Wall clock time and date at job start Tue Mar 31 2020 06:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00432 * 2 1 4 4 H 1.48506 * 109.47104 * 270.00119 * 3 2 1 5 5 H 1.48495 * 109.46875 * 29.99813 * 3 2 1 6 6 H 1.48495 * 109.47383 * 149.99893 * 3 2 1 7 7 C 1.37881 * 119.99579 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99631 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00011 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.46939 * 180.02562 * 9 7 2 11 11 C 1.34773 * 120.00275 * 90.00173 * 10 9 7 12 12 O 1.21585 * 120.00041 * 187.47378 * 11 10 9 13 13 N 1.34776 * 119.99853 * 7.47100 * 11 10 9 14 14 C 1.39945 * 120.00066 * 183.97490 * 13 11 10 15 15 C 1.38889 * 120.07181 * 321.04420 * 14 13 11 16 16 C 1.38094 * 119.92988 * 179.97438 * 15 14 13 17 17 C 1.38304 * 120.07020 * 0.02562 * 16 15 14 18 18 C 1.38263 * 120.14072 * 0.26642 * 17 16 15 19 19 C 1.50696 * 119.96673 * 179.72649 * 18 17 16 20 20 N 1.46498 * 109.46883 * 90.00045 * 19 18 17 21 21 C 1.35869 * 119.93548 * 90.00294 * 20 19 18 22 22 C 1.36024 * 119.19171 * 179.97438 * 21 20 19 23 23 C 1.39798 * 119.08141 * 359.97438 * 22 21 20 24 24 N 1.31761 * 119.83420 * 0.02562 * 23 22 21 25 25 C 1.33524 * 120.80957 * 359.71860 * 24 23 22 26 26 O 1.21958 * 119.52204 * 180.27733 * 25 24 23 27 27 C 1.38139 * 120.06731 * 359.45369 * 18 17 16 28 28 C 1.46505 * 119.99780 * 270.00163 * 10 9 7 29 29 C 1.53002 * 117.49899 * 194.82815 * 28 10 9 30 30 C 1.53001 * 117.49721 * 126.17274 * 28 10 9 31 31 H 0.97001 * 119.99885 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.46827 * 60.00945 * 9 7 2 33 33 H 1.08996 * 109.47235 * 300.00030 * 9 7 2 34 34 H 0.97004 * 119.99848 * 3.98617 * 13 11 10 35 35 H 1.07994 * 120.03501 * 359.95179 * 15 14 13 36 36 H 1.07997 * 119.96471 * 179.97438 * 16 15 14 37 37 H 1.07994 * 119.92911 * 179.97438 * 17 16 15 38 38 H 1.08996 * 109.47457 * 210.00240 * 19 18 17 39 39 H 1.09004 * 109.47089 * 330.00430 * 19 18 17 40 40 H 1.08001 * 120.40179 * 0.02562 * 21 20 19 41 41 H 1.08004 * 120.45852 * 179.97438 * 22 21 20 42 42 H 1.08004 * 120.08545 * 179.97438 * 23 22 21 43 43 H 1.07995 * 120.03692 * 180.27302 * 27 18 17 44 44 H 1.08996 * 115.55231 * 340.50124 * 28 10 9 45 45 H 1.09002 * 117.49613 * 0.02562 * 29 28 10 46 46 H 1.09002 * 117.49871 * 145.01547 * 29 28 10 47 47 H 1.09005 * 117.49706 * 214.97727 * 30 28 10 48 48 H 1.09002 * 117.50301 * 359.97225 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2508 -2.4992 -0.0005 10 7 2.2028 -3.6127 -0.0005 11 6 2.6407 -4.1250 1.1666 12 8 3.5298 -4.9543 1.1710 13 7 2.0930 -3.7180 2.3289 14 6 2.6031 -4.1868 3.5448 15 6 3.0109 -5.5090 3.6649 16 6 3.5143 -5.9683 4.8660 17 6 3.6120 -5.1134 5.9488 18 6 3.2012 -3.7982 5.8342 19 6 3.3037 -2.8717 7.0183 20 7 4.6098 -2.2083 7.0076 21 6 4.7643 -1.0258 6.3566 22 6 5.9836 -0.4227 6.3568 23 6 7.0452 -1.0367 7.0280 24 7 6.8535 -2.1838 7.6472 25 6 5.6531 -2.7684 7.6478 26 8 5.5008 -3.8276 8.2328 27 6 2.7022 -3.3311 4.6338 28 6 2.6788 -4.1695 -1.2693 29 6 3.3826 -5.5273 -1.2252 30 6 4.1918 -4.2533 -1.4806 31 1 -0.4850 0.8401 -0.0004 32 1 0.6240 -2.5567 -0.8904 33 1 0.6245 -2.5571 0.8896 34 1 1.3452 -3.1002 2.3225 35 1 2.9341 -6.1772 2.8201 36 1 3.8312 -6.9965 4.9602 37 1 4.0056 -5.4752 6.8871 38 1 2.5148 -2.1218 6.9622 39 1 3.1951 -3.4453 7.9389 40 1 3.9290 -0.5698 5.8460 41 1 6.1295 0.5173 5.8455 42 1 8.0203 -0.5723 7.0382 43 1 2.3856 -2.3025 4.5436 44 1 2.0604 -3.9512 -2.1400 45 1 3.4911 -6.0065 -0.2522 46 1 3.2274 -6.2022 -2.0670 47 1 4.5688 -4.0906 -2.4904 48 1 4.8331 -3.8939 -0.6758 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072274521.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:49 Heat of formation + Delta-G solvation = 47.855622 kcal Electronic energy + Delta-G solvation = -33197.755519 eV Core-core repulsion = 28833.728680 eV Total energy + Delta-G solvation = -4364.026839 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 368.164 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.75016 -41.86769 -40.16918 -38.16178 -37.84946 -36.74294 -36.33045 -35.06740 -33.98163 -32.85401 -31.79071 -30.49595 -28.98428 -28.04193 -25.73333 -25.04725 -24.49880 -24.41065 -23.24646 -23.14721 -22.40613 -20.73049 -19.30751 -18.91800 -18.73100 -18.49735 -18.10478 -17.68466 -17.39571 -17.09201 -16.67540 -16.47939 -16.26422 -16.03653 -15.73451 -15.55300 -14.93875 -14.86914 -14.66322 -14.49669 -14.33146 -13.98679 -13.84933 -13.70929 -13.50606 -13.22850 -13.17813 -12.96202 -12.80158 -12.63733 -12.44782 -12.38204 -12.19971 -12.12177 -11.97437 -11.88804 -11.44944 -11.21378 -11.14118 -10.71041 -10.63603 -10.53926 -9.89392 -9.52480 -9.37574 -8.99663 -8.18930 -6.34875 -0.31535 0.17137 0.30441 0.72236 1.42754 1.47050 1.51965 1.54968 1.70312 2.08567 2.41718 2.75016 2.80873 2.87870 3.10848 3.17416 3.33713 3.59883 3.65782 3.74136 3.87968 3.98026 4.04619 4.13329 4.17462 4.25151 4.32993 4.39014 4.41767 4.51717 4.55484 4.70688 4.71759 4.86267 4.89710 4.90471 4.92543 5.06713 5.14780 5.30397 5.33934 5.36171 5.42583 5.46292 5.55859 5.59261 5.68676 5.84757 6.03402 6.05354 6.10979 6.66355 6.73933 6.97158 7.10991 7.37031 7.59056 8.84909 Molecular weight = 368.16amu Principal moments of inertia in cm(-1) A = 0.007954 B = 0.003289 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3519.356752 B = 8510.430226 C =10517.106200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.028 3.972 3 Si 0.955 3.045 4 H -0.282 1.282 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.544 4.544 8 H 0.046 0.954 9 C 0.256 3.744 10 N -0.588 5.588 11 C 0.704 3.296 12 O -0.608 6.608 13 N -0.680 5.680 14 C 0.154 3.846 15 C -0.120 4.120 16 C -0.108 4.108 17 C -0.118 4.118 18 C -0.099 4.099 19 C 0.137 3.863 20 N -0.507 5.507 21 C 0.181 3.819 22 C -0.288 4.288 23 C 0.248 3.752 24 N -0.602 5.602 25 C 0.614 3.386 26 O -0.586 6.586 27 C -0.123 4.123 28 C 0.083 3.917 29 C -0.186 4.186 30 C -0.185 4.185 31 H 0.269 0.731 32 H 0.026 0.974 33 H 0.030 0.970 34 H 0.416 0.584 35 H 0.120 0.880 36 H 0.139 0.861 37 H 0.123 0.877 38 H 0.146 0.854 39 H 0.105 0.895 40 H 0.211 0.789 41 H 0.196 0.804 42 H 0.209 0.791 43 H 0.150 0.850 44 H 0.138 0.862 45 H 0.114 0.886 46 H 0.111 0.889 47 H 0.113 0.887 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.302 1.127 9.138 10.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.173 4.173 3 Si 0.781 3.219 4 H -0.208 1.208 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.583 4.583 8 H 0.064 0.936 9 C 0.136 3.864 10 N -0.320 5.320 11 C 0.407 3.593 12 O -0.490 6.490 13 N -0.330 5.330 14 C 0.059 3.941 15 C -0.141 4.141 16 C -0.127 4.127 17 C -0.138 4.138 18 C -0.100 4.100 19 C 0.016 3.984 20 N -0.219 5.219 21 C 0.044 3.956 22 C -0.312 4.312 23 C 0.070 3.930 24 N -0.337 5.337 25 C 0.317 3.683 26 O -0.465 6.465 27 C -0.145 4.145 28 C -0.023 4.023 29 C -0.223 4.223 30 C -0.224 4.224 31 H 0.078 0.922 32 H 0.044 0.956 33 H 0.047 0.953 34 H 0.255 0.745 35 H 0.138 0.862 36 H 0.156 0.844 37 H 0.141 0.859 38 H 0.164 0.836 39 H 0.123 0.877 40 H 0.228 0.772 41 H 0.213 0.787 42 H 0.226 0.774 43 H 0.168 0.832 44 H 0.155 0.845 45 H 0.132 0.868 46 H 0.129 0.871 47 H 0.131 0.869 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.051 -0.644 9.975 11.200 hybrid contribution -0.597 1.401 -0.763 1.703 sum 4.454 0.756 9.212 10.260 Atomic orbital electron populations 1.69992 1.07061 1.28305 1.50167 1.25568 0.95496 1.02012 0.94209 0.85596 0.78762 0.79318 0.78235 1.20775 1.20161 1.19384 1.21574 0.92986 0.91494 1.52206 0.93573 1.19063 0.87219 0.82671 0.97461 1.46794 1.47075 1.35058 1.03023 1.15991 0.81326 0.81046 0.80932 1.90682 1.34137 1.38140 1.86074 1.42837 1.36782 1.50437 1.02919 1.17734 0.98423 0.92683 0.85228 1.21281 1.00330 0.94435 0.98054 1.21187 0.98857 1.00740 0.91911 1.21225 0.99568 0.93878 0.99116 1.19723 1.00951 0.94711 0.94632 1.21066 0.82730 0.97083 0.97512 1.46563 1.13251 1.19768 1.42283 1.23471 1.01595 0.83034 0.87534 1.22134 0.92036 1.06942 1.10089 1.24399 1.01238 0.86211 0.81153 1.69871 1.19901 1.15413 1.28484 1.18440 0.82306 0.86483 0.81062 1.90907 1.83471 1.23303 1.48833 1.20992 1.02117 0.99743 0.91600 1.21652 0.94358 0.99501 0.86739 1.23797 1.02543 0.90948 1.05014 1.23124 0.94402 1.02783 1.02105 0.92197 0.95600 0.95264 0.74461 0.86199 0.84354 0.85855 0.83645 0.87701 0.77237 0.78704 0.77405 0.83225 0.84470 0.86800 0.87056 0.86900 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -46.19 13.29 21.45 0.28 -45.90 16 2 C 0.03 1.35 5.46 84.66 0.46 1.81 16 3 Si 0.96 38.19 29.54 68.60 2.03 40.21 16 4 H -0.28 -11.39 7.11 99.48 0.71 -10.69 16 5 H -0.28 -10.63 7.11 99.48 0.71 -9.92 16 6 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 7 C -0.54 -26.34 9.39 25.60 0.24 -26.10 16 8 H 0.05 2.36 7.81 -2.91 -0.02 2.33 16 9 C 0.26 11.35 5.17 85.63 0.44 11.79 16 10 N -0.59 -23.80 2.82 -820.05 -2.31 -26.11 16 11 C 0.70 28.38 7.90 179.06 1.41 29.80 16 12 O -0.61 -25.94 9.84 -3.98 -0.04 -25.98 16 13 N -0.68 -24.08 5.21 -317.18 -1.65 -25.74 16 14 C 0.15 4.95 6.22 38.15 0.24 5.18 16 15 C -0.12 -3.91 8.67 22.39 0.19 -3.72 16 16 C -0.11 -3.10 10.04 22.25 0.22 -2.88 16 17 C -0.12 -3.26 9.70 22.29 0.22 -3.04 16 18 C -0.10 -2.37 5.46 -19.88 -0.11 -2.47 16 19 C 0.14 2.51 5.48 85.63 0.47 2.98 16 20 N -0.51 -10.60 2.57 -661.36 -1.70 -12.30 16 21 C 0.18 2.43 10.41 83.55 0.87 3.30 16 22 C -0.29 -3.26 10.07 22.13 0.22 -3.03 16 23 C 0.25 3.90 11.30 85.08 0.96 4.86 16 24 N -0.60 -16.48 10.48 -325.25 -3.41 -19.89 16 25 C 0.61 18.44 8.35 179.50 1.50 19.94 16 26 O -0.59 -22.01 16.23 -5.18 -0.08 -22.10 16 27 C -0.12 -3.14 9.62 22.39 0.22 -2.92 16 28 C 0.08 2.96 6.61 44.99 0.30 3.26 16 29 C -0.19 -6.02 9.62 30.62 0.29 -5.73 16 30 C -0.19 -6.32 9.89 30.62 0.30 -6.01 16 31 H 0.27 12.87 8.31 -92.71 -0.77 12.10 16 32 H 0.03 1.22 8.04 -2.39 -0.02 1.20 16 33 H 0.03 1.30 6.06 -2.39 -0.01 1.28 16 34 H 0.42 14.32 6.46 -92.71 -0.60 13.73 16 35 H 0.12 4.28 6.55 -2.91 -0.02 4.26 16 36 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 37 H 0.12 3.51 7.55 -2.91 -0.02 3.49 16 38 H 0.15 1.40 7.98 -2.39 -0.02 1.38 16 39 H 0.10 2.13 7.32 -2.39 -0.02 2.11 16 40 H 0.21 1.22 8.06 -2.91 -0.02 1.19 16 41 H 0.20 0.78 8.06 -2.91 -0.02 0.75 16 42 H 0.21 1.45 8.06 -2.91 -0.02 1.42 16 43 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 44 H 0.14 4.48 8.10 -2.39 -0.02 4.46 16 45 H 0.11 4.31 5.16 -8.01 -0.04 4.27 16 46 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 47 H 0.11 3.20 8.14 -2.38 -0.02 3.18 16 48 H 0.06 2.57 7.67 -2.39 -0.02 2.56 16 Total: -1.00 -74.18 404.25 1.95 -72.23 By element: Atomic # 1 Polarization: 38.18 SS G_CDS: 0.38 Total: 38.57 kcal Atomic # 6 Polarization: 18.56 SS G_CDS: 8.45 Total: 27.01 kcal Atomic # 7 Polarization: -121.16 SS G_CDS: -8.79 Total: -129.95 kcal Atomic # 8 Polarization: -47.96 SS G_CDS: -0.12 Total: -48.08 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 2.03 Total: 40.21 kcal Total: -74.18 1.95 -72.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072274521.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.089 kcal (2) G-P(sol) polarization free energy of solvation -74.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds