Wall clock time and date at job start Tue Mar 31 2020 05:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52991 * 109.47307 * 2 1 4 4 C 1.53000 * 109.46954 * 239.99796 * 2 1 3 5 5 N 1.46502 * 109.46700 * 120.00350 * 2 1 3 6 6 C 1.35804 * 124.95101 * 359.68655 * 5 2 1 7 7 C 1.36672 * 108.40669 * 179.87106 * 6 5 2 8 8 C 1.43197 * 126.86043 * 180.15329 * 7 6 5 9 9 N 6.05074 * 87.58678 * 119.98350 * 2 1 3 10 10 C 1.46678 * 106.28006 * 0.38654 * 7 6 5 11 11 C 1.35248 * 106.45244 * 359.76303 * 10 7 6 12 12 N 1.39652 * 125.62113 * 179.97438 * 11 10 7 13 13 C 1.34772 * 120.00133 * 0.02884 * 12 11 10 14 14 O 1.21296 * 120.00171 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00033 * 180.02562 * 13 12 11 16 16 O 1.42903 * 109.47199 * 179.97438 * 15 13 12 17 17 C 1.35672 * 116.99989 * 179.97438 * 16 15 13 18 18 C 1.39311 * 119.81750 * 359.72173 * 17 16 15 19 19 C 1.36440 * 120.18437 * 179.75858 * 18 17 16 20 20 C 1.40835 * 119.81176 * 0.51680 * 19 18 17 21 21 C 1.41215 * 120.17973 * 179.71994 * 20 19 18 22 22 H 1.07995 * 119.99987 * 155.17026 * 21 20 19 23 23 C 1.39892 * 120.00015 * 335.16155 * 21 20 19 24 24 N 1.30886 * 119.99933 * 342.16552 * 23 21 20 25 25 Si 1.86800 * 119.99932 * 162.15719 * 23 21 20 26 26 H 1.48498 * 109.46691 * 94.66143 * 25 23 21 27 27 H 1.48491 * 109.47363 * 214.65897 * 25 23 21 28 28 H 1.48499 * 109.47348 * 334.66238 * 25 23 21 29 29 C 1.40829 * 119.64086 * 359.74198 * 20 19 18 30 30 C 1.36437 * 119.81343 * 359.97438 * 29 20 19 31 31 H 1.09005 * 109.46948 * 300.00369 * 1 2 3 32 32 H 1.09003 * 109.46552 * 59.99667 * 1 2 3 33 33 H 1.08996 * 109.47291 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47164 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.47586 * 299.99699 * 3 2 1 36 36 H 1.09005 * 109.47418 * 59.99919 * 3 2 1 37 37 H 1.08996 * 109.47064 * 300.00068 * 4 2 1 38 38 H 1.09000 * 109.47201 * 60.00085 * 4 2 1 39 39 H 1.09002 * 109.46738 * 180.02562 * 4 2 1 40 40 H 1.07999 * 125.79382 * 0.02867 * 6 5 2 41 41 H 1.08000 * 126.77450 * 179.74275 * 10 7 6 42 42 H 0.97001 * 119.99796 * 180.02562 * 12 11 10 43 43 H 1.09002 * 109.47094 * 299.99152 * 15 13 12 44 44 H 1.09000 * 109.47513 * 59.99387 * 15 13 12 45 45 H 1.07999 * 119.91182 * 0.02562 * 18 17 16 46 46 H 1.07998 * 120.09443 * 180.25464 * 19 18 17 47 47 H 0.96994 * 119.99553 * 179.97438 * 24 23 21 48 48 H 1.07996 * 120.09656 * 179.97438 * 29 20 19 49 49 H 1.07998 * 119.91105 * 179.97438 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6907 1.1962 6 6 1.2281 -1.2377 2.1557 7 6 2.0317 -1.7949 3.1106 8 6 1.6099 -2.4787 4.2959 9 7 1.2753 -3.0212 5.2363 10 6 3.4123 -1.5477 2.6815 11 6 3.3350 -0.8730 1.5119 12 7 4.4218 -0.4345 0.7525 13 6 5.6792 -0.6771 1.1726 14 8 5.8669 -1.2759 2.2106 15 6 6.8520 -0.2034 0.3534 16 8 8.0688 -0.5777 1.0026 17 6 9.2272 -0.2245 0.3909 18 6 9.1894 0.4664 -0.8182 19 6 10.3497 0.8296 -1.4373 20 6 11.5880 0.4945 -0.8561 21 6 12.7937 0.8614 -1.4932 22 1 13.6967 0.9801 -0.9128 23 6 12.8185 1.0708 -2.8761 24 7 11.8532 0.6032 -3.6262 25 14 14.2292 2.0180 -3.6522 26 1 15.2631 1.0642 -4.1281 27 1 13.7208 2.8105 -4.8005 28 1 14.8250 2.9321 -2.6450 29 6 11.6173 -0.2087 0.3637 30 6 10.4479 -0.5594 0.9728 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 3.1301 1.4424 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6768 1.9563 0.8900 37 1 1.6767 -1.7489 -1.2492 38 1 1.6767 -0.2075 -2.1392 39 1 3.1301 -0.7217 -1.2490 40 1 0.1482 -1.2353 2.1617 41 1 4.3130 -1.8453 3.1979 42 1 4.2718 0.0447 -0.0775 43 1 6.8123 -0.6598 -0.6357 44 1 6.8120 0.8814 0.2548 45 1 8.2390 0.7190 -1.2647 46 1 10.3187 1.3687 -2.3726 47 1 11.8702 0.7487 -4.5850 48 1 12.5628 -0.4698 0.8157 49 1 10.4686 -1.0991 1.9080 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078665231.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:46 Heat of formation + Delta-G solvation = 38.217584 kcal Electronic energy + Delta-G solvation = -31632.912358 eV Core-core repulsion = 27333.893492 eV Total energy + Delta-G solvation = -4299.018865 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.168 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.20273 -39.91531 -38.58516 -37.24785 -36.41828 -36.09367 -34.91937 -33.42632 -30.55017 -30.20244 -29.69303 -29.12841 -28.13893 -28.10238 -27.19367 -24.80068 -23.40694 -22.62785 -21.41781 -20.87961 -20.12156 -20.00090 -18.41278 -17.57082 -17.33706 -16.79164 -16.30231 -16.12601 -15.91458 -15.73693 -15.33387 -14.89224 -14.59077 -14.47462 -14.05105 -14.01447 -13.88198 -13.61433 -13.55479 -13.36113 -13.06982 -12.89584 -12.74461 -12.73260 -12.55064 -12.50902 -12.46097 -12.05742 -11.96779 -11.84020 -11.70690 -11.63309 -11.58915 -11.19420 -11.07576 -10.83198 -10.69836 -10.08524 -9.88467 -9.83267 -9.44090 -9.09214 -8.87963 -7.96370 -7.73971 -7.10599 -6.80723 -4.32637 1.39993 1.86049 1.91374 2.60264 2.67865 2.70780 2.71186 2.89614 3.03759 3.07633 3.15617 3.58250 3.77792 3.89660 4.00652 4.04139 4.11808 4.21492 4.42668 4.51631 4.53981 4.80422 4.80700 4.94268 4.99030 5.01911 5.06141 5.18278 5.20449 5.21587 5.29733 5.38850 5.48198 5.50778 5.59709 5.71074 5.84971 5.96903 6.20668 6.31553 6.57878 6.63872 6.81396 6.90228 6.99183 7.14397 7.19829 7.31930 7.48022 7.58525 7.78895 7.89387 7.93905 8.07027 8.32909 8.55703 8.82971 8.90438 10.14306 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.015372 B = 0.001789 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.098018 B =15647.760442 C =17198.124435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.146 3.854 3 C -0.165 4.165 4 C -0.165 4.165 5 N -0.443 5.443 6 C 0.066 3.934 7 C -0.118 4.118 8 C 0.297 3.703 9 N -0.445 5.445 10 C -0.161 4.161 11 C 0.258 3.742 12 N -0.654 5.654 13 C 0.520 3.480 14 O -0.483 6.483 15 C 0.058 3.942 16 O -0.302 6.302 17 C -0.016 4.016 18 C -0.174 4.174 19 C -0.135 4.135 20 C 0.089 3.911 21 C -0.461 4.461 22 H 0.078 0.922 23 C 0.075 3.925 24 N -0.799 5.799 25 Si 0.907 3.093 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.261 1.261 29 C -0.195 4.195 30 C -0.105 4.105 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.062 0.938 40 H 0.179 0.821 41 H 0.176 0.824 42 H 0.407 0.593 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.094 0.906 46 H 0.122 0.878 47 H 0.279 0.721 48 H 0.102 0.898 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.494 3.192 -1.670 23.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.063 3.937 3 C -0.223 4.223 4 C -0.223 4.223 5 N -0.125 5.125 6 C -0.069 4.069 7 C -0.130 4.130 8 C -0.017 4.017 9 N -0.122 5.122 10 C -0.188 4.188 11 C 0.057 3.943 12 N -0.305 5.305 13 C 0.307 3.693 14 O -0.353 6.353 15 C -0.022 4.022 16 O -0.217 6.217 17 C -0.059 4.059 18 C -0.193 4.193 19 C -0.154 4.154 20 C 0.087 3.913 21 C -0.491 4.491 22 H 0.096 0.904 23 C -0.142 4.142 24 N -0.425 5.425 25 Si 0.731 3.269 26 H -0.196 1.196 27 H -0.201 1.201 28 H -0.184 1.184 29 C -0.214 4.214 30 C -0.124 4.124 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.196 0.804 41 H 0.193 0.807 42 H 0.246 0.754 43 H 0.104 0.896 44 H 0.104 0.896 45 H 0.112 0.888 46 H 0.139 0.861 47 H 0.090 0.910 48 H 0.120 0.880 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -23.926 1.981 0.135 24.008 hybrid contribution 0.565 1.005 -1.709 2.062 sum -23.361 2.986 -1.574 23.604 Atomic orbital electron populations 1.22151 0.91502 1.03748 1.04069 1.21029 0.96303 0.92705 0.83633 1.22317 1.01930 0.93874 1.04131 1.22315 1.01943 1.01776 0.96217 1.43999 1.03725 1.45668 1.19156 1.21563 0.96346 1.00133 0.88858 1.16087 0.93837 1.09701 0.93352 1.24659 0.92920 0.92265 0.91896 1.81248 1.08478 1.11256 1.11218 1.22302 0.95957 1.05044 0.95520 1.16886 0.78614 1.04436 0.94348 1.43029 1.03538 1.58294 1.25645 1.20527 0.82535 0.79681 0.86545 1.90673 1.84142 1.37562 1.22962 1.21960 0.84079 1.00692 0.95421 1.85908 1.10769 1.77117 1.47899 1.18558 0.83864 1.07906 0.95552 1.20557 0.98235 1.04555 0.95905 1.20918 0.91013 1.02577 1.00939 1.17619 0.93319 0.89386 0.91014 1.19489 0.96136 1.41259 0.92173 0.90399 1.25885 0.97070 0.93623 0.97608 1.69836 1.31761 1.34301 1.06611 0.86325 0.81243 0.80300 0.79031 1.19600 1.20118 1.18439 1.20620 0.95497 1.05565 0.99762 1.19632 0.89951 1.03080 0.99704 0.90986 0.89911 0.90971 0.91879 0.89849 0.90956 0.90941 0.89842 0.91868 0.80369 0.80661 0.75433 0.89567 0.89635 0.88828 0.86068 0.90977 0.88024 0.88201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.34 7.31 37.16 0.27 -0.07 16 2 C 0.15 0.59 1.05 -131.82 -0.14 0.45 16 3 C -0.16 -0.60 8.45 37.15 0.31 -0.29 16 4 C -0.16 -0.62 8.45 37.16 0.31 -0.30 16 5 N -0.44 -3.11 2.60 -101.88 -0.26 -3.37 16 6 C 0.07 0.48 10.24 -16.36 -0.17 0.31 16 7 C -0.12 -1.24 6.12 -105.13 -0.64 -1.88 16 8 C 0.30 3.66 15.87 -22.47 -0.36 3.31 16 9 N -0.45 -6.41 18.54 41.84 0.78 -5.64 16 10 C -0.16 -1.98 9.89 -37.24 -0.37 -2.35 16 11 C 0.26 2.60 6.92 -152.05 -1.05 1.55 16 12 N -0.65 -6.20 4.63 -11.30 -0.05 -6.25 16 13 C 0.52 6.98 7.87 -10.99 -0.09 6.89 16 14 O -0.48 -8.38 13.58 -14.36 -0.20 -8.57 16 15 C 0.06 0.81 5.21 36.01 0.19 1.00 16 16 O -0.30 -5.98 9.65 -38.63 -0.37 -6.35 16 17 C -0.02 -0.35 6.71 -38.78 -0.26 -0.61 16 18 C -0.17 -3.74 8.96 -39.83 -0.36 -4.10 16 19 C -0.14 -3.30 8.64 -39.25 -0.34 -3.64 16 20 C 0.09 2.28 5.57 -106.80 -0.59 1.69 16 21 C -0.46 -11.80 9.04 -37.83 -0.34 -12.14 16 22 H 0.08 1.92 7.91 -52.49 -0.41 1.51 16 23 C 0.07 1.81 5.13 -17.34 -0.09 1.72 16 24 N -0.80 -19.78 10.97 55.55 0.61 -19.17 16 25 Si 0.91 18.00 29.60 -169.99 -5.03 12.97 16 26 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 27 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 28 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 29 C -0.19 -4.66 9.74 -39.25 -0.38 -5.05 16 30 C -0.10 -2.39 9.92 -39.83 -0.40 -2.78 16 31 H 0.07 0.14 7.78 -51.93 -0.40 -0.26 16 32 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16 33 H 0.07 0.15 7.80 -51.93 -0.41 -0.26 16 34 H 0.06 0.27 5.74 -51.93 -0.30 -0.03 16 35 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 36 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 39 H 0.06 0.28 5.74 -51.93 -0.30 -0.02 16 40 H 0.18 0.70 6.99 -52.49 -0.37 0.34 16 41 H 0.18 2.62 5.80 -52.49 -0.30 2.31 16 42 H 0.41 2.58 4.74 -40.82 -0.19 2.39 16 43 H 0.09 1.05 7.63 -51.93 -0.40 0.66 16 44 H 0.09 1.01 7.66 -51.93 -0.40 0.62 16 45 H 0.09 1.66 6.27 -52.49 -0.33 1.33 16 46 H 0.12 3.03 6.18 -52.49 -0.32 2.70 16 47 H 0.28 6.27 8.30 -40.82 -0.34 5.94 16 48 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 49 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 407.34 15.07 6.14 6.14 Total: -1.00 -32.37 407.34 -9.10 -41.48 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -6.23 Total: 5.05 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: -4.48 Total: -16.28 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: 1.07 Total: -34.43 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.57 Total: -14.93 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.37 -9.10 -41.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078665231.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.695 kcal (2) G-P(sol) polarization free energy of solvation -32.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds