Wall clock time and date at job start Tue Mar 31 2020 05:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38291 * 119.92383 * 2 1 4 4 C 1.38105 * 120.07174 * 180.02562 * 3 2 1 5 5 C 1.38888 * 119.92880 * 359.97438 * 4 3 2 6 6 N 1.39832 * 120.07420 * 180.02562 * 5 4 3 7 7 C 1.46503 * 120.00138 * 187.77189 * 6 5 4 8 8 C 1.50701 * 109.47107 * 265.55069 * 7 6 5 9 9 H 1.07993 * 120.00364 * 0.02562 * 8 7 6 10 10 C 1.37879 * 119.99399 * 179.97438 * 8 7 6 11 11 N 1.31512 * 120.00700 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 119.99426 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47023 * 90.00250 * 12 10 8 14 14 H 1.48508 * 109.46769 * 209.99958 * 12 10 8 15 15 H 1.48498 * 109.47248 * 330.00051 * 12 10 8 16 16 C 1.34781 * 119.99888 * 7.78080 * 6 5 4 17 17 O 1.21712 * 120.00112 * 6.20282 * 16 6 5 18 18 C 1.46743 * 119.99602 * 186.21177 * 16 6 5 19 19 N 1.35987 * 126.66106 * 285.29709 * 18 16 6 20 20 C 1.29860 * 108.79851 * 180.29621 * 19 18 16 21 21 O 1.34154 * 109.90849 * 359.72998 * 20 19 18 22 22 C 1.34898 * 108.24521 * 359.97438 * 21 20 19 23 23 C 1.46596 * 126.81251 * 180.02562 * 22 21 20 24 24 C 1.36445 * 125.35083 * 354.93635 * 23 22 21 25 25 C 1.37576 * 114.42390 * 180.02562 * 24 23 22 26 26 C 1.33836 * 115.20995 * 0.24810 * 25 24 23 27 27 S 1.75821 * 109.98480 * 359.62883 * 26 25 24 28 28 C 1.38891 * 119.85561 * 0.27880 * 5 4 3 29 29 C 1.38114 * 119.92350 * 359.46803 * 28 5 4 30 30 H 1.09001 * 109.46906 * 90.00304 * 1 2 3 31 31 H 1.09003 * 109.46799 * 209.99166 * 1 2 3 32 32 H 1.08993 * 109.47432 * 329.99521 * 1 2 3 33 33 H 1.08000 * 119.96530 * 359.97438 * 3 2 1 34 34 H 1.08001 * 120.03431 * 180.02562 * 4 3 2 35 35 H 1.09002 * 109.47212 * 25.55415 * 7 6 5 36 36 H 1.09003 * 109.46778 * 145.55096 * 7 6 5 37 37 H 0.96996 * 120.00428 * 179.97438 * 11 10 8 38 38 H 1.08004 * 125.04784 * 179.69014 * 20 19 18 39 39 H 1.08011 * 122.78965 * 359.97438 * 24 23 22 40 40 H 1.07997 * 122.39357 * 179.97438 * 25 24 23 41 41 H 1.08002 * 125.00409 * 179.75393 * 26 25 24 42 42 H 1.08005 * 120.04318 * 179.72650 * 28 5 4 43 43 H 1.08003 * 119.96206 * 180.23491 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1986 0.0000 4 6 3.5779 1.2021 -0.0005 5 6 4.2740 0.0002 -0.0005 6 7 5.6723 0.0003 -0.0005 7 6 6.4049 -1.2567 -0.1721 8 6 6.7515 -1.8247 1.1801 9 1 6.4554 -1.3019 2.0774 10 6 7.4459 -3.0124 1.2714 11 7 7.8061 -3.6494 0.1786 12 14 7.8750 -3.7168 2.9475 13 1 6.7796 -4.6094 3.4045 14 1 9.1375 -4.4926 2.8498 15 1 8.0489 -2.6086 3.9204 16 6 6.3461 1.1568 0.1575 17 8 5.7429 2.1827 0.4126 18 6 7.8071 1.1791 0.0217 19 7 8.7133 0.7108 0.9210 20 6 9.9083 0.9108 0.4537 21 8 9.8357 1.5008 -0.7490 22 6 8.5338 1.6803 -1.0534 23 6 7.9926 2.2886 -2.2724 24 6 8.7331 2.8646 -3.2632 25 6 7.9925 3.3675 -4.3078 26 6 6.6675 3.2201 -4.1902 27 16 6.2862 2.3913 -2.6872 28 6 3.5781 -1.2018 -0.0059 29 6 2.1970 -1.1983 0.0000 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8901 0.5137 32 1 -0.3634 0.8899 0.5139 33 1 1.6551 2.1328 -0.0004 34 1 4.1161 2.1385 -0.0001 35 1 5.7837 -1.9679 -0.7166 36 1 7.3205 -1.0699 -0.7334 37 1 8.2949 -4.4847 0.2429 38 1 10.8246 0.6427 0.9585 39 1 9.8112 2.9218 -3.2297 40 1 8.4475 3.8508 -5.1597 41 1 5.9399 3.5585 -4.9130 42 1 4.1163 -2.1381 -0.0103 43 1 1.6552 -2.1327 -0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071886403.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:33 Heat of formation + Delta-G solvation = 72.507309 kcal Electronic energy + Delta-G solvation = -30847.418899 eV Core-core repulsion = 26759.088062 eV Total energy + Delta-G solvation = -4088.330837 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 368.098 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.92676 -40.18862 -38.04757 -37.66880 -35.46899 -34.48250 -32.77814 -31.91526 -31.23406 -30.39974 -28.26469 -27.57483 -26.23138 -24.57259 -23.73174 -23.27270 -22.11551 -21.83000 -20.93378 -19.55256 -19.13091 -17.97102 -17.16207 -16.88905 -16.49489 -16.31497 -15.93935 -15.56024 -15.00857 -14.74797 -14.47237 -14.27930 -13.93596 -13.73335 -13.50735 -13.23286 -13.12638 -13.01045 -12.88916 -12.70418 -12.35459 -12.22756 -11.94630 -11.82240 -11.60727 -11.35953 -10.99829 -10.97527 -10.76138 -10.72526 -10.56555 -10.32412 -10.20767 -10.03038 -9.80661 -9.11697 -9.03955 -8.56232 -8.52983 -8.38228 -7.87785 -7.17692 -6.17004 -4.21685 0.34040 1.32781 1.67515 1.84462 1.93052 1.97022 2.66186 2.77157 2.93473 3.08201 3.25690 3.32184 3.39298 3.54871 4.32687 4.37105 4.42827 4.70152 4.93256 4.98319 5.17864 5.28231 5.31207 5.34556 5.43709 5.55803 5.58291 5.66565 5.76396 5.78869 5.94038 6.01421 6.06765 6.14183 6.19959 6.22772 6.32934 6.34649 6.50431 6.73405 6.87781 6.91462 7.04255 7.13426 7.25810 7.70733 7.77268 7.86136 7.96298 7.97953 8.51049 8.83640 9.43963 10.90649 Molecular weight = 368.10amu Principal moments of inertia in cm(-1) A = 0.006419 B = 0.005586 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4360.997877 B = 5011.569125 C = 8417.663946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.127 4.127 3 C -0.106 4.106 4 C -0.167 4.167 5 C 0.164 3.836 6 N -0.516 5.516 7 C 0.233 3.767 8 C -0.516 4.516 9 H 0.063 0.937 10 C 0.068 3.932 11 N -0.896 5.896 12 Si 0.898 3.102 13 H -0.280 1.280 14 H -0.286 1.286 15 H -0.270 1.270 16 C 0.601 3.399 17 O -0.520 6.520 18 C -0.009 4.009 19 N -0.414 5.414 20 C 0.177 3.823 21 O -0.193 6.193 22 C 0.059 3.941 23 C -0.133 4.133 24 C -0.113 4.113 25 C -0.137 4.137 26 C -0.225 4.225 27 S 0.203 5.797 28 C -0.137 4.137 29 C -0.102 4.102 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.115 0.885 34 H 0.171 0.829 35 H 0.049 0.951 36 H 0.038 0.962 37 H 0.264 0.736 38 H 0.255 0.745 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.169 0.831 42 H 0.139 0.861 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.450 10.594 -7.866 13.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.128 4.128 3 C -0.124 4.124 4 C -0.187 4.187 5 C 0.068 3.932 6 N -0.234 5.234 7 C 0.114 3.886 8 C -0.555 4.555 9 H 0.082 0.918 10 C -0.134 4.134 11 N -0.534 5.534 12 Si 0.725 3.275 13 H -0.206 1.206 14 H -0.212 1.212 15 H -0.195 1.195 16 C 0.388 3.612 17 O -0.399 6.399 18 C -0.133 4.133 19 N -0.141 5.141 20 C -0.051 4.051 21 O -0.080 6.080 22 C 0.002 3.998 23 C -0.251 4.251 24 C -0.145 4.145 25 C -0.167 4.167 26 C -0.361 4.361 27 S 0.470 5.530 28 C -0.157 4.157 29 C -0.121 4.121 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.134 0.866 34 H 0.187 0.813 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.074 0.926 38 H 0.270 0.730 39 H 0.163 0.837 40 H 0.161 0.839 41 H 0.186 0.814 42 H 0.157 0.843 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.046 10.192 -6.554 12.775 hybrid contribution 2.170 -0.166 -0.265 2.192 sum -1.876 10.027 -6.819 12.270 Atomic orbital electron populations 1.20668 0.91998 1.01993 1.01464 1.19789 0.95479 0.93462 1.04118 1.20858 0.93778 0.96895 1.00906 1.22385 0.94350 0.99590 1.02366 1.17986 0.82141 0.94450 0.98588 1.45869 1.04276 1.09723 1.63577 1.19712 0.91677 0.78387 0.98797 1.21233 1.36112 1.06475 0.91657 0.91839 1.24834 0.95197 0.96436 0.96943 1.69925 1.39134 1.16984 1.27403 0.86482 0.77807 0.79062 0.84125 1.20609 1.21188 1.19500 1.16711 0.84280 0.83298 0.76883 1.90522 1.67344 1.34056 1.47993 1.21680 0.95138 1.03948 0.92576 1.70882 0.98493 1.15749 1.28983 1.28090 0.99237 0.96393 0.81370 1.84392 1.26235 1.61633 1.35741 1.20139 0.80951 1.04006 0.94701 1.21815 0.97995 1.08925 0.96375 1.20627 1.01240 0.99716 0.92883 1.19922 0.92840 1.03592 1.00308 1.26060 1.00115 1.07688 1.02285 1.84916 1.01010 1.53679 1.13374 1.21113 0.94069 0.97639 1.02873 1.20738 0.93349 0.97157 1.00815 0.92006 0.92159 0.92224 0.86648 0.81259 0.93333 0.94451 0.92613 0.72951 0.83694 0.83872 0.81357 0.84287 0.86379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.20 10.01 36.01 0.36 -0.84 16 2 C -0.13 -1.95 5.88 -104.59 -0.62 -2.56 16 3 C -0.11 -1.70 9.69 -39.61 -0.38 -2.09 16 4 C -0.17 -3.17 8.97 -39.39 -0.35 -3.52 16 5 C 0.16 3.40 6.48 -83.73 -0.54 2.86 16 6 N -0.52 -11.57 2.69 -116.16 -0.31 -11.88 16 7 C 0.23 5.72 4.40 -5.19 -0.02 5.70 16 8 C -0.52 -13.73 9.18 -34.44 -0.32 -14.04 16 9 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 10 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 11 N -0.90 -24.72 13.29 55.43 0.74 -23.98 16 12 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 16 C 0.60 13.26 5.61 -12.82 -0.07 13.19 16 17 O -0.52 -11.52 13.17 5.18 0.07 -11.45 16 18 C -0.01 -0.19 5.05 -82.26 -0.42 -0.60 16 19 N -0.41 -8.64 11.16 -10.98 -0.12 -8.77 16 20 C 0.18 2.82 13.15 51.93 0.68 3.50 16 21 O -0.19 -3.16 10.75 4.45 0.05 -3.11 16 22 C 0.06 1.08 7.27 -35.89 -0.26 0.82 16 23 C -0.13 -2.17 6.43 -36.86 -0.24 -2.41 16 24 C -0.11 -1.49 10.17 -40.47 -0.41 -1.90 16 25 C -0.14 -1.51 10.14 -41.37 -0.42 -1.93 16 26 C -0.22 -2.58 11.22 29.19 0.33 -2.25 16 27 S 0.20 3.10 21.02 -107.50 -2.26 0.84 16 28 C -0.14 -2.67 9.15 -39.38 -0.36 -3.03 16 29 C -0.10 -1.68 9.69 -39.61 -0.38 -2.07 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 32 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 33 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 34 H 0.17 3.34 4.73 -55.15 -0.26 3.08 16 35 H 0.05 1.22 6.29 -51.93 -0.33 0.90 16 36 H 0.04 0.98 6.94 -51.93 -0.36 0.62 16 37 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 38 H 0.25 2.58 8.06 -52.48 -0.42 2.16 16 39 H 0.15 1.65 8.06 -52.48 -0.42 1.22 16 40 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 41 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16 42 H 0.14 2.90 6.27 -52.48 -0.33 2.57 16 43 H 0.12 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 383.93 15.07 5.79 5.79 Total: -1.00 -31.81 383.93 -9.22 -41.03 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -4.62 Total: 4.88 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -3.52 Total: -9.45 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: 0.30 Total: -44.63 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: 0.12 Total: -14.56 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 3.10 SS G_CDS: -2.26 Total: 0.84 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.81 -9.22 -41.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071886403.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.535 kcal (2) G-P(sol) polarization free energy of solvation -31.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds