Wall clock time and date at job start Tue Mar 31 2020 06:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 119.99989 * 2 1 4 4 H 1.48502 * 109.46827 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47423 * 299.99899 * 3 2 1 6 6 H 1.48505 * 109.47055 * 60.00318 * 3 2 1 7 7 C 1.37876 * 119.99485 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99717 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00339 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.47399 * 179.97438 * 9 7 2 11 11 C 1.46496 * 120.00230 * 270.00165 * 10 9 7 12 12 C 1.50700 * 109.47204 * 269.99660 * 11 10 9 13 13 C 1.34516 * 125.78774 * 89.71762 * 12 11 10 14 14 C 1.41383 * 106.83805 * 179.89270 * 13 12 11 15 15 C 1.34511 * 106.84104 * 0.36684 * 14 13 12 16 16 O 1.34296 * 125.78922 * 270.02249 * 12 11 10 17 17 C 1.34774 * 119.99563 * 90.00054 * 10 9 7 18 18 O 1.21588 * 120.00093 * 180.02562 * 17 10 9 19 19 N 1.34778 * 120.00227 * 0.02562 * 17 10 9 20 20 C 1.39954 * 119.99874 * 184.61183 * 19 17 10 21 21 C 1.38861 * 120.06701 * 324.65498 * 20 19 17 22 22 C 1.38116 * 119.92890 * 179.69971 * 21 20 19 23 23 C 1.38289 * 120.06833 * 0.60651 * 22 21 20 24 24 C 1.50695 * 119.93366 * 179.69948 * 23 22 21 25 25 F 1.39901 * 109.46903 * 269.97575 * 24 23 22 26 26 F 1.39905 * 109.46857 * 29.97284 * 24 23 22 27 27 F 1.39898 * 109.47290 * 149.97792 * 24 23 22 28 28 C 1.38281 * 120.13460 * 359.67382 * 23 22 21 29 29 C 1.38108 * 120.07490 * 0.02562 * 28 23 22 30 30 H 0.97004 * 119.99734 * 0.02562 * 1 2 3 31 31 H 1.09006 * 109.47375 * 60.00201 * 9 7 2 32 32 H 1.09000 * 109.47548 * 300.00321 * 9 7 2 33 33 H 1.09003 * 109.46975 * 29.99578 * 11 10 9 34 34 H 1.08999 * 109.47063 * 149.99586 * 11 10 9 35 35 H 1.07998 * 126.57737 * 0.02562 * 13 12 11 36 36 H 1.08001 * 126.57907 * 180.16795 * 14 13 12 37 37 H 1.08003 * 125.78907 * 179.75580 * 15 14 13 38 38 H 0.96992 * 120.00170 * 4.61226 * 19 17 10 39 39 H 1.07997 * 120.04147 * 0.02562 * 21 20 19 40 40 H 1.08001 * 119.97325 * 180.28293 * 22 21 20 41 41 H 1.08004 * 119.96357 * 180.02562 * 28 23 22 42 42 H 1.07996 * 120.04044 * 179.97438 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 7 2.2029 -3.6127 -0.0027 11 6 2.6789 -4.1684 -1.2719 12 6 1.7622 -5.2822 -1.7079 13 6 0.6666 -5.1441 -2.4761 14 6 0.1142 -6.4355 -2.6376 15 6 0.9006 -7.2843 -1.9518 16 8 1.8972 -6.5802 -1.3907 17 6 2.6407 -4.1260 1.1641 18 8 3.4311 -5.0499 1.1634 19 7 2.2024 -3.6151 2.3317 20 6 2.7289 -4.0821 3.5414 21 6 3.0765 -5.4195 3.6786 22 6 3.6017 -5.8761 4.8717 23 6 3.7697 -5.0055 5.9330 24 6 4.3366 -5.5084 7.2355 25 9 3.2941 -5.9431 8.0609 26 9 5.2079 -6.5739 6.9844 27 9 5.0342 -4.4752 7.8704 28 6 3.4190 -3.6744 5.8012 29 6 2.8992 -3.2104 4.6088 30 1 -0.4850 0.8401 -0.0004 31 1 0.6246 -2.5563 -0.8920 32 1 0.6239 -2.5575 0.8879 33 1 2.6867 -3.3861 -2.0308 34 1 3.6883 -4.5585 -1.1418 35 1 0.2838 -4.2237 -2.8916 36 1 -0.7713 -6.6909 -3.2007 37 1 0.7551 -8.3511 -1.8665 38 1 1.5221 -2.9237 2.3337 39 1 2.9413 -6.1009 2.8517 40 1 3.8765 -6.9151 4.9777 41 1 3.5518 -2.9969 6.6318 42 1 2.6251 -2.1708 4.5067 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072285594.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:30 Heat of formation + Delta-G solvation = -127.241486 kcal Electronic energy + Delta-G solvation = -32827.945176 eV Core-core repulsion = 27746.342970 eV Total energy + Delta-G solvation = -5081.602206 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 368.113 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.15785 -47.67849 -47.62208 -42.24650 -40.42602 -38.71899 -35.56864 -34.68248 -32.92403 -32.60666 -31.05581 -31.00102 -29.80506 -27.51161 -26.13089 -24.92032 -23.25512 -23.01413 -21.88205 -21.41367 -20.43589 -19.52653 -18.51222 -18.45104 -18.35326 -17.89758 -17.22536 -16.96695 -16.49624 -15.88815 -15.25642 -14.95318 -14.84665 -14.65820 -14.58878 -14.45157 -14.35009 -14.09804 -13.94978 -13.82396 -13.79345 -13.57972 -13.30766 -13.25157 -12.83372 -12.60107 -12.54628 -12.48901 -12.32128 -11.78558 -11.58608 -11.45978 -11.33090 -11.06918 -10.91027 -10.39962 -10.24801 -9.95901 -9.65986 -9.61102 -8.98230 -8.74731 -8.33115 -8.24259 -7.88473 -6.35588 -4.44960 0.99703 1.36516 1.93874 2.68524 2.79061 3.11621 3.15946 3.21447 3.22319 3.26605 3.44547 3.77058 3.85990 4.05178 4.17354 4.42361 4.45521 4.88243 4.89853 4.98062 5.00053 5.27447 5.29778 5.32750 5.45095 5.56564 5.64791 5.93422 5.95787 6.04808 6.05257 6.19868 6.27439 6.34855 6.37958 6.44712 6.58121 6.75970 6.89410 7.04946 7.10945 7.43358 7.49235 7.59505 7.83106 8.27495 8.64513 8.95612 9.25280 10.70688 Molecular weight = 368.11amu Principal moments of inertia in cm(-1) A = 0.007610 B = 0.003105 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3678.394361 B = 9015.114944 C =12066.981758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.068 3.932 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.238 3.762 10 N -0.603 5.603 11 C 0.213 3.787 12 C -0.018 4.018 13 C -0.201 4.201 14 C -0.217 4.217 15 C -0.051 4.051 16 O -0.166 6.166 17 C 0.710 3.290 18 O -0.592 6.592 19 N -0.680 5.680 20 C 0.218 3.782 21 C -0.128 4.128 22 C -0.052 4.052 23 C -0.219 4.219 24 C 0.512 3.488 25 F -0.181 7.181 26 F -0.180 7.180 27 F -0.181 7.181 28 C -0.050 4.050 29 C -0.154 4.154 30 H 0.267 0.733 31 H 0.044 0.956 32 H 0.031 0.969 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.149 0.851 36 H 0.143 0.857 37 H 0.196 0.804 38 H 0.422 0.578 39 H 0.152 0.848 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.372 -9.889 5.699 11.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.584 4.584 8 H 0.083 0.917 9 C 0.119 3.881 10 N -0.336 5.336 11 C 0.089 3.911 12 C -0.070 4.070 13 C -0.221 4.221 14 C -0.237 4.237 15 C -0.119 4.119 16 O -0.061 6.061 17 C 0.413 3.587 18 O -0.471 6.471 19 N -0.328 5.328 20 C 0.120 3.880 21 C -0.149 4.149 22 C -0.071 4.071 23 C -0.221 4.221 24 C 0.458 3.542 25 F -0.162 7.162 26 F -0.162 7.162 27 F -0.162 7.162 28 C -0.069 4.069 29 C -0.175 4.175 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.133 0.867 34 H 0.111 0.889 35 H 0.167 0.833 36 H 0.161 0.839 37 H 0.213 0.787 38 H 0.262 0.738 39 H 0.170 0.830 40 H 0.151 0.849 41 H 0.153 0.847 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.987 -10.477 5.779 12.332 hybrid contribution -0.282 1.351 -0.004 1.380 sum 2.705 -9.126 5.775 11.133 Atomic orbital electron populations 1.69929 1.06026 1.27528 1.49069 1.24948 0.94851 0.99417 0.94410 0.86433 0.80168 0.82996 0.77883 1.19581 1.20748 1.20755 1.21533 0.93819 0.90172 1.52858 0.91702 1.19440 0.87387 0.82565 0.98736 1.47458 1.47793 1.35774 1.02554 1.19613 0.95154 0.90186 0.86132 1.23252 1.00197 0.83070 1.00512 1.21686 0.97185 0.98828 1.04360 1.21798 1.02931 0.93262 1.05666 1.23972 0.90084 0.97894 0.99991 1.84107 1.44180 1.18697 1.59101 1.15790 0.80592 0.81678 0.80670 1.90854 1.38853 1.31113 1.86320 1.42971 1.43434 1.43539 1.02872 1.17831 0.92865 0.92168 0.85175 1.21369 1.00948 0.94716 0.97856 1.20766 0.95670 0.99322 0.91356 1.19803 1.11963 0.96773 0.93587 1.18319 0.75675 0.75077 0.85132 1.93208 1.58177 1.90047 1.74798 1.93174 1.70799 1.57946 1.94249 1.93170 1.80065 1.58865 1.84108 1.20616 0.95216 0.93410 0.97618 1.20954 1.03696 0.99981 0.92862 0.92351 0.93813 0.95164 0.86706 0.88938 0.83337 0.83872 0.78700 0.73794 0.83043 0.84894 0.84724 0.84258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.63 13.29 55.43 0.74 -21.89 16 2 C 0.07 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 19.26 29.54 -169.99 -5.02 14.24 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.55 -12.87 9.39 -34.44 -0.32 -13.19 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.24 5.10 4.97 -5.19 -0.03 5.07 16 10 N -0.60 -11.68 2.44 -182.18 -0.44 -12.12 16 11 C 0.21 3.68 5.94 -5.20 -0.03 3.65 16 12 C -0.02 -0.31 6.90 -35.62 -0.25 -0.56 16 13 C -0.20 -3.15 10.81 -39.70 -0.43 -3.58 16 14 C -0.22 -2.99 10.91 -39.70 -0.43 -3.42 16 15 C -0.05 -0.69 12.09 29.41 0.36 -0.33 16 16 O -0.17 -2.81 10.65 5.72 0.06 -2.75 16 17 C 0.71 13.98 8.12 -86.92 -0.71 13.28 16 18 O -0.59 -12.47 13.37 5.29 0.07 -12.40 16 19 N -0.68 -11.98 5.22 -14.22 -0.07 -12.05 16 20 C 0.22 3.47 6.29 -83.69 -0.53 2.94 16 21 C -0.13 -1.98 8.69 -39.40 -0.34 -2.33 16 22 C -0.05 -0.70 9.39 -39.61 -0.37 -1.07 16 23 C -0.22 -2.82 5.46 -104.59 -0.57 -3.39 16 24 C 0.51 6.22 3.36 36.00 0.12 6.34 16 25 F -0.18 -2.22 17.30 2.25 0.04 -2.18 16 26 F -0.18 -2.23 16.46 2.25 0.04 -2.19 16 27 F -0.18 -2.19 16.46 2.25 0.04 -2.15 16 28 C -0.05 -0.62 9.39 -39.61 -0.37 -0.99 16 29 C -0.15 -2.11 9.97 -39.40 -0.39 -2.50 16 30 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 31 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 32 H 0.03 0.67 6.30 -51.93 -0.33 0.34 16 33 H 0.11 1.83 8.07 -51.93 -0.42 1.41 16 34 H 0.09 1.59 7.42 -51.93 -0.39 1.21 16 35 H 0.15 2.23 8.06 -52.49 -0.42 1.80 16 36 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.20 1.82 8.06 -52.48 -0.42 1.40 16 38 H 0.42 7.36 6.52 -40.82 -0.27 7.09 16 39 H 0.15 2.56 6.24 -52.49 -0.33 2.23 16 40 H 0.13 1.52 7.60 -52.49 -0.40 1.12 16 41 H 0.13 1.37 7.60 -52.48 -0.40 0.98 16 42 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 379.34 15.07 5.72 5.72 Total: -1.00 -27.69 379.34 -7.41 -35.10 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -4.18 Total: 11.21 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -4.39 Total: 1.47 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: 0.22 Total: -46.07 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: 0.13 Total: -15.15 kcal Atomic # 9 Polarization: -6.63 SS G_CDS: 0.11 Total: -6.52 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.24 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -27.69 -7.41 -35.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072285594.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.141 kcal (2) G-P(sol) polarization free energy of solvation -27.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds