55689 -17.35479 -16.68499 -16.67027 -16.57817 -16.14062 -15.56777 -15.28938 -15.26169 -15.14061 -14.70263 -14.65849 -14.54951 -14.42795 -14.15317 -14.09501 -14.04388 -13.80107 -13.66010 -13.47402 -13.25261 -13.08510 -13.05307 -12.89234 -12.74234 -12.68310 -12.56013 -12.29039 -12.22313 -12.00481 -11.92702 -11.73581 -11.54155 -11.40529 -11.18845 -11.13366 -10.51833 -9.97815 -9.78048 -9.46687 -9.38420 -9.28238 -8.61157 -6.44255 0.42106 0.88581 0.93315 1.36396 1.38356 1.44106 1.50659 1.85666 1.86704 2.09113 2.19433 2.71629 3.35891 3.45787 3.60439 3.73987 3.76215 3.81711 3.89459 3.99772 4.06565 4.13569 4.20311 4.33363 4.40023 4.43606 4.49722 4.55511 4.62294 4.70773 4.73325 4.77814 4.80665 4.83583 4.84087 4.95606 4.96839 4.97723 5.00295 5.03491 5.07721 5.10286 5.13157 5.17277 5.28801 5.36159 5.37235 5.46139 5.50769 5.75374 5.83921 5.98383 6.01277 6.11617 6.17859 6.35287 6.60526 6.86608 6.87459 6.90036 7.07689 8.31977 Molecular weight = 367.20amu Principal moments of inertia in cm(-1) A = 0.013475 B = 0.002335 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.390925 B =11986.993149 C =12904.495797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.056 3.944 3 C -0.284 4.284 4 C 0.076 3.924 5 C -0.092 4.092 6 N -0.375 5.375 7 C 0.152 3.848 8 C 0.140 3.860 9 H 0.094 0.906 10 C -0.114 4.114 11 C -0.111 4.111 12 C -0.132 4.132 13 C 0.064 3.936 14 N -0.593 5.593 15 C 0.564 3.436 16 O -0.578 6.578 17 C -0.118 4.118 18 C -0.198 4.198 19 C -0.110 4.110 20 C -0.158 4.158 21 C 0.069 3.931 22 C -0.496 4.496 23 H 0.066 0.934 24 C 0.033 3.967 25 N -0.829 5.829 26 Si 0.984 3.016 27 H -0.265 1.265 28 H -0.258 1.258 29 H -0.267 1.267 30 C -0.184 4.184 31 N -0.340 5.340 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.067 0.933 35 H 0.169 0.831 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.107 0.893 41 H 0.042 0.958 42 H 0.068 0.932 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.047 0.953 46 H 0.104 0.896 47 H 0.099 0.901 48 H 0.126 0.874 49 H 0.157 0.843 50 H 0.133 0.867 51 H 0.119 0.881 52 H 0.289 0.711 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.071 13.971 -12.124 22.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.110 4.110 3 C -0.313 4.313 4 C -0.052 4.052 5 C -0.150 4.150 6 N -0.159 5.159 7 C 0.031 3.969 8 C 0.036 3.964 9 H 0.112 0.888 10 C -0.153 4.153 11 C -0.149 4.149 12 C -0.170 4.170 13 C -0.056 4.056 14 N -0.325 5.325 15 C 0.356 3.644 16 O -0.460 6.460 17 C -0.121 4.121 18 C -0.217 4.217 19 C -0.128 4.128 20 C -0.178 4.178 21 C 0.067 3.933 22 C -0.526 4.526 23 H 0.085 0.915 24 C -0.180 4.180 25 N -0.456 5.456 26 Si 0.805 3.195 27 H -0.189 1.189 28 H -0.183 1.183 29 H -0.191 1.191 30 C -0.205 4.205 31 N -0.163 5.163 32 H 0.100 0.900 33 H 0.118 0.882 34 H 0.086 0.914 35 H 0.186 0.814 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.125 0.875 41 H 0.061 0.939 42 H 0.086 0.914 43 H 0.094 0.906 44 H 0.100 0.900 45 H 0.066 0.934 46 H 0.123 0.877 47 H 0.117 0.883 48 H 0.143 0.857 49 H 0.174 0.826 50 H 0.151 0.849 51 H 0.137 0.863 52 H 0.100 0.900 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.869 12.786 -11.593 20.947 hybrid contribution 0.164 -0.190 1.267 1.292 sum -11.705 12.596 -10.326 20.057 Atomic orbital electron populations 1.20253 0.84697 1.04058 1.03539 1.22966 0.98377 0.90823 0.98800 1.21399 0.90509 1.00465 1.18884 1.21745 0.98780 0.84482 1.00153 1.20579 0.91582 0.98075 1.04753 1.49066 1.05035 1.04837 1.56952 1.22327 0.83103 0.94571 0.96858 1.21618 0.86171 0.93545 0.95086 0.88795 1.21794 0.96545 1.00175 0.96765 1.21513 0.98412 1.00071 0.94874 1.22013 0.95593 0.98061 1.01295 1.23240 0.98377 1.02329 0.81696 1.48058 1.30723 1.47055 1.06674 1.18856 0.82517 0.79826 0.83234 1.90652 1.64271 1.58767 1.32276 1.19446 0.96770 0.97991 0.97942 1.21310 0.96754 1.04368 0.99253 1.21094 0.97354 0.95895 0.98446 1.21771 1.01336 1.01012 0.93694 1.17901 0.91318 0.91395 0.92695 1.19818 0.94249 1.22003 1.16566 0.91533 1.26663 0.94637 0.98634 0.98115 1.69775 0.99974 1.37358 1.38502 0.85123 0.79129 0.77515 0.77737 1.18910 1.18263 1.19145 1.21094 1.01710 0.98842 0.98814 1.77311 0.87350 1.24474 1.27181 0.90013 0.88186 0.91403 0.81376 0.88317 0.87752 0.92161 0.91461 0.87538 0.93935 0.91387 0.90582 0.90001 0.93428 0.87741 0.88288 0.85712 0.82591 0.84931 0.86286 0.90040 0.90160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.11 10.45 71.24 0.74 -0.37 16 2 C 0.06 1.41 7.22 43.10 0.31 1.72 16 3 C -0.28 -6.32 10.65 21.99 0.23 -6.09 16 4 C 0.08 1.84 6.93 41.40 0.29 2.13 16 5 C -0.09 -1.56 10.17 71.24 0.72 -0.84 16 6 N -0.37 -11.21 2.97 -334.69 -0.99 -12.20 16 7 C 0.15 4.93 4.04 86.38 0.35 5.28 16 8 C 0.14 3.74 3.21 44.98 0.14 3.89 16 9 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 10 C -0.11 -2.85 5.03 30.67 0.15 -2.70 16 11 C -0.11 -2.04 5.88 30.62 0.18 -1.86 16 12 C -0.13 -2.57 6.10 30.82 0.19 -2.39 16 13 C 0.06 1.45 4.92 86.51 0.43 1.87 16 14 N -0.59 -17.61 2.97 -797.50 -2.37 -19.97 16 15 C 0.56 22.22 7.33 86.80 0.64 22.86 16 16 O -0.58 -25.83 12.22 -3.88 -0.05 -25.88 16 17 C -0.12 -5.13 5.52 -20.13 -0.11 -5.25 16 18 C -0.20 -7.32 7.44 22.70 0.17 -7.15 16 19 C -0.11 -4.41 10.01 22.18 0.22 -4.19 16 20 C -0.16 -7.81 8.68 22.77 0.20 -7.61 16 21 C 0.07 3.72 5.58 -21.32 -0.12 3.60 16 22 C -0.50 -27.24 9.08 23.47 0.21 -27.02 16 23 H 0.07 3.64 7.86 -2.91 -0.02 3.61 16 24 C 0.03 1.66 5.33 85.25 0.45 2.11 16 25 N -0.83 -42.31 10.55 21.82 0.23 -42.08 16 26 Si 0.98 38.71 29.57 68.60 2.03 40.74 16 27 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 28 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 29 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 30 C -0.18 -9.47 9.34 23.01 0.21 -9.26 16 31 N -0.34 -10.76 12.10 -47.38 -0.57 -11.34 16 32 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.17 2.67 8.06 -2.91 -0.02 2.65 16 36 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.06 1.19 7.05 -2.39 -0.02 1.17 16 39 H 0.07 2.69 7.09 -2.39 -0.02 2.67 16 40 H 0.11 3.73 5.39 -2.38 -0.01 3.72 16 41 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.07 1.77 7.41 -2.39 -0.02 1.75 16 43 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.10 1.66 8.13 -2.39 -0.02 1.64 16 48 H 0.13 3.23 3.55 -3.79 -0.01 3.22 16 49 H 0.16 4.37 5.30 -2.91 -0.02 4.35 16 50 H 0.13 4.33 8.06 -2.91 -0.02 4.30 16 51 H 0.12 6.14 5.94 -2.91 -0.02 6.12 16 52 H 0.29 13.23 8.30 -92.71 -0.77 12.46 16 53 H 0.08 4.35 7.96 -2.91 -0.02 4.33 16 Total: -1.00 -68.38 414.25 4.81 -63.57 By element: Atomic # 1 Polarization: 37.50 SS G_CDS: 0.91 Total: 38.42 kcal Atomic # 6 Polarization: -36.88 SS G_CDS: 5.62 Total: -31.26 kcal Atomic # 7 Polarization: -81.88 SS G_CDS: -3.70 Total: -85.59 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.05 Total: -25.88 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 2.03 Total: 40.74 kcal Total: -68.38 4.81 -63.57 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071865534.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.110 kcal (2) G-P(sol) polarization free energy of solvation -68.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds