Wall clock time and date at job start Tue Mar 31 2020 06:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86802 * 120.00118 * 2 1 4 4 H 1.48502 * 109.47376 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47054 * 300.00216 * 3 2 1 6 6 H 1.48497 * 109.47036 * 60.00090 * 3 2 1 7 7 C 1.39935 * 119.99937 * 180.02562 * 2 1 3 8 8 H 1.08010 * 120.00146 * 162.40166 * 7 2 1 9 9 C 1.41433 * 119.99990 * 342.67457 * 7 2 1 10 10 C 1.40786 * 120.18002 * 155.33974 * 9 7 2 11 11 C 1.37707 * 120.04327 * 180.02562 * 10 9 7 12 12 C 1.38378 * 120.41169 * 359.97438 * 11 10 9 13 13 C 1.39881 * 120.35736 * 0.02562 * 12 11 10 14 14 C 1.47883 * 120.02230 * 179.97438 * 13 12 11 15 15 O 1.21546 * 119.99688 * 180.02562 * 14 13 12 16 16 N 1.34772 * 120.00214 * 0.02562 * 14 13 12 17 17 C 1.46495 * 119.99942 * 179.97438 * 16 14 13 18 18 H 1.09005 * 110.43471 * 325.70299 * 17 16 14 19 19 C 1.54631 * 110.48670 * 203.16463 * 17 16 14 20 20 C 1.54839 * 101.60085 * 266.07594 * 19 17 16 21 21 N 1.46762 * 105.49658 * 334.56869 * 20 19 17 22 22 C 1.40042 * 124.34784 * 197.01031 * 21 20 19 23 23 C 1.38806 * 120.07876 * 269.77572 * 22 21 20 24 24 C 1.38145 * 119.95228 * 179.72446 * 23 22 21 25 25 C 1.38281 * 120.11176 * 0.55224 * 24 23 22 26 26 C 1.38266 * 120.15786 * 359.72182 * 25 24 23 27 27 C 1.38311 * 120.04192 * 0.02562 * 26 25 24 28 28 F 1.35102 * 120.05300 * 180.02562 * 27 26 25 29 29 C 1.34424 * 111.29904 * 17.03540 * 21 20 19 30 30 O 1.21286 * 124.93854 * 179.55956 * 29 21 20 31 31 C 1.39034 * 119.94804 * 359.72408 * 13 12 11 32 32 H 0.97004 * 119.99982 * 359.97438 * 1 2 3 33 33 H 1.08002 * 119.97635 * 359.97438 * 10 9 7 34 34 H 1.07996 * 119.79606 * 179.97438 * 11 10 9 35 35 H 1.07994 * 119.81956 * 179.97438 * 12 11 10 36 36 H 0.96998 * 120.00400 * 0.02562 * 16 14 13 37 37 H 1.09002 * 110.97022 * 24.23595 * 19 17 16 38 38 H 1.08998 * 110.96862 * 148.00274 * 19 17 16 39 39 H 1.09001 * 110.21973 * 215.56404 * 20 19 17 40 40 H 1.09008 * 110.32073 * 93.62105 * 20 19 17 41 41 H 1.08004 * 120.02309 * 359.97438 * 23 22 21 42 42 H 1.08004 * 119.94724 * 180.29662 * 24 23 22 43 43 H 1.07999 * 119.92042 * 179.74669 * 25 24 23 44 44 H 1.07998 * 119.98216 * 179.97438 * 26 25 24 45 45 H 1.07996 * 120.20439 * 180.25062 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8836 2.3964 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0501 -1.2337 -0.2834 9 6 1.3489 -2.4091 0.3637 10 6 1.8242 -3.6491 -0.1038 11 6 1.1800 -4.8130 0.2522 12 6 0.0643 -4.7742 1.0698 13 6 -0.4225 -3.5516 1.5440 14 6 -1.6158 -3.5187 2.4169 15 8 -2.0387 -2.4560 2.8282 16 7 -2.2343 -4.6670 2.7563 17 6 -3.4160 -4.6344 3.6215 18 1 -3.3306 -3.8300 4.3522 19 6 -3.6033 -5.9943 4.3332 20 6 -4.5813 -6.7158 3.3738 21 7 -5.3075 -5.6472 2.6776 22 6 -6.5074 -5.8321 1.9796 23 6 -6.4844 -6.1520 0.6291 24 6 -7.6695 -6.3394 -0.0555 25 6 -8.8791 -6.1978 0.5996 26 6 -8.9074 -5.8738 1.9434 27 6 -7.7247 -5.6897 2.6364 28 9 -7.7521 -5.3736 3.9496 29 6 -4.6725 -4.4683 2.7956 30 8 -5.0516 -3.4235 2.3100 31 6 0.2194 -2.3678 1.1981 32 1 -0.4850 0.8401 0.0004 33 1 2.6942 -3.6874 -0.7426 34 1 1.5479 -5.7620 -0.1090 35 1 -0.4337 -5.6928 1.3427 36 1 -1.8966 -5.5151 2.4284 37 1 -2.6571 -6.5307 4.4049 38 1 -4.0499 -5.8607 5.3185 39 1 -5.2754 -7.3366 3.9402 40 1 -4.0291 -7.3249 2.6580 41 1 -5.5406 -6.2582 0.1149 42 1 -7.6515 -6.5930 -1.1052 43 1 -9.8038 -6.3411 0.0603 44 1 -9.8537 -5.7634 2.4521 45 1 -0.1505 -1.4218 1.5652 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071900087.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:15 Heat of formation + Delta-G solvation = -54.072000 kcal Electronic energy + Delta-G solvation = -32265.392295 eV Core-core repulsion = 27741.192486 eV Total energy + Delta-G solvation = -4524.199809 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 368.132 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -49.13292 -41.09130 -39.29435 -38.56984 -36.99184 -36.52334 -34.52359 -33.73371 -32.09255 -30.94356 -30.15190 -29.45207 -28.94359 -27.18540 -25.28852 -23.71820 -23.06374 -22.87268 -21.72604 -20.94296 -20.07273 -19.71442 -18.07911 -17.82716 -17.29794 -17.09404 -16.62823 -16.05928 -15.86514 -15.49340 -15.27627 -15.10817 -14.78660 -14.64641 -14.48759 -14.19944 -13.89409 -13.70658 -13.45271 -13.34160 -13.22847 -12.93328 -12.70494 -12.60087 -12.51099 -12.30192 -11.83831 -11.69373 -11.64963 -11.52080 -11.17986 -11.08903 -10.74103 -10.50182 -10.31540 -10.03417 -9.70203 -9.38323 -9.22481 -9.17313 -9.08575 -9.02472 -8.67479 -7.65348 -7.53304 -6.79275 -4.41703 0.70674 0.83986 2.16075 2.38783 2.61542 2.80498 3.08990 3.13752 3.15066 3.16986 3.65458 3.80899 3.89713 3.92698 4.13298 4.33177 4.41877 4.56363 4.60648 4.65341 4.75337 4.87187 4.97120 5.06066 5.24752 5.39585 5.49235 5.53946 5.60166 5.65905 5.71562 5.82198 5.90509 6.00179 6.04377 6.21938 6.23763 6.60737 6.68428 6.70364 6.83754 6.97167 6.99810 7.20418 7.36408 7.66748 7.71438 7.89568 8.01433 8.11744 8.17314 8.49717 8.79590 8.82494 8.88991 10.15155 Molecular weight = 368.13amu Principal moments of inertia in cm(-1) A = 0.013629 B = 0.002289 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.950404 B =12231.704223 C =12642.057525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.072 3.928 3 Si 0.910 3.090 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.270 1.270 7 C -0.458 4.458 8 H 0.082 0.918 9 C 0.099 3.901 10 C -0.212 4.212 11 C -0.097 4.097 12 C -0.220 4.220 13 C -0.125 4.125 14 C 0.564 3.436 15 O -0.526 6.526 16 N -0.721 5.721 17 C 0.123 3.877 18 H 0.123 0.877 19 C -0.139 4.139 20 C 0.106 3.894 21 N -0.585 5.585 22 C 0.114 3.886 23 C -0.080 4.080 24 C -0.122 4.122 25 C -0.087 4.087 26 C -0.151 4.151 27 C 0.105 3.895 28 F -0.132 7.132 29 C 0.510 3.490 30 O -0.489 6.489 31 C -0.091 4.091 32 H 0.285 0.715 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.403 0.597 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.166 -17.217 4.912 22.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.148 4.148 3 Si 0.734 3.266 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.195 1.195 7 C -0.487 4.487 8 H 0.100 0.900 9 C 0.096 3.904 10 C -0.232 4.232 11 C -0.115 4.115 12 C -0.240 4.240 13 C -0.128 4.128 14 C 0.355 3.645 15 O -0.401 6.401 16 N -0.378 5.378 17 C 0.014 3.986 18 H 0.141 0.859 19 C -0.177 4.177 20 C -0.015 4.015 21 N -0.319 5.319 22 C 0.023 3.977 23 C -0.100 4.100 24 C -0.141 4.141 25 C -0.105 4.105 26 C -0.170 4.170 27 C 0.084 3.916 28 F -0.111 7.111 29 C 0.296 3.704 30 O -0.358 6.358 31 C -0.111 4.111 32 H 0.096 0.904 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.239 0.761 37 H 0.123 0.877 38 H 0.117 0.883 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.154 0.846 42 H 0.154 0.846 43 H 0.154 0.846 44 H 0.157 0.843 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.911 -15.632 4.964 22.166 hybrid contribution 0.302 0.271 -0.068 0.411 sum -14.609 -15.362 4.896 21.757 Atomic orbital electron populations 1.69794 1.07567 1.29834 1.33200 1.25988 0.94776 1.01623 0.92369 0.86231 0.80817 0.80819 0.78730 1.18327 1.19905 1.19522 1.19625 0.98100 0.90944 1.40036 0.89996 1.17609 0.91169 0.92523 0.89084 1.21092 1.03454 0.92780 1.05880 1.20419 0.95983 0.96714 0.98387 1.20291 1.01349 0.94453 1.07931 1.19391 0.96119 0.95444 1.01886 1.18965 0.83286 0.82678 0.79601 1.90750 1.65810 1.29694 1.53853 1.45784 1.28442 1.10491 1.53094 1.21383 0.84120 1.00200 0.92929 0.85896 1.23011 1.00878 0.94808 0.99003 1.22256 0.94682 0.89633 0.94957 1.45619 1.21768 1.10651 1.53883 1.17424 0.83938 1.04686 0.91626 1.21366 0.99738 0.96701 0.92168 1.21165 0.91625 1.00672 1.00621 1.21104 0.98676 0.97353 0.93363 1.21108 0.96890 1.03487 0.95524 1.18051 0.93885 1.00915 0.78705 1.91504 1.97301 1.90122 1.32155 1.21676 0.85430 0.82560 0.80737 1.90789 1.68904 1.28840 1.47254 1.21656 0.96331 0.96425 0.96697 0.90360 0.88606 0.88904 0.89362 0.76081 0.87720 0.88286 0.89959 0.90406 0.84556 0.84645 0.84589 0.84269 0.84807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -21.15 10.95 55.55 0.61 -20.54 16 2 C 0.07 1.84 5.15 -17.35 -0.09 1.75 16 3 Si 0.91 19.03 29.59 -169.99 -5.03 14.00 16 4 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 7 C -0.46 -12.09 9.05 -37.73 -0.34 -12.43 16 8 H 0.08 2.05 7.91 -52.48 -0.41 1.63 16 9 C 0.10 2.62 5.57 -106.87 -0.60 2.02 16 10 C -0.21 -5.00 9.78 -38.81 -0.38 -5.38 16 11 C -0.10 -2.02 10.01 -39.72 -0.40 -2.42 16 12 C -0.22 -4.51 9.55 -38.92 -0.37 -4.89 16 13 C -0.13 -2.96 5.87 -105.04 -0.62 -3.57 16 14 C 0.56 12.51 7.77 -12.31 -0.10 12.42 16 15 O -0.53 -13.72 16.01 5.33 0.09 -13.64 16 16 N -0.72 -11.67 5.06 -54.75 -0.28 -11.95 16 17 C 0.12 1.76 3.24 -67.94 -0.22 1.54 16 18 H 0.12 1.95 7.61 -51.93 -0.40 1.55 16 19 C -0.14 -1.15 6.80 -24.90 -0.17 -1.32 16 20 C 0.11 0.89 7.29 -2.93 -0.02 0.86 16 21 N -0.59 -7.53 2.78 -111.98 -0.31 -7.84 16 22 C 0.11 1.43 5.39 -83.60 -0.45 0.98 16 23 C -0.08 -0.87 9.97 -39.41 -0.39 -1.26 16 24 C -0.12 -1.02 10.04 -39.60 -0.40 -1.42 16 25 C -0.09 -0.66 10.04 -39.56 -0.40 -1.06 16 26 C -0.15 -1.37 10.02 -39.54 -0.40 -1.76 16 27 C 0.11 1.26 7.31 -39.25 -0.29 0.97 16 28 F -0.13 -1.73 17.08 2.25 0.04 -1.69 16 29 C 0.51 8.67 7.62 -10.86 -0.08 8.59 16 30 O -0.49 -10.98 17.71 5.55 0.10 -10.88 16 31 C -0.09 -2.45 8.23 -38.44 -0.32 -2.77 16 32 H 0.29 7.14 8.30 -40.82 -0.34 6.81 16 33 H 0.10 2.10 8.06 -52.49 -0.42 1.67 16 34 H 0.09 1.63 8.06 -52.49 -0.42 1.20 16 35 H 0.09 1.44 6.38 -52.49 -0.33 1.11 16 36 H 0.40 5.29 6.62 -40.82 -0.27 5.02 16 37 H 0.10 0.65 8.05 -51.93 -0.42 0.23 16 38 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.52 8.14 -51.92 -0.42 0.10 16 41 H 0.14 1.42 8.06 -52.48 -0.42 0.99 16 42 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 43 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 44 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 45 H 0.13 3.93 5.75 -52.49 -0.30 3.63 16 LS Contribution 392.59 15.07 5.92 5.92 Total: -1.00 -35.70 392.59 -9.96 -45.66 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -5.07 Total: 10.10 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: -6.02 Total: -9.13 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 0.02 Total: -40.33 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: 0.18 Total: -24.52 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.70 -9.96 -45.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071900087.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.410 kcal (2) G-P(sol) polarization free energy of solvation -35.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds