Wall clock time and date at job start Tue Mar 31 2020 06:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99617 * 2 1 4 4 H 1.48508 * 109.46972 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47149 * 299.99694 * 3 2 1 6 6 H 1.48502 * 109.47415 * 60.00426 * 3 2 1 7 7 C 1.37878 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99247 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00137 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47078 * 179.97438 * 9 7 2 11 11 C 1.34772 * 120.00174 * 269.99951 * 10 9 7 12 12 O 1.21299 * 120.00271 * 184.73092 * 11 10 9 13 13 C 1.50702 * 120.00114 * 4.73739 * 11 10 9 14 14 C 1.53001 * 109.47289 * 179.97438 * 13 11 10 15 15 C 1.50693 * 109.47094 * 180.02562 * 14 13 11 16 16 C 1.38682 * 120.41338 * 269.71738 * 15 14 13 17 17 C 1.38635 * 118.41546 * 179.78384 * 16 15 14 18 18 C 1.38226 * 119.16185 * 0.51256 * 17 16 15 19 19 N 1.31852 * 120.76455 * 359.73032 * 18 17 16 20 20 C 1.31890 * 121.72805 * 359.97438 * 19 18 17 21 21 C 1.40104 * 119.99947 * 90.00059 * 10 9 7 22 22 C 1.38850 * 120.01739 * 67.87547 * 21 10 9 23 23 C 1.38123 * 120.03496 * 179.75186 * 22 21 10 24 24 C 1.38715 * 120.16477 * 0.24792 * 23 22 21 25 25 C 1.38990 * 119.93006 * 359.94084 * 24 23 22 26 26 C 1.38645 * 119.88814 * 0.11781 * 25 24 23 27 27 O 1.36115 * 120.78048 * 180.20114 * 25 24 23 28 28 C 1.43176 * 116.71621 * 342.72286 * 27 25 24 29 29 C 1.53474 * 108.22695 * 46.27224 * 28 27 25 30 30 O 1.36198 * 119.31747 * 179.80814 * 24 23 22 31 31 H 0.96995 * 120.00174 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.47232 * 59.99795 * 9 7 2 33 33 H 1.08996 * 109.47675 * 299.99723 * 9 7 2 34 34 H 1.09002 * 109.46771 * 299.99695 * 13 11 10 35 35 H 1.08997 * 109.47084 * 59.99554 * 13 11 10 36 36 H 1.09002 * 109.47063 * 299.99636 * 14 13 11 37 37 H 1.08997 * 109.46902 * 59.99489 * 14 13 11 38 38 H 1.07989 * 120.79287 * 0.02562 * 16 15 14 39 39 H 1.07999 * 120.41769 * 180.21863 * 17 16 15 40 40 H 1.08001 * 119.61941 * 179.74694 * 18 17 16 41 41 H 1.07997 * 119.61915 * 179.97438 * 20 19 18 42 42 H 1.08001 * 119.97802 * 0.03290 * 22 21 10 43 43 H 1.08002 * 119.91880 * 180.26619 * 23 22 21 44 44 H 1.07999 * 119.99693 * 179.88702 * 26 25 24 45 45 H 1.08995 * 109.71112 * 286.58780 * 28 27 25 46 46 H 1.08999 * 109.70971 * 165.95463 * 28 27 25 47 47 H 1.09000 * 109.70838 * 180.54599 * 29 28 27 48 48 H 1.09001 * 109.74435 * 59.94034 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.6410 -4.1248 -1.1666 12 8 3.3614 -5.1007 -1.1684 13 6 2.2358 -3.4851 -2.4695 14 6 2.8644 -4.2548 -3.6329 15 6 2.4597 -3.6146 -4.9357 16 6 1.3128 -4.0300 -5.5956 17 6 0.9770 -3.4094 -6.7890 18 6 1.7964 -2.4120 -7.2833 19 7 2.8823 -2.0461 -6.6311 20 6 3.2295 -2.6102 -5.4906 21 6 2.6583 -4.1451 1.2139 22 6 1.7826 -4.8347 2.0418 23 6 2.2322 -5.3642 3.2357 24 6 3.5573 -5.2047 3.6139 25 6 4.4352 -4.5114 2.7890 26 6 3.9833 -3.9790 1.5913 27 8 5.7399 -4.3481 3.1411 28 6 6.0676 -4.5689 4.5173 29 6 5.3954 -5.8731 4.9676 30 8 3.9812 -5.7305 4.7966 31 1 -0.4850 0.8400 0.0004 32 1 0.6247 -2.5571 -0.8897 33 1 0.6241 -2.5568 0.8902 34 1 1.1501 -3.5074 -2.5630 35 1 2.5810 -2.4514 -2.4895 36 1 3.9501 -4.2320 -3.5392 37 1 2.5196 -5.2886 -3.6130 38 1 0.6940 -4.8153 -5.1876 39 1 0.0890 -3.7050 -7.3280 40 1 1.5440 -1.9264 -8.2144 41 1 4.1265 -2.2842 -4.9852 42 1 0.7505 -4.9611 1.7500 43 1 1.5505 -5.9040 3.8762 44 1 4.6635 -3.4385 0.9498 45 1 5.7004 -3.7387 5.1204 46 1 7.1485 -4.6550 4.6285 47 1 5.6218 -6.0599 6.0173 48 1 5.7574 -6.7027 4.3603 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079000424.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:03 Heat of formation + Delta-G solvation = -46.328997 kcal Electronic energy + Delta-G solvation = -32722.386924 eV Core-core repulsion = 28321.983182 eV Total energy + Delta-G solvation = -4400.403742 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 368.157 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.07828 -40.16275 -39.54526 -37.30785 -37.08473 -34.88414 -34.31922 -32.64518 -31.97900 -30.90214 -30.39063 -29.58291 -28.07929 -27.04067 -25.16488 -24.33819 -23.48360 -23.05850 -22.57901 -21.61939 -20.61411 -19.01866 -18.24691 -17.27235 -17.19417 -16.99678 -16.51827 -16.36656 -16.18783 -15.79474 -15.22908 -14.88872 -14.85874 -14.74931 -14.40715 -14.27382 -13.95178 -13.87425 -13.58538 -13.45564 -13.15076 -12.98886 -12.81990 -12.70137 -12.36579 -12.24944 -11.90302 -11.77038 -11.52126 -11.40620 -11.09586 -11.05085 -10.93276 -10.78181 -10.66335 -10.38852 -10.24106 -9.85721 -9.72452 -9.38239 -9.27601 -8.82982 -8.61600 -8.45780 -8.14398 -7.50714 -6.23951 -4.31127 1.17602 1.34952 1.55768 1.62342 3.09623 3.17594 3.20261 3.29287 3.32167 3.33993 3.72835 3.93119 4.01812 4.24951 4.30801 4.51719 4.76551 4.81597 4.84788 4.86488 4.87054 5.05938 5.09749 5.10844 5.17425 5.35886 5.39516 5.41779 5.49021 5.50764 5.55387 5.68812 5.74198 5.81340 6.00440 6.09231 6.11739 6.15747 6.16533 6.38684 6.42594 6.49895 6.58069 6.78075 6.81859 6.86641 7.02513 7.10265 7.47404 7.62771 7.71566 7.96244 8.04419 8.11952 8.70773 8.87616 9.36953 10.83054 Molecular weight = 368.16amu Principal moments of inertia in cm(-1) A = 0.008538 B = 0.002884 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3278.783563 B = 9705.285231 C =11551.567546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.068 3.932 3 Si 0.894 3.106 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.538 4.538 8 H 0.063 0.937 9 C 0.239 3.761 10 N -0.559 5.559 11 C 0.522 3.478 12 O -0.559 6.559 13 C -0.127 4.127 14 C -0.061 4.061 15 C -0.123 4.123 16 C -0.073 4.073 17 C -0.172 4.172 18 C 0.086 3.914 19 N -0.485 5.485 20 C 0.103 3.897 21 C 0.183 3.817 22 C -0.118 4.118 23 C -0.104 4.104 24 C 0.033 3.967 25 C 0.058 3.942 26 C -0.099 4.099 27 O -0.307 6.307 28 C 0.021 3.979 29 C 0.022 3.978 30 O -0.310 6.310 31 H 0.265 0.735 32 H 0.044 0.956 33 H 0.040 0.960 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.151 0.849 41 H 0.155 0.845 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.132 0.868 45 H 0.076 0.924 46 H 0.118 0.882 47 H 0.117 0.883 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.496 -10.050 -0.191 11.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.135 4.135 3 Si 0.722 3.278 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.576 4.576 8 H 0.081 0.919 9 C 0.121 3.879 10 N -0.287 5.287 11 C 0.312 3.688 12 O -0.439 6.439 13 C -0.166 4.166 14 C -0.100 4.100 15 C -0.125 4.125 16 C -0.099 4.099 17 C -0.192 4.192 18 C -0.071 4.071 19 N -0.193 5.193 20 C -0.054 4.054 21 C 0.091 3.909 22 C -0.137 4.137 23 C -0.123 4.123 24 C -0.011 4.011 25 C 0.013 3.987 26 C -0.119 4.119 27 O -0.222 6.222 28 C -0.055 4.055 29 C -0.054 4.054 30 O -0.225 6.225 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.111 0.889 35 H 0.127 0.873 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.169 0.831 41 H 0.173 0.827 42 H 0.151 0.849 43 H 0.152 0.848 44 H 0.150 0.850 45 H 0.094 0.906 46 H 0.135 0.865 47 H 0.135 0.865 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.252 -9.746 -0.540 11.084 hybrid contribution -0.132 0.566 0.640 0.864 sum 5.119 -9.180 0.100 10.512 Atomic orbital electron populations 1.69916 1.05992 1.27332 1.49539 1.24901 0.94835 0.99251 0.94550 0.86486 0.80263 0.83267 0.77824 1.19539 1.20710 1.20802 1.21455 0.93682 0.90214 1.52298 0.91905 1.19607 0.87143 0.82058 0.99140 1.45990 1.45607 1.34880 1.02228 1.20627 0.79533 0.83061 0.85532 1.90647 1.38403 1.26946 1.87868 1.21601 1.02712 1.01881 0.90449 1.20321 1.01829 0.98923 0.88909 1.20986 0.95959 0.97834 0.97751 1.21534 0.95537 0.98650 0.94216 1.22109 1.01254 0.98435 0.97403 1.22703 0.90600 0.94619 0.99148 1.67676 1.16687 1.26773 1.08163 1.22734 0.99076 0.92098 0.91455 1.17147 0.91262 0.94753 0.87706 1.20988 1.00361 0.98242 0.94154 1.20154 0.92813 1.02457 0.96882 1.18771 0.94444 0.99862 0.88021 1.18586 0.83786 1.00057 0.96262 1.20450 0.95946 1.00422 0.95106 1.86315 1.22767 1.86524 1.26601 1.23579 1.02058 0.97736 0.82122 1.23554 0.80357 0.97759 1.03742 1.86284 1.23258 1.79645 1.33342 0.92488 0.93780 0.94175 0.88852 0.87289 0.90022 0.90312 0.84862 0.85026 0.83146 0.82726 0.84894 0.84806 0.84960 0.90612 0.86455 0.86499 0.90768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.98 13.29 55.43 0.74 -23.24 16 2 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.89 20.47 29.54 -169.99 -5.02 15.45 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 7 C -0.54 -13.58 9.16 -34.44 -0.32 -13.89 16 8 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 9 C 0.24 5.44 4.88 -5.20 -0.03 5.42 16 10 N -0.56 -11.55 2.51 -114.73 -0.29 -11.84 16 11 C 0.52 10.28 7.53 -10.99 -0.08 10.20 16 12 O -0.56 -11.96 15.75 5.54 0.09 -11.87 16 13 C -0.13 -2.12 4.35 -27.88 -0.12 -2.24 16 14 C -0.06 -0.87 4.66 -27.89 -0.13 -1.00 16 15 C -0.12 -1.66 5.15 -104.48 -0.54 -2.20 16 16 C -0.07 -0.88 9.86 -39.27 -0.39 -1.27 16 17 C -0.17 -1.89 10.11 -39.44 -0.40 -2.29 16 18 C 0.09 1.04 11.18 -17.55 -0.20 0.85 16 19 N -0.48 -7.07 10.36 -13.25 -0.14 -7.20 16 20 C 0.10 1.46 10.86 -17.55 -0.19 1.27 16 21 C 0.18 3.66 4.75 -83.66 -0.40 3.27 16 22 C -0.12 -2.07 9.68 -39.40 -0.38 -2.45 16 23 C -0.10 -1.66 9.95 -39.45 -0.39 -2.05 16 24 C 0.03 0.56 6.49 -39.13 -0.25 0.30 16 25 C 0.06 1.04 6.49 -39.15 -0.25 0.79 16 26 C -0.10 -1.96 9.47 -39.24 -0.37 -2.33 16 27 O -0.31 -4.92 10.42 -32.89 -0.34 -5.27 16 28 C 0.02 0.23 7.26 37.40 0.27 0.50 16 29 C 0.02 0.22 7.26 37.40 0.27 0.49 16 30 O -0.31 -4.46 10.42 -33.16 -0.35 -4.80 16 31 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 32 H 0.04 1.01 6.47 -51.93 -0.34 0.67 16 33 H 0.04 0.97 7.86 -51.93 -0.41 0.56 16 34 H 0.09 1.51 7.26 -51.93 -0.38 1.13 16 35 H 0.11 1.96 7.91 -51.93 -0.41 1.55 16 36 H 0.08 1.17 8.05 -51.93 -0.42 0.75 16 37 H 0.08 1.09 8.05 -51.93 -0.42 0.67 16 38 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 41 H 0.16 1.98 8.06 -52.49 -0.42 1.56 16 42 H 0.13 2.13 8.06 -52.49 -0.42 1.71 16 43 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 44 H 0.13 2.70 8.06 -52.49 -0.42 2.28 16 45 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.12 0.78 8.14 -51.93 -0.42 0.35 16 48 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 408.86 15.07 6.16 6.16 Total: -1.00 -31.80 408.86 -9.70 -41.50 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -6.56 Total: 6.09 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -3.99 Total: -4.98 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: 0.31 Total: -42.29 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.60 Total: -21.94 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -31.80 -9.70 -41.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079000424.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.826 kcal (2) G-P(sol) polarization free energy of solvation -31.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds