Wall clock time and date at job start Tue Mar 31 2020 06:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34696 * 117.00025 * 2 1 4 4 O 1.21446 * 119.99866 * 0.02562 * 3 2 1 5 5 C 1.47886 * 120.00174 * 179.97438 * 3 2 1 6 6 C 1.39929 * 120.46745 * 179.97438 * 5 3 2 7 7 C 1.38428 * 118.35445 * 179.97438 * 6 5 3 8 8 C 1.39325 * 119.19628 * 359.97438 * 7 6 5 9 9 C 1.48294 * 119.56796 * 179.97438 * 8 7 6 10 10 O 1.21510 * 120.00026 * 353.81408 * 9 8 7 11 11 N 1.34779 * 120.00173 * 173.81913 * 9 8 7 12 12 C 1.46502 * 119.99833 * 1.75875 * 11 9 8 13 13 C 1.50704 * 109.47058 * 82.78629 * 12 11 9 14 14 H 1.07995 * 119.99819 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99731 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99446 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 120.00060 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.46968 * 90.00226 * 17 15 13 19 19 H 1.48508 * 109.46897 * 209.99596 * 17 15 13 20 20 H 1.48494 * 109.47558 * 330.00277 * 17 15 13 21 21 C 1.39811 * 120.00343 * 181.76243 * 11 9 8 22 22 C 1.38916 * 120.07471 * 171.35227 * 21 11 9 23 23 C 1.38089 * 119.92984 * 179.97438 * 22 21 11 24 24 C 1.38314 * 120.06587 * 359.97438 * 23 22 21 25 25 C 1.50699 * 119.92296 * 180.02562 * 24 23 22 26 26 C 1.38262 * 120.15228 * 0.02562 * 24 23 22 27 27 C 1.50695 * 119.96599 * 179.97438 * 26 24 23 28 28 C 1.38130 * 120.06978 * 359.75106 * 26 24 23 29 29 N 1.32737 * 120.86338 * 0.02562 * 8 7 6 30 30 C 1.31405 * 121.80272 * 359.97438 * 29 8 7 31 31 H 1.08997 * 109.47425 * 59.99699 * 1 2 3 32 32 H 1.09001 * 109.47181 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47388 * 299.99897 * 1 2 3 34 34 H 1.08001 * 120.81999 * 359.96512 * 6 5 3 35 35 H 1.07997 * 120.40033 * 179.73016 * 7 6 5 36 36 H 1.08996 * 109.47033 * 202.78703 * 12 11 9 37 37 H 1.09000 * 109.47020 * 322.78794 * 12 11 9 38 38 H 0.97001 * 120.00060 * 180.02562 * 16 15 13 39 39 H 1.08001 * 120.04186 * 0.02562 * 22 21 11 40 40 H 1.07992 * 119.96547 * 180.02562 * 23 22 21 41 41 H 1.08998 * 109.47423 * 89.99740 * 25 24 23 42 42 H 1.08997 * 109.47075 * 210.00366 * 25 24 23 43 43 H 1.09004 * 109.46802 * 329.99821 * 25 24 23 44 44 H 1.08997 * 109.46921 * 89.99910 * 27 26 24 45 45 H 1.08994 * 109.47713 * 210.00277 * 27 26 24 46 46 H 1.09004 * 109.47193 * 330.00236 * 27 26 24 47 47 H 1.08005 * 120.03631 * 180.27839 * 28 26 24 48 48 H 1.08001 * 119.64080 * 180.02562 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0634 1.2001 0.0000 4 8 1.4020 2.2187 0.0005 5 6 3.5403 1.2776 0.0006 6 6 4.1856 2.5192 0.0000 7 6 5.5698 2.5406 0.0012 8 6 6.2682 1.3351 0.0033 9 6 7.7510 1.3484 0.0039 10 8 8.3492 2.3999 -0.1108 11 7 8.4354 0.1943 0.1317 12 6 7.7148 -1.0773 0.2311 13 6 7.3517 -1.5583 -1.1501 14 1 7.6302 -0.9754 -2.0155 15 6 6.6648 -2.7433 -1.3090 16 7 6.3484 -3.1632 -2.5145 17 14 6.1837 -3.7519 0.1877 18 1 4.8423 -3.3259 0.6614 19 1 6.1459 -5.1911 -0.1765 20 1 7.1802 -3.5407 1.2682 21 6 9.8329 0.2107 0.1693 22 6 10.5345 -0.9474 0.4795 23 6 11.9148 -0.9280 0.5153 24 6 12.5987 0.2428 0.2422 25 6 14.1051 0.2602 0.2816 26 6 11.9034 1.3972 -0.0669 27 6 12.6528 2.6706 -0.3632 28 6 10.5228 1.3834 -0.1089 29 7 5.6236 0.1747 0.0038 30 6 4.3111 0.1116 0.0027 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 3.6179 3.4379 -0.0014 35 1 6.1018 3.4804 -0.0036 36 1 8.3495 -1.8174 0.7185 37 1 6.8065 -0.9354 0.8169 38 1 5.8649 -3.9966 -2.6264 39 1 10.0012 -1.8623 0.6917 40 1 12.4608 -1.8281 0.7560 41 1 14.4972 0.0149 -0.7053 42 1 14.4494 1.2523 0.5733 43 1 14.4580 -0.4743 1.0057 44 1 12.8628 2.7285 -1.4312 45 1 12.0471 3.5264 -0.0651 46 1 13.5905 2.6781 0.1924 47 1 9.9804 2.2844 -0.3549 48 1 3.8226 -0.8516 0.0036 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072281071.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:23 Heat of formation + Delta-G solvation = -13.321606 kcal Electronic energy + Delta-G solvation = -33229.609010 eV Core-core repulsion = 28830.636576 eV Total energy + Delta-G solvation = -4398.972434 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 368.157 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.03230 -40.41682 -39.38235 -38.13515 -36.56074 -35.82708 -33.09507 -32.47793 -32.00535 -31.84715 -31.15793 -28.39144 -28.08485 -26.81579 -26.26742 -24.79982 -23.53706 -22.91787 -21.83343 -21.58828 -20.66579 -19.16736 -18.15929 -17.37935 -17.11016 -16.99887 -16.65752 -16.46886 -15.85569 -15.36869 -15.07073 -15.05054 -14.60034 -14.32983 -14.02011 -13.92863 -13.74573 -13.64315 -13.32764 -13.13321 -13.01941 -12.85644 -12.63544 -12.54248 -12.39767 -12.30394 -12.25762 -11.90888 -11.71143 -11.50931 -11.29172 -11.01073 -10.93862 -10.83661 -10.76189 -10.53379 -10.32867 -9.91349 -9.69770 -9.31212 -9.19558 -9.00813 -8.74689 -8.49312 -8.24527 -7.18370 -6.13693 -4.08647 0.23819 1.31476 1.70602 1.89721 2.34148 2.53072 3.11371 3.19882 3.26146 3.28824 3.36273 3.98483 4.28770 4.32342 4.32912 4.65678 4.77763 4.82664 4.96722 4.99103 5.04326 5.13958 5.16870 5.18711 5.25977 5.36799 5.38261 5.44410 5.64905 5.69290 5.79347 5.86907 5.88686 5.90440 5.97101 6.02393 6.04417 6.14783 6.19926 6.21827 6.42626 6.46520 6.66511 6.82792 6.88511 6.94398 7.09868 7.18609 7.49278 7.57196 7.68509 7.84994 7.96262 8.37819 8.53024 8.88298 9.45099 10.99359 Molecular weight = 368.16amu Principal moments of inertia in cm(-1) A = 0.011124 B = 0.003152 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.369904 B = 8880.705741 C =10939.405656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.349 6.349 3 C 0.519 3.481 4 O -0.508 6.508 5 C -0.169 4.169 6 C -0.027 4.027 7 C -0.128 4.128 8 C 0.118 3.882 9 C 0.568 3.432 10 O -0.531 6.531 11 N -0.505 5.505 12 C 0.189 3.811 13 C -0.499 4.499 14 H 0.072 0.928 15 C 0.081 3.919 16 N -0.894 5.894 17 Si 0.867 3.133 18 H -0.271 1.271 19 H -0.287 1.287 20 H -0.266 1.266 21 C 0.164 3.836 22 C -0.147 4.147 23 C -0.098 4.098 24 C -0.125 4.125 25 C -0.108 4.108 26 C -0.074 4.074 27 C -0.111 4.111 28 C -0.167 4.167 29 N -0.397 5.397 30 C 0.154 3.846 31 H 0.064 0.936 32 H 0.104 0.896 33 H 0.063 0.937 34 H 0.151 0.849 35 H 0.155 0.845 36 H 0.034 0.966 37 H 0.078 0.922 38 H 0.264 0.736 39 H 0.132 0.868 40 H 0.119 0.881 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.066 0.934 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.177 0.823 48 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.564 7.192 7.567 10.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.265 6.265 3 C 0.363 3.637 4 O -0.397 6.397 5 C -0.173 4.173 6 C -0.052 4.052 7 C -0.149 4.149 8 C -0.020 4.020 9 C 0.357 3.643 10 O -0.411 6.411 11 N -0.222 5.222 12 C 0.069 3.931 13 C -0.538 4.538 14 H 0.090 0.910 15 C -0.122 4.122 16 N -0.533 5.533 17 Si 0.694 3.306 18 H -0.196 1.196 19 H -0.213 1.213 20 H -0.191 1.191 21 C 0.069 3.931 22 C -0.167 4.167 23 C -0.117 4.117 24 C -0.126 4.126 25 C -0.164 4.164 26 C -0.075 4.075 27 C -0.167 4.167 28 C -0.186 4.186 29 N -0.107 5.107 30 C -0.006 4.006 31 H 0.083 0.917 32 H 0.122 0.878 33 H 0.082 0.918 34 H 0.169 0.831 35 H 0.172 0.828 36 H 0.052 0.948 37 H 0.095 0.905 38 H 0.074 0.926 39 H 0.150 0.850 40 H 0.137 0.863 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.194 0.806 48 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -0.160 7.072 7.413 10.246 hybrid contribution -1.239 -0.277 0.397 1.330 sum -1.399 6.795 7.810 10.446 Atomic orbital electron populations 1.23306 0.75777 1.03981 1.02550 1.86586 1.23700 1.32242 1.83988 1.21024 0.88716 0.81544 0.72404 1.90810 1.66726 1.36052 1.46130 1.20345 0.90285 0.96531 1.10128 1.21569 0.93867 0.97189 0.92616 1.22002 0.93615 0.99679 0.99581 1.21361 0.94506 0.89712 0.96408 1.17981 0.85897 0.83200 0.77223 1.90393 1.67612 1.31879 1.51207 1.45593 1.04122 1.09288 1.63179 1.20780 0.92877 0.79049 1.00379 1.20989 1.35659 1.06438 0.90725 0.91039 1.24673 0.95146 0.96980 0.95360 1.69888 1.39897 1.22291 1.21210 0.87007 0.79904 0.79833 0.83821 1.19596 1.21311 1.19129 1.17984 0.82292 0.94813 0.98005 1.20994 0.94159 0.97741 1.03792 1.20690 0.93299 0.97150 1.00544 1.19633 0.95449 0.93542 1.04006 1.20742 0.92025 1.02031 1.01635 1.19626 0.93411 0.94816 0.99656 1.20782 0.99597 0.94815 1.01528 1.22449 0.93676 1.00294 1.02189 1.68768 1.08606 1.25470 1.07858 1.23488 0.89342 0.97936 0.89798 0.91723 0.87780 0.91821 0.83124 0.82771 0.94806 0.90467 0.92563 0.85002 0.86313 0.91856 0.91747 0.92276 0.91559 0.91742 0.91669 0.80634 0.81025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.42 16 2 O -0.35 -4.62 9.84 -40.48 -0.40 -5.02 16 3 C 0.52 7.51 7.91 34.68 0.27 7.79 16 4 O -0.51 -7.93 16.20 -19.22 -0.31 -8.24 16 5 C -0.17 -2.53 5.89 -104.74 -0.62 -3.15 16 6 C -0.03 -0.36 9.71 -38.88 -0.38 -0.74 16 7 C -0.13 -1.90 9.62 -39.11 -0.38 -2.28 16 8 C 0.12 2.17 6.62 -82.94 -0.55 1.62 16 9 C 0.57 11.47 7.54 -12.12 -0.09 11.37 16 10 O -0.53 -10.65 12.75 5.36 0.07 -10.58 16 11 N -0.51 -10.71 2.70 -115.64 -0.31 -11.02 16 12 C 0.19 4.20 3.59 -5.19 -0.02 4.18 16 13 C -0.50 -12.97 8.40 -34.44 -0.29 -13.26 16 14 H 0.07 2.14 8.06 -52.49 -0.42 1.72 16 15 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 16 N -0.89 -25.59 13.96 55.43 0.77 -24.82 16 17 Si 0.87 19.51 27.47 -169.99 -4.67 14.85 16 18 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 19 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.27 -5.72 6.54 56.52 0.37 -5.35 16 21 C 0.16 3.33 6.48 -83.73 -0.54 2.79 16 22 C -0.15 -2.75 9.30 -39.38 -0.37 -3.12 16 23 C -0.10 -1.58 9.69 -39.61 -0.38 -1.97 16 24 C -0.13 -1.91 5.88 -104.59 -0.62 -2.52 16 25 C -0.11 -1.23 9.60 36.01 0.35 -0.88 16 26 C -0.07 -1.20 5.88 -104.65 -0.62 -1.82 16 27 C -0.11 -1.39 9.60 36.00 0.35 -1.04 16 28 C -0.17 -3.15 8.67 -39.38 -0.34 -3.49 16 29 N -0.40 -7.68 4.89 -9.47 -0.05 -7.73 16 30 C 0.15 2.60 10.78 -17.16 -0.19 2.42 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.15 1.71 7.73 -52.49 -0.41 1.30 16 35 H 0.15 2.00 7.64 -52.49 -0.40 1.60 16 36 H 0.03 0.75 4.69 -51.93 -0.24 0.51 16 37 H 0.08 1.68 4.76 -51.96 -0.25 1.43 16 38 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.13 2.49 5.88 -52.49 -0.31 2.18 16 40 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.65 5.94 -51.93 -0.31 0.34 16 43 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 46 H 0.06 0.69 5.94 -51.93 -0.31 0.38 16 47 H 0.18 3.45 4.61 -55.83 -0.26 3.19 16 48 H 0.17 2.81 7.62 -52.49 -0.40 2.41 16 LS Contribution 395.84 15.07 5.97 5.97 Total: -1.00 -31.16 395.84 -8.21 -39.37 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -5.85 Total: 7.87 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -3.43 Total: -0.64 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: 0.41 Total: -43.57 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.64 Total: -23.84 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -4.67 Total: 14.85 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.16 -8.21 -39.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072281071.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.049 kcal (2) G-P(sol) polarization free energy of solvation -31.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds