Wall clock time and date at job start Tue Mar 31 2020 06:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99854 * 2 1 4 4 H 1.48496 * 109.47482 * 270.00206 * 3 2 1 5 5 H 1.48504 * 109.46909 * 29.99915 * 3 2 1 6 6 H 1.48494 * 109.47316 * 149.99733 * 3 2 1 7 7 C 1.37874 * 120.00373 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00100 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00122 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47072 * 180.02562 * 9 7 2 11 11 C 1.46502 * 120.00217 * 89.99947 * 10 9 7 12 12 C 1.50703 * 109.46766 * 89.99836 * 11 10 9 13 13 C 1.34519 * 125.78904 * 90.00462 * 12 11 10 14 14 C 1.41380 * 106.84000 * 179.97438 * 13 12 11 15 15 C 1.34509 * 106.84218 * 359.97438 * 14 13 12 16 16 O 1.34305 * 125.79062 * 269.69154 * 12 11 10 17 17 C 1.34779 * 119.99755 * 270.00066 * 10 9 7 18 18 O 1.21586 * 120.00466 * 359.97438 * 17 10 9 19 19 N 1.34784 * 119.99707 * 180.02562 * 17 10 9 20 20 C 1.39981 * 120.00049 * 174.69345 * 19 17 10 21 21 C 1.39014 * 120.10330 * 146.86365 * 20 19 17 22 22 C 1.38115 * 120.41912 * 180.11925 * 21 20 19 23 23 C 1.38365 * 120.47079 * 359.92128 * 22 21 20 24 24 C 1.39619 * 119.36819 * 359.91599 * 23 22 21 25 25 C 1.38553 * 120.09680 * 326.59361 * 20 19 17 26 26 C 1.47624 * 120.10752 * 180.34083 * 24 23 22 27 27 O 1.21251 * 121.16918 * 168.62044 * 26 24 23 28 28 C 1.51470 * 117.65438 * 348.61537 * 26 24 23 29 29 C 1.53436 * 107.36951 * 42.48580 * 28 26 24 30 30 C 1.50446 * 119.05350 * 179.72994 * 23 22 21 31 31 H 0.96994 * 119.99996 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.47194 * 60.00226 * 9 7 2 33 33 H 1.08997 * 109.47107 * 299.99990 * 9 7 2 34 34 H 1.08998 * 109.47320 * 210.00011 * 11 10 9 35 35 H 1.08999 * 109.46979 * 330.00497 * 11 10 9 36 36 H 1.07995 * 126.57542 * 359.96416 * 13 12 11 37 37 H 1.07999 * 126.57991 * 179.97438 * 14 13 12 38 38 H 1.08000 * 125.78868 * 180.02562 * 15 14 13 39 39 H 0.97000 * 120.00122 * 354.68870 * 19 17 10 40 40 H 1.08001 * 119.79156 * 0.10276 * 21 20 19 41 41 H 1.08005 * 119.76419 * 179.89893 * 22 21 20 42 42 H 1.08000 * 120.14157 * 0.02562 * 25 20 19 43 43 H 1.09001 * 109.87716 * 283.02155 * 28 26 24 44 44 H 1.09004 * 109.87497 * 161.95019 * 28 26 24 45 45 H 1.09002 * 109.49179 * 176.01605 * 29 28 26 46 46 H 1.08998 * 109.50847 * 55.96787 * 29 28 26 47 47 H 1.09002 * 109.12036 * 277.97035 * 30 23 22 48 48 H 1.08998 * 109.11952 * 37.10720 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 4.0000 -2.5751 -0.0022 11 6 4.2437 -3.2649 -1.2715 12 6 5.6668 -3.0277 -1.7069 13 6 6.7250 -3.7951 -1.3893 14 6 7.8550 -3.2100 -2.0054 15 6 7.4198 -2.1203 -2.6630 16 8 6.0929 -2.0175 -2.4826 17 6 4.2251 -3.2112 1.1645 18 8 4.0233 -2.6386 2.2180 19 7 4.6749 -4.4817 1.1635 20 6 5.0144 -5.1050 2.3700 21 6 4.8135 -6.4713 2.5297 22 6 5.1438 -7.0925 3.7182 23 6 5.6804 -6.3641 4.7651 24 6 5.8876 -4.9922 4.6094 25 6 5.5568 -4.3630 3.4068 26 6 6.4662 -4.2007 5.7131 27 8 6.8435 -3.0618 5.5379 28 6 6.5718 -4.8615 7.0720 29 6 7.0666 -6.2963 6.8464 30 6 6.0229 -7.0721 6.0476 31 1 -0.4850 0.8400 -0.0004 32 1 3.8753 -0.6803 0.8889 33 1 3.8746 -0.6799 -0.8911 34 1 4.0768 -4.3342 -1.1418 35 1 3.5627 -2.8802 -2.0306 36 1 6.7134 -4.6870 -0.7805 37 1 8.8724 -3.5690 -1.9572 38 1 8.0328 -1.4449 -3.2413 39 1 4.7633 -4.9642 0.3267 40 1 4.3962 -7.0506 1.7193 41 1 4.9818 -8.1543 3.8313 42 1 5.7189 -3.3019 3.2873 43 1 5.5938 -4.8781 7.5530 44 1 7.2827 -4.3178 7.6942 45 1 7.2229 -6.7827 7.8093 46 1 8.0056 -6.2747 6.2933 47 1 5.1199 -7.1786 6.6488 48 1 6.4157 -8.0619 5.8152 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089797688.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:13 Heat of formation + Delta-G solvation = -11.084148 kcal Electronic energy + Delta-G solvation = -33228.237594 eV Core-core repulsion = 28829.362183 eV Total energy + Delta-G solvation = -4398.875411 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 368.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.47645 -40.77931 -39.78717 -38.12209 -36.22066 -35.33379 -34.02792 -32.92473 -32.53472 -31.26190 -30.44716 -29.95065 -28.24484 -27.36360 -25.65884 -23.83156 -23.32545 -22.22597 -21.70197 -21.52731 -20.74324 -19.52128 -19.34499 -18.09095 -17.44719 -17.12283 -16.73219 -16.29726 -15.84439 -15.75999 -15.45890 -15.12188 -14.80984 -14.72723 -14.49940 -14.29487 -13.96142 -13.84993 -13.62462 -13.43771 -13.29315 -13.03653 -12.79319 -12.76224 -12.68908 -12.38622 -12.26026 -11.91423 -11.82610 -11.56154 -11.44622 -11.36688 -11.07792 -11.04788 -10.56505 -10.25979 -10.01708 -9.86426 -9.65290 -9.61136 -9.48491 -8.97373 -8.59765 -8.48871 -8.11778 -7.79035 -6.09659 -4.08966 0.66813 1.33062 1.75106 2.36930 2.61735 2.98800 3.04262 3.29046 3.37719 3.42730 3.50993 3.86639 3.95743 4.24556 4.40320 4.42641 4.49623 4.68564 4.77590 4.83601 4.91971 4.99615 5.05032 5.09720 5.18339 5.19102 5.23547 5.31961 5.37418 5.45840 5.53759 5.61456 5.67138 5.76932 5.82202 5.83159 5.87850 5.91481 6.12710 6.20778 6.23103 6.36127 6.49485 6.53647 6.53955 6.85057 7.04518 7.09899 7.21495 7.35216 7.51846 7.58468 8.25783 8.44395 8.91491 8.99382 9.50221 11.03434 Molecular weight = 368.16amu Principal moments of inertia in cm(-1) A = 0.008331 B = 0.003172 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3359.999484 B = 8825.630919 C =10509.239357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.075 3.925 3 Si 0.872 3.128 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.531 4.531 8 H 0.076 0.924 9 C 0.230 3.770 10 N -0.595 5.595 11 C 0.187 3.813 12 C -0.021 4.021 13 C -0.206 4.206 14 C -0.216 4.216 15 C -0.041 4.041 16 O -0.165 6.165 17 C 0.704 3.296 18 O -0.556 6.556 19 N -0.694 5.694 20 C 0.167 3.833 21 C -0.121 4.121 22 C -0.113 4.113 23 C -0.062 4.062 24 C -0.149 4.149 25 C -0.062 4.062 26 C 0.397 3.603 27 O -0.447 6.447 28 C -0.164 4.164 29 C -0.113 4.113 30 C -0.082 4.082 31 H 0.265 0.735 32 H 0.045 0.955 33 H 0.030 0.970 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.200 0.800 39 H 0.401 0.599 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.149 0.851 43 H 0.102 0.898 44 H 0.092 0.908 45 H 0.078 0.922 46 H 0.069 0.931 47 H 0.082 0.918 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.393 -18.061 4.074 24.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.127 4.127 3 Si 0.698 3.302 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.569 4.569 8 H 0.094 0.906 9 C 0.110 3.890 10 N -0.329 5.329 11 C 0.062 3.938 12 C -0.074 4.074 13 C -0.226 4.226 14 C -0.235 4.235 15 C -0.110 4.110 16 O -0.060 6.060 17 C 0.406 3.594 18 O -0.430 6.430 19 N -0.343 5.343 20 C 0.071 3.929 21 C -0.142 4.142 22 C -0.131 4.131 23 C -0.063 4.063 24 C -0.151 4.151 25 C -0.082 4.082 26 C 0.274 3.726 27 O -0.321 6.321 28 C -0.201 4.201 29 C -0.150 4.150 30 C -0.119 4.119 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.114 0.886 35 H 0.128 0.872 36 H 0.160 0.840 37 H 0.163 0.837 38 H 0.216 0.784 39 H 0.238 0.762 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.166 0.834 43 H 0.120 0.880 44 H 0.111 0.889 45 H 0.097 0.903 46 H 0.088 0.912 47 H 0.101 0.899 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 16.034 -16.550 4.571 23.492 hybrid contribution 0.463 0.471 -0.609 0.898 sum 16.496 -16.078 3.962 23.374 Atomic orbital electron populations 1.69886 1.06163 1.27048 1.50268 1.24804 0.94742 0.98875 0.94312 0.86908 0.80746 0.83919 0.78609 1.19994 1.20856 1.18769 1.21297 0.88980 0.94931 1.51739 0.90588 1.19698 0.95638 0.75785 0.97874 1.47303 1.67252 1.16469 1.01876 1.19823 0.87881 0.97612 0.88497 1.23257 0.97981 0.89116 0.97000 1.21536 0.92095 1.03230 1.05765 1.21757 1.00066 0.98296 1.03361 1.24036 0.81663 1.00827 1.04460 1.84090 1.23382 1.43779 1.54766 1.15846 0.78126 0.80449 0.84969 1.90953 1.56904 1.65621 1.29535 1.42951 1.69464 1.14174 1.07756 1.17414 0.96947 0.91518 0.87017 1.21016 1.01245 0.93250 0.98703 1.20760 1.00262 0.99782 0.92333 1.19913 0.98332 0.92335 0.95748 1.20109 1.05145 0.93967 0.95878 1.21511 0.93837 1.01707 0.91176 1.22739 0.73744 0.86268 0.89843 1.90565 1.37839 1.18388 1.85347 1.22310 1.04308 0.97391 0.96119 1.21488 0.98891 0.93780 1.00869 1.20427 0.99602 0.98627 0.93253 0.92510 0.93754 0.95176 0.88636 0.87190 0.83992 0.83715 0.78351 0.76169 0.85348 0.85259 0.83384 0.87951 0.88918 0.90301 0.91231 0.89927 0.90132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.60 13.96 55.43 0.77 -26.82 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 3 Si 0.87 21.88 27.47 -169.99 -4.67 17.21 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.26 -6.55 6.54 56.52 0.37 -6.18 16 7 C -0.53 -15.15 9.94 -34.44 -0.34 -15.49 16 8 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 9 C 0.23 5.68 4.23 -5.19 -0.02 5.66 16 10 N -0.60 -12.16 2.44 -182.18 -0.44 -12.60 16 11 C 0.19 2.88 5.75 -5.19 -0.03 2.85 16 12 C -0.02 -0.32 6.90 -35.62 -0.25 -0.56 16 13 C -0.21 -2.69 10.68 -39.70 -0.42 -3.12 16 14 C -0.22 -2.60 10.91 -39.71 -0.43 -3.03 16 15 C -0.04 -0.51 12.09 29.41 0.36 -0.15 16 16 O -0.17 -2.58 10.65 5.70 0.06 -2.52 16 17 C 0.70 14.60 8.02 -86.91 -0.70 13.90 16 18 O -0.56 -14.05 13.62 5.29 0.07 -13.98 16 19 N -0.69 -10.72 5.22 -14.25 -0.07 -10.80 16 20 C 0.17 2.50 6.28 -83.73 -0.53 1.97 16 21 C -0.12 -1.36 9.94 -39.34 -0.39 -1.75 16 22 C -0.11 -1.10 9.64 -39.58 -0.38 -1.48 16 23 C -0.06 -0.66 5.78 -104.18 -0.60 -1.26 16 24 C -0.15 -2.12 5.82 -105.01 -0.61 -2.73 16 25 C -0.06 -1.05 8.21 -38.92 -0.32 -1.37 16 26 C 0.40 5.62 6.89 -30.10 -0.21 5.42 16 27 O -0.45 -8.15 17.25 5.58 0.10 -8.05 16 28 C -0.16 -1.50 6.19 -27.28 -0.17 -1.67 16 29 C -0.11 -0.76 5.90 -26.70 -0.16 -0.92 16 30 C -0.08 -0.57 5.70 -28.20 -0.16 -0.74 16 31 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 32 H 0.04 1.20 6.48 -51.93 -0.34 0.86 16 33 H 0.03 0.71 7.50 -51.93 -0.39 0.33 16 34 H 0.10 1.11 6.29 -51.93 -0.33 0.79 16 35 H 0.11 1.73 8.07 -51.93 -0.42 1.31 16 36 H 0.14 1.58 7.55 -52.49 -0.40 1.18 16 37 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 38 H 0.20 1.66 8.06 -52.49 -0.42 1.23 16 39 H 0.40 4.76 5.87 -40.82 -0.24 4.52 16 40 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 42 H 0.15 3.07 6.08 -52.49 -0.32 2.75 16 43 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.08 0.41 8.11 -51.93 -0.42 -0.01 16 LS Contribution 400.93 15.07 6.04 6.04 Total: -1.00 -37.98 400.93 -9.85 -47.83 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -6.24 Total: 6.06 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -5.46 Total: -2.37 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: 0.25 Total: -50.23 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: 0.23 Total: -24.55 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -37.98 -9.85 -47.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089797688.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.742 kcal (2) G-P(sol) polarization free energy of solvation -37.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds