Wall clock time and date at job start Tue Mar 31 2020 05:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38220 * 119.99207 * 2 1 4 4 C 1.38730 * 120.21499 * 179.97438 * 3 2 1 5 5 C 1.39003 * 119.89905 * 359.97438 * 4 3 2 6 6 C 1.39101 * 119.53802 * 359.87577 * 5 4 3 7 7 C 1.38192 * 120.23330 * 0.35923 * 6 5 4 8 8 Br 1.89091 * 119.95023 * 179.82841 * 7 6 5 9 9 N 1.39850 * 121.86669 * 180.29152 * 5 4 3 10 10 C 1.46900 * 110.99665 * 104.76186 * 9 5 4 11 11 C 1.50699 * 109.46983 * 158.74614 * 10 9 5 12 12 O 1.21291 * 119.99865 * 354.36031 * 11 10 9 13 13 N 1.34781 * 119.99919 * 174.36064 * 11 10 9 14 14 C 1.37100 * 119.99819 * 179.97438 * 13 11 10 15 15 H 1.07998 * 119.99884 * 359.97438 * 14 13 11 16 16 C 1.38945 * 119.99615 * 179.97438 * 14 13 11 17 17 N 1.31417 * 120.00546 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99819 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47172 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47418 * 120.00031 * 18 16 14 21 21 H 1.48505 * 109.47055 * 239.99900 * 18 16 14 22 22 C 1.46757 * 112.12538 * 339.98039 * 9 5 4 23 23 C 1.53423 * 108.59607 * 50.26191 * 22 9 5 24 24 H 1.08994 * 109.77608 * 56.31941 * 23 22 9 25 25 C 1.53000 * 109.77501 * 177.12071 * 23 22 9 26 26 O 1.36168 * 118.73057 * 179.79357 * 4 3 2 27 27 H 1.09002 * 109.46692 * 270.01899 * 1 2 3 28 28 H 1.09006 * 109.47096 * 30.01354 * 1 2 3 29 29 H 1.08989 * 109.47625 * 150.01930 * 1 2 3 30 30 H 1.07996 * 119.89037 * 359.95053 * 3 2 1 31 31 H 1.08000 * 119.88619 * 180.15473 * 6 5 4 32 32 H 1.09005 * 109.46771 * 278.74157 * 10 9 5 33 33 H 1.08996 * 109.47568 * 38.73930 * 10 9 5 34 34 H 0.97000 * 119.99799 * 359.97438 * 13 11 10 35 35 H 0.96995 * 119.99837 * 179.97438 * 17 16 14 36 36 H 1.09008 * 109.61246 * 290.53199 * 22 9 5 37 37 H 1.08996 * 109.76389 * 170.08561 * 22 9 5 38 38 H 1.09000 * 109.47019 * 178.44345 * 25 23 22 39 39 H 1.09000 * 109.47066 * 298.44522 * 25 23 22 40 40 H 1.08998 * 109.47077 * 58.44198 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1971 0.0000 4 6 3.5852 1.2025 0.0005 5 6 4.2828 0.0002 0.0016 6 6 3.5802 -1.2003 0.0048 7 6 2.1983 -1.1978 -0.0007 8 35 1.2512 -2.8344 -0.0012 9 7 5.6806 -0.0424 0.0082 10 6 6.1898 -0.4102 1.3362 11 6 7.5909 -0.9495 1.2053 12 8 8.0762 -1.1164 0.1063 13 7 8.3046 -1.2462 2.3094 14 6 9.5791 -1.7373 2.1903 15 1 10.0109 -1.8868 1.2118 16 6 10.3150 -2.0428 3.3286 17 7 9.7897 -1.8605 4.5193 18 14 12.0518 -2.7112 3.1664 19 1 12.4070 -2.8229 1.7288 20 1 13.0016 -1.7907 3.8414 21 1 12.1272 -4.0522 3.8000 22 6 6.2742 1.2184 -0.4520 23 6 5.6286 2.3746 0.3227 24 1 5.7536 2.2161 1.3938 25 6 6.2791 3.6980 -0.0851 26 8 4.2351 2.3991 -0.0038 27 1 -0.3633 0.0003 1.0277 28 1 -0.3633 0.8899 -0.5141 29 1 -0.3634 -0.8900 -0.5135 30 1 1.6560 2.1313 -0.0008 31 1 4.1165 -2.1377 0.0082 32 1 6.1979 0.4702 1.9788 33 1 5.5461 -1.1733 1.7736 34 1 7.9165 -1.1123 3.1883 35 1 10.3034 -2.0741 5.3139 36 1 6.0872 1.3430 -1.5186 37 1 7.3484 1.2090 -0.2675 38 1 5.7983 4.5186 0.4474 39 1 7.3396 3.6741 0.1657 40 1 6.1630 3.8442 -1.1590 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083403435.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:52 Heat of formation + Delta-G solvation = -36.852391 kcal Electronic energy + Delta-G solvation = -25155.600301 eV Core-core repulsion = 21402.913865 eV Total energy + Delta-G solvation = -3752.686436 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 368.052 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.34059 -38.44779 -38.07615 -36.16186 -33.93857 -33.29199 -31.88864 -31.34840 -30.97838 -28.95702 -28.08763 -26.74355 -25.03880 -23.66669 -22.93045 -22.51308 -20.13103 -19.04018 -17.95465 -17.79837 -16.92759 -16.67934 -15.89900 -15.29864 -14.87412 -14.69568 -14.47571 -14.41767 -14.04472 -13.94396 -13.67769 -13.46884 -13.15044 -12.77155 -12.66003 -12.44746 -12.22507 -12.13720 -11.76245 -11.64759 -11.57938 -11.55128 -11.36376 -11.09386 -10.94884 -10.38650 -10.29324 -10.27371 -10.17281 -9.57373 -9.44053 -8.50382 -8.25409 -8.03630 -7.79827 -6.47819 -3.89097 1.03665 1.13829 1.59780 3.03431 3.12090 3.23588 3.29766 3.37048 3.67373 3.79706 4.15041 4.38343 4.67492 4.70271 4.81094 4.82498 4.91256 5.01630 5.16468 5.17671 5.28471 5.39684 5.44601 5.47517 5.57167 5.60023 5.69585 5.79595 5.80384 5.83375 5.90898 5.99944 6.10720 6.15552 6.20429 6.39478 6.86858 7.05876 7.39558 7.49745 7.98632 8.53538 9.11291 9.45885 9.96773 10.69698 Molecular weight = 368.05amu Principal moments of inertia in cm(-1) A = 0.010941 B = 0.003039 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.484680 B = 9210.567912 C =11210.190377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.043 4.043 3 C -0.132 4.132 4 C 0.108 3.892 5 C 0.038 3.962 6 C -0.052 4.052 7 C -0.111 4.111 8 Br -0.051 7.051 9 N -0.460 5.460 10 C 0.044 3.956 11 C 0.441 3.559 12 O -0.573 6.573 13 N -0.561 5.561 14 C -0.300 4.300 15 H 0.105 0.895 16 C 0.024 3.976 17 N -0.900 5.900 18 Si 0.929 3.071 19 H -0.267 1.267 20 H -0.281 1.281 21 H -0.281 1.281 22 C 0.030 3.970 23 C 0.043 3.957 24 H 0.077 0.923 25 C -0.140 4.140 26 O -0.306 6.306 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.137 0.863 31 H 0.142 0.858 32 H 0.058 0.942 33 H 0.095 0.905 34 H 0.392 0.608 35 H 0.272 0.728 36 H 0.092 0.908 37 H 0.111 0.889 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.924 6.444 -5.939 20.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.045 4.045 3 C -0.151 4.151 4 C 0.059 3.941 5 C -0.061 4.061 6 C -0.073 4.073 7 C -0.191 4.191 8 Br 0.034 6.966 9 N -0.175 5.175 10 C -0.085 4.085 11 C 0.225 3.775 12 O -0.457 6.457 13 N -0.198 5.198 14 C -0.429 4.429 15 H 0.122 0.878 16 C -0.178 4.178 17 N -0.541 5.541 18 Si 0.756 3.244 19 H -0.192 1.192 20 H -0.207 1.207 21 H -0.207 1.207 22 C -0.098 4.098 23 C -0.015 4.015 24 H 0.095 0.905 25 C -0.197 4.197 26 O -0.220 6.220 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.155 0.845 31 H 0.160 0.840 32 H 0.076 0.924 33 H 0.113 0.887 34 H 0.225 0.775 35 H 0.082 0.918 36 H 0.110 0.890 37 H 0.129 0.871 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.703 5.489 -6.855 20.662 hybrid contribution 0.892 0.481 1.152 1.534 sum -17.811 5.969 -5.703 19.632 Atomic orbital electron populations 1.20942 0.90028 1.03599 1.03088 1.19443 0.96350 0.90610 0.98145 1.20181 0.90483 0.98077 1.06401 1.19102 0.91900 0.84784 0.98275 1.18749 0.89143 0.92030 1.06148 1.20806 0.91422 0.97969 0.97117 1.21338 0.94086 0.91106 1.12547 1.96637 1.75110 1.27005 1.97845 1.58539 1.01593 1.31569 1.25759 1.22174 0.97657 1.00858 0.87765 1.19587 0.86730 0.85525 0.85628 1.90544 1.71354 1.57857 1.25937 1.41862 1.14217 1.56722 1.07005 1.19748 0.89285 1.39010 0.94853 0.87767 1.25271 1.00346 0.97626 0.94590 1.69618 1.38362 1.48485 0.97623 0.85803 0.81516 0.78355 0.78700 1.19167 1.20727 1.20681 1.23018 1.01675 0.84863 1.00242 1.23259 0.79525 0.98773 0.99925 0.90474 1.21720 1.00701 0.94547 1.02781 1.86280 1.23934 1.27058 1.84692 0.90466 0.91056 0.90441 0.84529 0.84029 0.92418 0.88727 0.77487 0.91834 0.89015 0.87062 0.91427 0.89830 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 9.55 36.01 0.34 -0.67 16 2 C -0.04 -0.49 5.88 -104.61 -0.62 -1.11 16 3 C -0.13 -1.58 9.59 -39.41 -0.38 -1.96 16 4 C 0.11 1.53 6.47 -39.12 -0.25 1.27 16 5 C 0.04 0.58 5.09 -83.60 -0.43 0.15 16 6 C -0.05 -0.75 8.99 -39.28 -0.35 -1.10 16 7 C -0.11 -1.42 6.21 -39.58 -0.25 -1.67 16 8 Br -0.05 -0.58 31.77 -68.01 -2.16 -2.75 16 9 N -0.46 -7.83 4.13 -172.18 -0.71 -8.55 16 10 C 0.04 0.78 5.29 -4.98 -0.03 0.76 16 11 C 0.44 10.05 7.29 -10.98 -0.08 9.97 16 12 O -0.57 -15.05 15.17 5.55 0.08 -14.96 16 13 N -0.56 -13.78 5.29 -10.96 -0.06 -13.83 16 14 C -0.30 -8.12 9.68 -14.93 -0.14 -8.27 16 15 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 16 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 17 N -0.90 -23.96 13.05 55.50 0.72 -23.24 16 18 Si 0.93 20.63 29.55 -169.99 -5.02 15.60 16 19 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 C 0.03 0.45 5.00 -3.68 -0.02 0.44 16 23 C 0.04 0.55 3.44 -26.51 -0.09 0.46 16 24 H 0.08 1.02 6.55 -51.93 -0.34 0.68 16 25 C -0.14 -1.42 9.60 37.16 0.36 -1.06 16 26 O -0.31 -4.23 10.06 -20.28 -0.20 -4.43 16 27 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 29 H 0.08 0.65 6.64 -51.94 -0.34 0.31 16 30 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 31 H 0.14 2.14 8.06 -52.49 -0.42 1.71 16 32 H 0.06 0.92 6.36 -51.93 -0.33 0.59 16 33 H 0.09 1.57 7.43 -51.93 -0.39 1.19 16 34 H 0.39 9.23 7.90 -40.82 -0.32 8.91 16 35 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 36 H 0.09 1.37 8.14 -51.92 -0.42 0.94 16 37 H 0.11 1.87 6.93 -51.93 -0.36 1.51 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 350.12 15.07 5.28 5.28 Total: -1.00 -30.19 350.12 -9.07 -39.26 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -4.97 Total: 9.88 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -2.03 Total: -2.27 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: -0.04 Total: -45.62 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.12 Total: -19.40 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 35 Polarization: -0.58 SS G_CDS: -2.16 Total: -2.75 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.19 -9.07 -39.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083403435.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.412 kcal (2) G-P(sol) polarization free energy of solvation -30.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds