Wall clock time and date at job start Tue Mar 31 2020 06:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86793 * 119.99809 * 2 1 4 4 H 1.48504 * 109.47266 * 275.40903 * 3 2 1 5 5 H 1.48501 * 109.47246 * 35.41029 * 3 2 1 6 6 H 1.48505 * 109.47116 * 155.41072 * 3 2 1 7 7 C 1.39939 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00466 * 341.72605 * 7 2 1 9 9 C 1.41435 * 119.99857 * 161.72800 * 7 2 1 10 10 C 1.40792 * 120.17623 * 330.19522 * 9 7 2 11 11 C 1.37718 * 120.03666 * 180.02562 * 10 9 7 12 12 C 1.38365 * 120.41373 * 359.97438 * 11 10 9 13 13 C 1.39882 * 120.36036 * 359.97438 * 12 11 10 14 14 C 1.47886 * 120.02580 * 179.97438 * 13 12 11 15 15 O 1.21548 * 119.99866 * 179.97438 * 14 13 12 16 16 N 1.34773 * 120.00118 * 0.02562 * 14 13 12 17 17 C 1.46496 * 120.00297 * 179.97438 * 16 14 13 18 18 H 1.08999 * 110.53997 * 36.14869 * 17 16 14 19 19 C 1.54627 * 110.49002 * 158.76699 * 17 16 14 20 20 C 1.54485 * 101.76663 * 143.47240 * 19 17 16 21 21 N 1.46766 * 105.47304 * 334.58746 * 20 19 17 22 22 C 1.40044 * 124.34993 * 197.03347 * 21 20 19 23 23 C 1.38809 * 120.08163 * 269.72531 * 22 21 20 24 24 C 1.38146 * 119.95496 * 179.69832 * 23 22 21 25 25 C 1.38281 * 120.11195 * 0.57740 * 24 23 22 26 26 C 1.38263 * 120.15371 * 359.72348 * 25 24 23 27 27 C 1.38309 * 120.04885 * 359.97350 * 26 25 24 28 28 F 1.35105 * 120.05819 * 180.02562 * 27 26 25 29 29 C 1.34421 * 111.29941 * 17.01349 * 21 20 19 30 30 O 1.21291 * 124.93760 * 179.32910 * 29 21 20 31 31 C 1.39028 * 119.94976 * 0.27788 * 13 12 11 32 32 H 0.96998 * 120.00074 * 0.02562 * 1 2 3 33 33 H 1.07990 * 119.97906 * 359.97438 * 10 9 7 34 34 H 1.07998 * 119.78770 * 179.97438 * 11 10 9 35 35 H 1.08003 * 119.81955 * 180.02562 * 12 11 10 36 36 H 0.97002 * 120.00193 * 359.97438 * 16 14 13 37 37 H 1.09001 * 110.97109 * 25.35995 * 19 17 16 38 38 H 1.08988 * 111.00151 * 261.60839 * 19 17 16 39 39 H 1.08997 * 110.24796 * 215.58763 * 20 19 17 40 40 H 1.08996 * 110.24298 * 93.58186 * 20 19 17 41 41 H 1.08004 * 120.01873 * 359.97438 * 23 22 21 42 42 H 1.08000 * 119.93796 * 180.30245 * 24 23 22 43 43 H 1.07999 * 119.92342 * 179.74404 * 25 24 23 44 44 H 1.08003 * 119.97575 * 180.02562 * 26 25 24 45 45 H 1.08001 * 120.20507 * 179.72265 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3754 2.1124 -1.3939 5 1 1.5014 2.6169 0.8112 6 1 3.5923 1.4099 0.5826 7 6 2.0079 -1.2119 0.0005 8 1 1.5088 -2.1236 0.2942 9 6 3.3688 -1.2430 -0.3835 10 6 3.8624 -0.3108 -1.3161 11 6 5.1879 -0.3440 -1.6884 12 6 6.0430 -1.2897 -1.1508 13 6 5.5709 -2.2231 -0.2221 14 6 6.4912 -3.2310 0.3473 15 8 6.0805 -4.0416 1.1546 16 7 7.7854 -3.2501 -0.0281 17 6 8.6972 -4.2482 0.5364 18 1 8.1818 -5.1973 0.6835 19 6 9.9278 -4.4371 -0.3806 20 6 11.0581 -4.6546 0.6497 21 7 10.6030 -3.9896 1.8764 22 6 11.4397 -3.6441 2.9450 23 6 11.6478 -4.5409 3.9838 24 6 12.4786 -4.1999 5.0335 25 6 13.0940 -2.9617 5.0572 26 6 12.8849 -2.0625 4.0280 27 6 12.0594 -2.3996 2.9707 28 9 11.8554 -1.5212 1.9646 29 6 9.2800 -3.7544 1.8422 30 8 8.6449 -3.2275 2.7312 31 6 4.2343 -2.2067 0.1604 32 1 -0.4850 0.8400 -0.0004 33 1 3.2011 0.4300 -1.7403 34 1 5.5622 0.3727 -2.4044 35 1 7.0808 -1.3067 -1.4493 36 1 8.1133 -2.6030 -0.6721 37 1 10.1106 -3.5433 -0.9772 38 1 9.8084 -5.3122 -1.0192 39 1 11.9837 -4.2006 0.2958 40 1 11.2042 -5.7195 0.8301 41 1 11.1641 -5.5065 3.9691 42 1 12.6442 -4.8998 5.8392 43 1 13.7396 -2.6967 5.8814 44 1 13.3673 -1.0964 4.0492 45 1 3.8644 -2.9283 0.8738 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071900086.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:10 Heat of formation + Delta-G solvation = -52.452276 kcal Electronic energy + Delta-G solvation = -32029.089680 eV Core-core repulsion = 27504.960107 eV Total energy + Delta-G solvation = -4524.129572 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 368.132 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -49.18224 -41.18451 -39.45357 -38.71963 -37.23977 -36.62141 -34.72717 -33.67951 -32.30011 -31.03994 -30.58251 -30.00395 -29.03218 -27.28251 -25.17130 -23.87005 -23.18888 -23.05627 -22.00032 -20.68044 -20.38461 -19.84849 -18.21423 -17.96487 -17.41962 -17.19919 -16.56944 -16.36841 -16.14140 -15.78962 -15.49004 -15.35532 -14.71329 -14.59943 -14.56578 -14.33735 -14.01464 -13.70397 -13.68769 -13.58168 -13.34417 -12.96143 -12.74010 -12.72988 -12.68196 -12.42781 -12.29464 -12.00248 -11.76173 -11.62192 -11.46295 -11.02411 -10.77061 -10.52938 -10.42493 -9.99250 -9.70974 -9.49032 -9.42977 -9.26913 -9.15858 -9.11998 -8.78187 -7.85150 -7.74166 -6.98712 -4.53034 0.62122 0.75581 1.91319 2.29548 2.52845 2.53762 3.07312 3.08110 3.19931 3.29370 3.41578 3.61003 3.82781 3.95815 4.08129 4.20220 4.33871 4.48591 4.51438 4.54908 4.57941 4.78872 4.86797 4.96359 5.09933 5.17524 5.33758 5.38739 5.44004 5.56338 5.64000 5.64841 5.80464 5.87227 5.91149 6.03169 6.11737 6.40068 6.44437 6.60516 6.68184 6.70598 6.72647 6.99052 7.22082 7.41784 7.51013 7.71816 7.78091 7.99123 8.01880 8.30117 8.55044 8.67352 8.73866 10.03399 Molecular weight = 368.13amu Principal moments of inertia in cm(-1) A = 0.015233 B = 0.002174 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.651289 B =12878.467162 C =13324.148903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.083 3.917 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.243 1.243 7 C -0.441 4.441 8 H 0.094 0.906 9 C 0.082 3.918 10 C -0.222 4.222 11 C -0.083 4.083 12 C -0.216 4.216 13 C -0.105 4.105 14 C 0.569 3.431 15 O -0.532 6.532 16 N -0.719 5.719 17 C 0.124 3.876 18 H 0.127 0.873 19 C -0.136 4.136 20 C 0.110 3.890 21 N -0.587 5.587 22 C 0.113 3.887 23 C -0.082 4.082 24 C -0.123 4.123 25 C -0.086 4.086 26 C -0.150 4.150 27 C 0.107 3.893 28 F -0.131 7.131 29 C 0.507 3.493 30 O -0.486 6.486 31 C -0.134 4.134 32 H 0.286 0.714 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.405 0.595 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.137 0.863 44 H 0.140 0.860 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.714 -7.583 2.148 29.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.136 4.136 3 Si 0.736 3.264 4 H -0.195 1.195 5 H -0.216 1.216 6 H -0.166 1.166 7 C -0.469 4.469 8 H 0.112 0.888 9 C 0.078 3.922 10 C -0.241 4.241 11 C -0.101 4.101 12 C -0.236 4.236 13 C -0.108 4.108 14 C 0.359 3.641 15 O -0.409 6.409 16 N -0.374 5.374 17 C 0.014 3.986 18 H 0.145 0.855 19 C -0.175 4.175 20 C -0.012 4.012 21 N -0.321 5.321 22 C 0.022 3.978 23 C -0.101 4.101 24 C -0.142 4.142 25 C -0.104 4.104 26 C -0.169 4.169 27 C 0.086 3.914 28 F -0.109 7.109 29 C 0.293 3.707 30 O -0.356 6.356 31 C -0.154 4.154 32 H 0.097 0.903 33 H 0.121 0.879 34 H 0.117 0.883 35 H 0.113 0.887 36 H 0.242 0.758 37 H 0.111 0.889 38 H 0.123 0.877 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.154 0.846 42 H 0.153 0.847 43 H 0.154 0.846 44 H 0.158 0.842 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 27.727 -7.743 3.236 28.969 hybrid contribution 0.450 1.343 -0.492 1.499 sum 28.177 -6.401 2.744 29.025 Atomic orbital electron populations 1.69689 1.08083 1.30377 1.34560 1.26162 0.94757 1.01749 0.90917 0.86325 0.81485 0.79741 0.78844 1.19535 1.21641 1.16642 1.19518 0.92908 0.96344 1.38157 0.88807 1.17707 0.93171 0.91054 0.90222 1.21175 0.95685 1.04295 1.02949 1.20499 0.93746 0.97261 0.98594 1.20361 0.97927 1.00824 1.04535 1.19351 0.94116 0.96983 1.00392 1.18817 0.81108 0.83962 0.80182 1.90713 1.76587 1.40367 1.33209 1.45728 1.09092 1.35467 1.47097 1.21392 0.91063 0.95172 0.90947 0.85541 1.22936 0.92284 1.05036 0.97201 1.22158 0.98248 0.97956 0.82811 1.45579 1.07776 1.61383 1.17405 1.17417 0.96474 0.92909 0.90982 1.21315 0.97011 0.99440 0.92345 1.21148 0.97380 0.97234 0.98448 1.21112 0.98640 0.93055 0.97604 1.21139 1.00195 1.01742 0.93839 1.18076 0.98662 0.87387 0.87263 1.91521 1.93528 1.67483 1.58389 1.21677 0.81036 0.78302 0.89714 1.90796 1.63268 1.40341 1.41185 1.21271 0.91003 1.01899 1.01211 0.90322 0.87862 0.88261 0.88696 0.75825 0.88926 0.87672 0.89874 0.90143 0.84643 0.84681 0.84553 0.84189 0.86606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.50 13.93 55.55 0.77 -20.72 16 2 C 0.08 2.21 5.40 -17.34 -0.09 2.11 16 3 Si 0.91 20.90 24.52 -169.99 -4.17 16.74 16 4 H -0.27 -5.89 6.71 56.52 0.38 -5.51 16 5 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.24 -5.80 6.87 56.52 0.39 -5.41 16 7 C -0.44 -12.11 9.57 -37.73 -0.36 -12.47 16 8 H 0.09 2.70 8.06 -52.48 -0.42 2.27 16 9 C 0.08 2.10 5.10 -106.87 -0.55 1.56 16 10 C -0.22 -5.27 7.17 -38.81 -0.28 -5.55 16 11 C -0.08 -1.72 10.01 -39.72 -0.40 -2.12 16 12 C -0.22 -4.29 9.55 -38.92 -0.37 -4.67 16 13 C -0.11 -2.33 5.87 -105.04 -0.62 -2.95 16 14 C 0.57 11.71 7.73 -12.31 -0.10 11.61 16 15 O -0.53 -12.60 16.05 5.32 0.09 -12.52 16 16 N -0.72 -11.02 5.10 -54.75 -0.28 -11.30 16 17 C 0.12 1.57 3.22 -67.94 -0.22 1.35 16 18 H 0.13 1.65 7.67 -51.93 -0.40 1.25 16 19 C -0.14 -0.95 6.87 -25.10 -0.17 -1.12 16 20 C 0.11 0.76 7.28 -3.12 -0.02 0.73 16 21 N -0.59 -6.73 2.78 -112.19 -0.31 -7.04 16 22 C 0.11 1.28 5.39 -83.59 -0.45 0.82 16 23 C -0.08 -0.74 9.97 -39.40 -0.39 -1.13 16 24 C -0.12 -0.86 10.04 -39.60 -0.40 -1.26 16 25 C -0.09 -0.57 10.04 -39.56 -0.40 -0.97 16 26 C -0.15 -1.27 10.02 -39.55 -0.40 -1.67 16 27 C 0.11 1.21 7.31 -39.25 -0.29 0.92 16 28 F -0.13 -1.69 17.08 2.25 0.04 -1.65 16 29 C 0.51 7.83 7.62 -10.86 -0.08 7.75 16 30 O -0.49 -10.20 17.67 5.55 0.10 -10.10 16 31 C -0.13 -3.33 9.34 -38.44 -0.36 -3.69 16 32 H 0.29 6.91 8.30 -40.82 -0.34 6.58 16 33 H 0.10 2.43 4.73 -52.49 -0.25 2.18 16 34 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 35 H 0.10 1.50 6.38 -52.48 -0.33 1.17 16 36 H 0.40 5.20 6.40 -40.82 -0.26 4.94 16 37 H 0.09 0.58 7.80 -51.93 -0.41 0.17 16 38 H 0.10 0.47 8.14 -51.94 -0.42 0.05 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 42 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 43 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 44 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 45 H 0.12 2.96 7.64 -52.49 -0.40 2.55 16 LS Contribution 386.96 15.07 5.83 5.83 Total: -1.00 -35.68 386.96 -8.89 -44.57 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -5.02 Total: 6.92 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -5.93 Total: -10.73 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.18 Total: -39.06 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: 0.18 Total: -22.62 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.17 Total: 16.74 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.68 -8.89 -44.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071900086.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.879 kcal (2) G-P(sol) polarization free energy of solvation -35.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds