Wall clock time and date at job start Tue Mar 31 2020 07:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46895 * 2 1 4 4 N 1.46498 * 109.47146 * 119.99607 * 2 1 3 5 5 C 1.38859 * 120.00309 * 275.00423 * 4 2 1 6 6 C 1.39563 * 119.84198 * 179.97438 * 5 4 2 7 7 C 1.36337 * 120.15830 * 179.97438 * 6 5 4 8 8 C 1.40888 * 119.84068 * 359.97438 * 7 6 5 9 9 C 1.41135 * 120.15582 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99609 * 154.52295 * 9 8 7 11 11 C 1.39860 * 120.00168 * 334.52517 * 9 8 7 12 12 N 1.30910 * 119.99878 * 343.06203 * 11 9 8 13 13 Si 1.86800 * 120.00124 * 163.06525 * 11 9 8 14 14 H 1.48498 * 109.46840 * 359.97438 * 13 11 9 15 15 H 1.48505 * 109.47187 * 119.99989 * 13 11 9 16 16 H 1.48501 * 109.47088 * 239.99758 * 13 11 9 17 17 C 1.40885 * 119.68658 * 0.27871 * 8 7 6 18 18 C 1.36348 * 119.83268 * 359.44059 * 17 8 7 19 19 C 1.50696 * 109.47240 * 240.00204 * 2 1 3 20 20 N 1.30972 * 126.44193 * 105.00216 * 19 2 1 21 21 C 1.35217 * 105.58419 * 179.97438 * 20 19 2 22 22 C 1.48399 * 126.41901 * 179.97438 * 21 20 19 23 23 C 1.39345 * 120.10515 * 359.72236 * 22 21 20 24 24 C 1.37989 * 119.89013 * 179.76934 * 23 22 21 25 25 C 1.38448 * 120.10752 * 0.51181 * 24 23 22 26 26 Cl 1.73602 * 119.89386 * 179.76887 * 25 24 23 27 27 C 1.38446 * 120.21463 * 359.73638 * 25 24 23 28 28 C 1.37987 * 120.10559 * 0.02562 * 27 25 24 29 29 N 1.30778 * 107.16883 * 0.02562 * 21 20 19 30 30 O 1.21288 * 110.09107 * 359.74195 * 29 21 20 31 31 H 1.09009 * 109.47029 * 60.00386 * 1 2 3 32 32 H 1.09000 * 109.47191 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47141 * 300.00428 * 1 2 3 34 34 H 0.97001 * 119.99446 * 94.99724 * 4 2 1 35 35 H 1.07998 * 119.92001 * 0.02562 * 6 5 4 36 36 H 1.08008 * 120.08092 * 179.97438 * 7 6 5 37 37 H 0.97001 * 119.99895 * 180.02562 * 12 11 9 38 38 H 1.07997 * 120.08540 * 179.69564 * 17 8 7 39 39 H 1.08006 * 119.91643 * 180.27625 * 18 17 8 40 40 H 1.08001 * 120.05437 * 0.02562 * 23 22 21 41 41 H 1.07998 * 119.94634 * 180.23278 * 24 23 22 42 42 H 1.08002 * 119.94651 * 179.97438 * 27 25 24 43 43 H 1.08007 * 120.05063 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1509 0.0022 2.3923 6 6 2.6159 -0.6591 3.5300 7 6 2.7490 0.0149 4.7076 8 6 2.4164 1.3823 4.7742 9 6 2.5522 2.0866 5.9897 10 1 2.7043 3.1558 5.9801 11 6 2.4897 1.4000 7.2066 12 7 1.9852 0.1929 7.2518 13 14 3.1261 2.2055 8.7672 14 1 3.6429 3.5609 8.4494 15 1 2.0215 2.3150 9.7537 16 1 4.2205 1.3805 9.3392 17 6 1.9425 2.0420 3.6231 18 6 1.8198 1.3567 2.4507 19 6 2.0323 -0.7103 -1.2304 20 7 2.5488 -0.1502 -2.2958 21 6 2.8531 -1.1694 -3.1307 22 6 3.4648 -1.0522 -4.4777 23 6 3.7771 0.2027 -4.9967 24 6 4.3501 0.3063 -6.2477 25 6 4.6051 -0.8334 -6.9913 26 17 5.3207 -0.6962 -8.5670 27 6 4.2918 -2.0821 -6.4820 28 6 3.7231 -2.1962 -5.2300 29 7 2.5063 -2.2777 -2.5294 30 8 2.0389 -2.0308 -1.4377 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 2.2490 -1.6317 1.1526 35 1 2.8717 -1.7070 3.4771 36 1 3.1086 -0.4982 5.5874 37 1 1.9416 -0.2832 8.0958 38 1 1.6810 3.0889 3.6681 39 1 1.4609 1.8623 1.5663 40 1 3.5747 1.0926 -4.4191 41 1 4.5960 1.2782 -6.6493 42 1 4.4922 -2.9682 -7.0660 43 1 3.4794 -3.1709 -4.8335 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089913663.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:54 Heat of formation + Delta-G solvation = 112.847003 kcal Electronic energy + Delta-G solvation = -28244.015410 eV Core-core repulsion = 24089.964216 eV Total energy + Delta-G solvation = -4154.051194 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 369.098 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -45.76419 -39.79236 -38.39342 -37.06801 -36.36737 -35.79890 -33.68793 -32.58817 -31.66163 -30.98990 -30.33585 -29.32138 -28.24519 -25.28280 -25.06458 -24.21439 -23.17844 -22.72372 -21.56197 -20.75142 -20.05980 -18.30442 -18.17414 -17.40081 -17.21046 -16.62770 -16.24428 -15.77906 -15.45273 -14.94031 -14.56341 -14.41102 -14.13285 -14.06365 -13.86934 -13.70649 -12.92772 -12.91825 -12.64847 -12.60235 -12.44073 -12.24389 -12.10761 -11.97931 -11.84497 -11.65758 -11.62554 -11.43875 -11.29908 -11.15613 -11.09019 -10.88261 -10.59787 -10.39356 -9.73973 -9.61595 -9.40683 -9.38102 -8.99953 -8.72957 -7.58431 -6.73356 -6.53762 -4.13265 0.13193 0.75514 1.03322 1.59099 2.06503 2.55202 2.83944 3.01694 3.07102 3.12468 3.17525 3.20107 3.26647 3.55685 4.00664 4.08737 4.31627 4.34408 4.57008 4.68498 4.71811 4.91966 5.04260 5.09160 5.12341 5.25952 5.41997 5.52270 5.65186 5.66632 5.74126 5.74330 5.83827 5.90739 6.12382 6.15400 6.19809 6.22803 6.70937 6.94812 7.08854 7.21917 7.44093 7.56547 7.67354 7.87573 8.07357 8.22487 8.30085 8.47057 8.69319 8.98524 9.05189 10.30394 Molecular weight = 369.10amu Principal moments of inertia in cm(-1) A = 0.022978 B = 0.001452 C = 0.001422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.273345 B =19273.083104 C =19691.052502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.256 3.744 3 H 0.119 0.881 4 N -0.753 5.753 5 C 0.084 3.916 6 C -0.153 4.153 7 C -0.123 4.123 8 C 0.079 3.921 9 C -0.465 4.465 10 H 0.074 0.926 11 C 0.074 3.926 12 N -0.806 5.806 13 Si 0.903 3.097 14 H -0.262 1.262 15 H -0.277 1.277 16 H -0.274 1.274 17 C -0.189 4.189 18 C -0.156 4.156 19 C 0.200 3.800 20 N -0.471 5.471 21 C 0.205 3.795 22 C -0.012 4.012 23 C -0.062 4.062 24 C -0.112 4.112 25 C -0.020 4.020 26 Cl -0.065 7.065 27 C -0.112 4.112 28 C -0.072 4.072 29 N -0.375 5.375 30 O 0.087 5.913 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.391 0.609 35 H 0.089 0.911 36 H 0.120 0.880 37 H 0.277 0.723 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.148 0.852 41 H 0.143 0.857 42 H 0.141 0.859 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.764 -3.672 -24.258 24.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.146 3.854 3 H 0.136 0.864 4 N -0.391 5.391 5 C -0.012 4.012 6 C -0.175 4.175 7 C -0.143 4.143 8 C 0.076 3.924 9 C -0.496 4.496 10 H 0.092 0.908 11 C -0.141 4.141 12 N -0.433 5.433 13 Si 0.728 3.272 14 H -0.186 1.186 15 H -0.202 1.202 16 H -0.199 1.199 17 C -0.209 4.209 18 C -0.178 4.178 19 C -0.022 4.022 20 N -0.204 5.204 21 C -0.064 4.064 22 C -0.014 4.014 23 C -0.082 4.082 24 C -0.131 4.131 25 C -0.047 4.047 26 Cl -0.036 7.036 27 C -0.131 4.131 28 C -0.092 4.092 29 N -0.081 5.081 30 O 0.026 5.974 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.225 0.775 35 H 0.107 0.893 36 H 0.138 0.862 37 H 0.087 0.913 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.165 0.835 41 H 0.160 0.840 42 H 0.159 0.841 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.951 -4.142 -24.882 25.299 hybrid contribution 0.295 -0.111 0.765 0.827 sum 2.246 -4.253 -24.117 24.592 Atomic orbital electron populations 1.22390 0.93508 1.03392 1.03540 1.19194 0.94169 0.95346 0.76686 0.86380 1.43806 1.77719 1.11417 1.06117 1.17203 1.07467 0.91676 0.84825 1.20026 1.06745 0.97896 0.92835 1.20933 1.02046 0.95528 0.95793 1.17543 0.90369 0.92135 0.92348 1.19430 1.44582 0.95459 0.90113 0.90774 1.25813 0.92812 0.94685 1.00791 1.69849 1.33288 1.12159 1.27959 0.86349 0.79240 0.80453 0.81145 1.18584 1.20213 1.19935 1.20567 1.07706 0.98846 0.93766 1.19892 1.07814 0.92516 0.97532 1.29324 0.94225 0.80843 0.97794 1.71970 1.16714 1.29824 1.01880 1.23806 1.01075 0.84249 0.97313 1.17418 1.00871 0.94581 0.88534 1.21232 0.95245 0.97211 0.94517 1.21045 0.99781 0.98155 0.94089 1.21146 1.00252 0.95192 0.88153 1.98390 1.81915 1.98388 1.24894 1.20977 0.99780 0.96513 0.95821 1.21154 0.96473 0.98442 0.93141 1.74877 1.15564 1.23082 0.94528 1.85276 1.58194 1.27150 1.26752 0.91864 0.91722 0.89348 0.77507 0.89313 0.86233 0.91256 0.88897 0.89183 0.83463 0.83953 0.84078 0.84126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 9.39 37.16 0.35 -1.60 16 2 C 0.26 3.36 2.80 -69.09 -0.19 3.17 16 3 H 0.12 1.60 6.45 -51.92 -0.33 1.27 16 4 N -0.75 -11.75 5.21 -53.16 -0.28 -12.03 16 5 C 0.08 1.65 6.65 -83.69 -0.56 1.10 16 6 C -0.15 -3.35 9.82 -39.77 -0.39 -3.74 16 7 C -0.12 -3.06 8.63 -39.26 -0.34 -3.40 16 8 C 0.08 2.03 5.57 -106.79 -0.59 1.44 16 9 C -0.46 -12.15 9.03 -37.88 -0.34 -12.49 16 10 H 0.07 1.88 7.90 -52.49 -0.41 1.46 16 11 C 0.07 1.86 5.15 -17.34 -0.09 1.77 16 12 N -0.81 -20.66 10.96 55.54 0.61 -20.05 16 13 Si 0.90 18.67 29.59 -169.99 -5.03 13.64 16 14 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 15 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 16 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 17 C -0.19 -4.36 9.74 -39.26 -0.38 -4.75 16 18 C -0.16 -3.16 8.75 -39.77 -0.35 -3.51 16 19 C 0.20 2.63 7.24 -12.99 -0.09 2.53 16 20 N -0.47 -6.36 11.26 -9.88 -0.11 -6.47 16 21 C 0.21 2.66 7.80 -156.11 -1.22 1.45 16 22 C -0.01 -0.13 5.88 -104.89 -0.62 -0.75 16 23 C -0.06 -0.57 9.70 -39.26 -0.38 -0.95 16 24 C -0.11 -0.86 9.81 -39.60 -0.39 -1.25 16 25 C -0.02 -0.16 6.32 -39.43 -0.25 -0.41 16 26 Cl -0.06 -0.47 28.95 -51.86 -1.50 -1.97 16 27 C -0.11 -0.85 9.81 -39.60 -0.39 -1.24 16 28 C -0.07 -0.65 9.69 -39.26 -0.38 -1.03 16 29 N -0.37 -5.06 11.86 30.97 0.37 -4.69 16 30 O 0.09 1.16 11.10 18.04 0.20 1.36 16 31 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 1.12 7.67 -51.93 -0.40 0.73 16 34 H 0.39 5.69 8.44 -40.82 -0.34 5.35 16 35 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 36 H 0.12 3.11 6.19 -52.48 -0.32 2.79 16 37 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 38 H 0.09 2.04 8.06 -52.49 -0.42 1.61 16 39 H 0.09 1.56 6.05 -52.48 -0.32 1.25 16 40 H 0.15 1.28 7.88 -52.49 -0.41 0.87 16 41 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 43 H 0.14 1.18 7.87 -52.48 -0.41 0.76 16 LS Contribution 387.28 15.07 5.84 5.84 Total: -1.00 -27.48 387.28 -11.14 -38.63 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -4.63 Total: 9.40 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: -6.60 Total: -23.64 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 0.59 Total: -43.24 kcal Atomic # 8 Polarization: 1.16 SS G_CDS: 0.20 Total: 1.36 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.50 Total: -1.97 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -27.48 -11.14 -38.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089913663.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.473 kcal (2) G-P(sol) polarization free energy of solvation -27.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds