Wall clock time and date at job start Tue Mar 31 2020 06:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00432 * 2 1 4 4 H 1.48506 * 109.47104 * 270.00119 * 3 2 1 5 5 H 1.48495 * 109.46875 * 29.99813 * 3 2 1 6 6 H 1.48495 * 109.47383 * 149.99893 * 3 2 1 7 7 C 1.37881 * 119.99579 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99631 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00011 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.46939 * 180.02562 * 9 7 2 11 11 C 1.34773 * 120.00275 * 90.00173 * 10 9 7 12 12 O 1.21585 * 120.00041 * 187.47378 * 11 10 9 13 13 N 1.34776 * 119.99853 * 7.47100 * 11 10 9 14 14 C 1.39945 * 120.00066 * 183.97490 * 13 11 10 15 15 C 1.38889 * 120.07181 * 321.04420 * 14 13 11 16 16 C 1.38094 * 119.92988 * 179.97438 * 15 14 13 17 17 C 1.38304 * 120.07020 * 0.02562 * 16 15 14 18 18 C 1.38263 * 120.14072 * 0.26642 * 17 16 15 19 19 C 1.50696 * 119.96673 * 179.72649 * 18 17 16 20 20 N 1.46498 * 109.46883 * 90.00045 * 19 18 17 21 21 C 1.35869 * 119.93548 * 90.00294 * 20 19 18 22 22 C 1.36024 * 119.19171 * 179.97438 * 21 20 19 23 23 C 1.39798 * 119.08141 * 359.97438 * 22 21 20 24 24 N 1.31761 * 119.83420 * 0.02562 * 23 22 21 25 25 C 1.33524 * 120.80957 * 359.71860 * 24 23 22 26 26 O 1.21958 * 119.52204 * 180.27733 * 25 24 23 27 27 C 1.38139 * 120.06731 * 359.45369 * 18 17 16 28 28 C 1.46505 * 119.99780 * 270.00163 * 10 9 7 29 29 C 1.53002 * 117.49899 * 194.82815 * 28 10 9 30 30 C 1.53001 * 117.49721 * 126.17274 * 28 10 9 31 31 H 0.97001 * 119.99885 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.46827 * 60.00945 * 9 7 2 33 33 H 1.08996 * 109.47235 * 300.00030 * 9 7 2 34 34 H 0.97004 * 119.99848 * 3.98617 * 13 11 10 35 35 H 1.07994 * 120.03501 * 359.95179 * 15 14 13 36 36 H 1.07997 * 119.96471 * 179.97438 * 16 15 14 37 37 H 1.07994 * 119.92911 * 179.97438 * 17 16 15 38 38 H 1.08996 * 109.47457 * 210.00240 * 19 18 17 39 39 H 1.09004 * 109.47089 * 330.00430 * 19 18 17 40 40 H 1.08001 * 120.40179 * 0.02562 * 21 20 19 41 41 H 1.08004 * 120.45852 * 179.97438 * 22 21 20 42 42 H 1.08004 * 120.08545 * 179.97438 * 23 22 21 43 43 H 1.07995 * 120.03692 * 180.27302 * 27 18 17 44 44 H 1.08996 * 115.55231 * 340.50124 * 28 10 9 45 45 H 1.09002 * 117.49613 * 0.02562 * 29 28 10 46 46 H 1.09002 * 117.49871 * 145.01547 * 29 28 10 47 47 H 1.09005 * 117.49706 * 214.97727 * 30 28 10 48 48 H 1.09002 * 117.50301 * 359.97225 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2508 -2.4992 -0.0005 10 7 2.2028 -3.6127 -0.0005 11 6 2.6407 -4.1250 1.1666 12 8 3.5298 -4.9543 1.1710 13 7 2.0930 -3.7180 2.3289 14 6 2.6031 -4.1868 3.5448 15 6 3.0109 -5.5090 3.6649 16 6 3.5143 -5.9683 4.8660 17 6 3.6120 -5.1134 5.9488 18 6 3.2012 -3.7982 5.8342 19 6 3.3037 -2.8717 7.0183 20 7 4.6098 -2.2083 7.0076 21 6 4.7643 -1.0258 6.3566 22 6 5.9836 -0.4227 6.3568 23 6 7.0452 -1.0367 7.0280 24 7 6.8535 -2.1838 7.6472 25 6 5.6531 -2.7684 7.6478 26 8 5.5008 -3.8276 8.2328 27 6 2.7022 -3.3311 4.6338 28 6 2.6788 -4.1695 -1.2693 29 6 3.3826 -5.5273 -1.2252 30 6 4.1918 -4.2533 -1.4806 31 1 -0.4850 0.8401 -0.0004 32 1 0.6240 -2.5567 -0.8904 33 1 0.6245 -2.5571 0.8896 34 1 1.3452 -3.1002 2.3225 35 1 2.9341 -6.1772 2.8201 36 1 3.8312 -6.9965 4.9602 37 1 4.0056 -5.4752 6.8871 38 1 2.5148 -2.1218 6.9622 39 1 3.1951 -3.4453 7.9389 40 1 3.9290 -0.5698 5.8460 41 1 6.1295 0.5173 5.8455 42 1 8.0203 -0.5723 7.0382 43 1 2.3856 -2.3025 4.5436 44 1 2.0604 -3.9512 -2.1400 45 1 3.4911 -6.0065 -0.2522 46 1 3.2274 -6.2022 -2.0670 47 1 4.5688 -4.0906 -2.4904 48 1 4.8331 -3.8939 -0.6758 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072274521.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:50 Heat of formation + Delta-G solvation = 66.907051 kcal Electronic energy + Delta-G solvation = -33196.929387 eV Core-core repulsion = 28833.728680 eV Total energy + Delta-G solvation = -4363.200707 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 368.164 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.88443 -40.45525 -38.95780 -37.17997 -36.57789 -35.70328 -34.76273 -33.56776 -32.32357 -31.84673 -30.91835 -29.27032 -27.25941 -27.06832 -24.92618 -23.60571 -23.46160 -22.86683 -22.07448 -21.83826 -21.16266 -19.34293 -18.46001 -17.87260 -17.43163 -16.99246 -16.87731 -16.58088 -16.13331 -15.99073 -15.42019 -15.04899 -14.95360 -14.72039 -14.57099 -14.27166 -14.12715 -13.76321 -13.40025 -13.18948 -13.14210 -12.77200 -12.51692 -12.43232 -12.25761 -12.22246 -11.83027 -11.64890 -11.37851 -11.29782 -11.03370 -10.96875 -10.91769 -10.89201 -10.69105 -10.37209 -9.92988 -9.77529 -9.73014 -9.70570 -9.17145 -8.78801 -8.70408 -8.65871 -7.98228 -7.55202 -6.33056 -4.41262 0.41305 1.25865 1.46304 1.50389 2.38835 3.09825 3.11092 3.19108 3.22892 3.52734 3.63912 3.97388 4.07223 4.16041 4.21122 4.35081 4.43943 4.54798 4.60519 4.64285 4.95036 4.99554 5.05218 5.13826 5.30036 5.36317 5.40431 5.46910 5.50922 5.57771 5.62180 5.64530 5.77982 6.00065 6.02198 6.13141 6.18590 6.23571 6.43827 6.48501 6.53483 6.61603 6.64999 6.73618 6.87033 6.96401 7.27006 7.29603 7.60900 7.63333 7.63529 7.88175 8.00307 8.38952 8.69775 9.08952 9.27783 10.72864 Molecular weight = 368.16amu Principal moments of inertia in cm(-1) A = 0.007954 B = 0.003289 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3519.356752 B = 8510.430226 C =10517.106200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.065 3.935 3 Si 0.898 3.102 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.537 4.537 8 H 0.062 0.938 9 C 0.243 3.757 10 N -0.583 5.583 11 C 0.711 3.289 12 O -0.594 6.594 13 N -0.685 5.685 14 C 0.179 3.821 15 C -0.105 4.105 16 C -0.107 4.107 17 C -0.113 4.113 18 C -0.109 4.109 19 C 0.137 3.863 20 N -0.507 5.507 21 C 0.192 3.808 22 C -0.299 4.299 23 C 0.248 3.752 24 N -0.553 5.553 25 C 0.627 3.373 26 O -0.532 6.532 27 C -0.132 4.132 28 C 0.104 3.896 29 C -0.203 4.203 30 C -0.187 4.187 31 H 0.266 0.734 32 H 0.041 0.959 33 H 0.030 0.970 34 H 0.415 0.585 35 H 0.138 0.862 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.103 0.897 39 H 0.112 0.888 40 H 0.175 0.825 41 H 0.159 0.841 42 H 0.173 0.827 43 H 0.126 0.874 44 H 0.125 0.875 45 H 0.136 0.864 46 H 0.080 0.920 47 H 0.086 0.914 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.053 -1.323 9.465 10.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.725 3.275 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.576 4.576 8 H 0.080 0.920 9 C 0.123 3.877 10 N -0.314 5.314 11 C 0.414 3.586 12 O -0.475 6.475 13 N -0.335 5.335 14 C 0.083 3.917 15 C -0.126 4.126 16 C -0.126 4.126 17 C -0.132 4.132 18 C -0.110 4.110 19 C 0.016 3.984 20 N -0.220 5.220 21 C 0.053 3.947 22 C -0.325 4.325 23 C 0.065 3.935 24 N -0.285 5.285 25 C 0.329 3.671 26 O -0.407 6.407 27 C -0.154 4.154 28 C -0.001 4.001 29 C -0.240 4.240 30 C -0.226 4.226 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.048 0.952 34 H 0.255 0.745 35 H 0.156 0.844 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.121 0.879 39 H 0.130 0.870 40 H 0.192 0.808 41 H 0.176 0.824 42 H 0.190 0.810 43 H 0.144 0.856 44 H 0.142 0.858 45 H 0.154 0.846 46 H 0.098 0.902 47 H 0.105 0.895 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.794 -3.137 10.314 11.799 hybrid contribution -0.574 2.118 -0.861 2.357 sum 4.220 -1.019 9.453 10.403 Atomic orbital electron populations 1.69915 1.05978 1.27483 1.49608 1.24944 0.94854 0.99324 0.94655 0.86493 0.79729 0.82726 0.78534 1.20389 1.21029 1.19814 1.21500 0.93741 0.90251 1.52073 0.91968 1.19368 0.87292 0.82718 0.98298 1.46811 1.47164 1.35310 1.02121 1.15818 0.81254 0.81036 0.80469 1.90679 1.33479 1.37596 1.85769 1.42928 1.36923 1.50683 1.02921 1.17466 0.97058 0.92083 0.85074 1.21366 0.98969 0.94325 0.97936 1.21036 0.99292 0.99799 0.92440 1.21087 0.99644 0.93050 0.99438 1.19490 1.02649 0.94808 0.94058 1.20920 0.82031 0.96322 0.99177 1.46698 1.13816 1.18968 1.42530 1.22723 0.99789 0.84131 0.88031 1.21648 0.93004 1.06239 1.11588 1.23685 0.99073 0.87763 0.82963 1.69924 1.19888 1.12904 1.25738 1.18232 0.81291 0.86661 0.80888 1.90965 1.82509 1.21042 1.46212 1.20811 1.03003 0.99053 0.92493 1.21337 0.93660 0.98183 0.86958 1.23880 1.03929 0.91269 1.04945 1.23148 0.95393 1.02389 1.01711 0.92401 0.94118 0.95222 0.74501 0.84445 0.85813 0.85539 0.87883 0.86990 0.80821 0.82365 0.81026 0.85620 0.85759 0.84639 0.90197 0.89534 0.88901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.86 13.29 55.43 0.74 -22.13 16 2 C 0.07 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 19.26 29.54 -169.99 -5.02 14.24 16 4 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 7 C -0.54 -13.13 9.39 -34.44 -0.32 -13.45 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.24 5.35 5.17 -5.19 -0.03 5.33 16 10 N -0.58 -11.71 2.82 -173.17 -0.49 -12.20 16 11 C 0.71 14.13 7.90 -86.92 -0.69 13.44 16 12 O -0.59 -12.37 9.84 5.29 0.05 -12.31 16 13 N -0.69 -12.07 5.21 -14.22 -0.07 -12.15 16 14 C 0.18 2.88 6.22 -83.69 -0.52 2.36 16 15 C -0.11 -1.67 8.67 -39.39 -0.34 -2.01 16 16 C -0.11 -1.50 10.04 -39.61 -0.40 -1.90 16 17 C -0.11 -1.55 9.70 -39.55 -0.38 -1.93 16 18 C -0.11 -1.37 5.46 -104.65 -0.57 -1.94 16 19 C 0.14 1.38 5.48 -5.20 -0.03 1.36 16 20 N -0.51 -5.75 2.57 -123.03 -0.32 -6.06 16 21 C 0.19 1.63 10.41 -16.56 -0.17 1.46 16 22 C -0.30 -2.27 10.07 -39.79 -0.40 -2.67 16 23 C 0.25 2.24 11.30 -17.00 -0.19 2.05 16 24 N -0.55 -7.67 10.48 -16.60 -0.17 -7.84 16 25 C 0.63 9.39 8.35 -88.18 -0.74 8.66 16 26 O -0.53 -9.61 16.23 4.96 0.08 -9.53 16 27 C -0.13 -1.79 9.62 -39.39 -0.38 -2.17 16 28 C 0.10 1.90 6.61 -67.93 -0.45 1.45 16 29 C -0.20 -3.37 9.62 -26.70 -0.26 -3.63 16 30 C -0.19 -3.26 9.89 -26.70 -0.26 -3.53 16 31 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 32 H 0.04 0.95 8.04 -51.93 -0.42 0.53 16 33 H 0.03 0.66 6.06 -51.93 -0.31 0.34 16 34 H 0.42 7.17 6.46 -40.82 -0.26 6.91 16 35 H 0.14 2.33 6.55 -52.49 -0.34 1.98 16 36 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.13 1.74 7.55 -52.49 -0.40 1.35 16 38 H 0.10 0.70 7.98 -51.93 -0.41 0.28 16 39 H 0.11 1.17 7.32 -51.93 -0.38 0.79 16 40 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.16 0.76 8.06 -52.48 -0.42 0.33 16 42 H 0.17 0.88 8.06 -52.48 -0.42 0.45 16 43 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 44 H 0.12 2.08 8.10 -51.93 -0.42 1.66 16 45 H 0.14 2.54 5.16 -52.28 -0.27 2.27 16 46 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 48 H 0.09 1.84 7.67 -51.93 -0.40 1.44 16 LS Contribution 404.25 15.07 6.09 6.09 Total: -1.00 -32.75 404.25 -11.46 -44.21 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -6.12 Total: 13.28 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: -6.23 Total: 4.40 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: -0.32 Total: -60.38 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: 0.13 Total: -21.84 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.24 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.75 -11.46 -44.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072274521.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.119 kcal (2) G-P(sol) polarization free energy of solvation -32.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds