Wall clock time and date at job start Tue Mar 31 2020 06:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46905 * 109.46918 * 2 1 4 4 C 1.46903 * 110.99910 * 293.95773 * 3 2 1 5 5 C 1.39921 * 111.00000 * 170.00294 * 3 2 1 6 6 C 1.38712 * 120.10040 * 60.27648 * 5 3 2 7 7 C 1.38229 * 119.99381 * 180.31543 * 6 5 3 8 8 C 1.38271 * 120.18840 * 359.68418 * 7 6 5 9 9 C 1.38243 * 120.20032 * 0.02562 * 8 7 6 10 10 C 1.38652 * 120.00246 * 0.02562 * 9 8 7 11 11 N 1.40205 * 120.09284 * 180.02562 * 10 9 8 12 12 C 1.34769 * 120.00440 * 34.65064 * 11 10 9 13 13 O 1.21593 * 119.99762 * 355.56462 * 12 11 10 14 14 N 1.34780 * 120.00342 * 175.56224 * 12 11 10 15 15 C 1.46494 * 119.99644 * 359.97438 * 14 12 11 16 16 C 1.50700 * 109.47341 * 270.00110 * 15 14 12 17 17 H 1.07995 * 120.00023 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99791 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99820 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00213 * 359.97438 * 18 16 15 21 21 H 1.48507 * 109.47227 * 90.00099 * 20 18 16 22 22 H 1.48500 * 109.47190 * 209.99974 * 20 18 16 23 23 H 1.48499 * 109.47206 * 330.00369 * 20 18 16 24 24 C 1.46495 * 119.99754 * 180.02562 * 14 12 11 25 25 C 1.50694 * 109.47349 * 269.99926 * 24 14 12 26 26 C 1.38228 * 119.61864 * 95.02378 * 25 24 14 27 27 C 1.38632 * 119.16022 * 179.74959 * 26 25 24 28 28 C 1.38682 * 118.41886 * 0.47307 * 27 26 25 29 29 C 1.38177 * 119.16218 * 359.50598 * 28 27 26 30 30 N 1.31867 * 119.61915 * 275.00273 * 25 24 14 31 31 H 1.09002 * 109.47395 * 60.00315 * 1 2 3 32 32 H 1.09000 * 109.47032 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47556 * 299.99667 * 1 2 3 34 34 H 1.09006 * 109.47256 * 240.00683 * 2 1 3 35 35 H 1.08993 * 109.47372 * 119.99842 * 2 1 3 36 36 H 1.09001 * 109.47105 * 296.04230 * 4 3 2 37 37 H 1.08998 * 109.47053 * 56.04620 * 4 3 2 38 38 H 1.08995 * 109.46696 * 176.04652 * 4 3 2 39 39 H 1.08001 * 120.00138 * 0.02562 * 6 5 3 40 40 H 1.08000 * 119.90498 * 179.70345 * 7 6 5 41 41 H 1.08006 * 119.90058 * 180.02562 * 8 7 6 42 42 H 1.08004 * 119.99891 * 180.02562 * 9 8 7 43 43 H 0.97005 * 119.99674 * 214.64683 * 11 10 9 44 44 H 1.08996 * 109.47449 * 30.00345 * 15 14 12 45 45 H 1.09004 * 109.47176 * 149.99971 * 15 14 12 46 46 H 0.97003 * 120.00204 * 179.97438 * 19 18 16 47 47 H 1.09005 * 109.46860 * 150.00166 * 24 14 12 48 48 H 1.08993 * 109.47726 * 30.00266 * 24 14 12 49 49 H 1.07995 * 120.42275 * 359.96060 * 26 25 24 50 50 H 1.07998 * 120.79137 * 180.23484 * 27 26 25 51 51 H 1.08003 * 120.41477 * 179.78586 * 28 27 26 52 52 H 1.08006 * 119.61433 * 180.25463 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.6700 2.0670 -1.2533 5 6 3.3996 1.4290 0.2268 6 6 4.2691 0.7969 -0.6498 7 6 5.6316 0.8362 -0.4201 8 6 6.1323 1.5101 0.6786 9 6 5.2733 2.1479 1.5540 10 6 3.9052 2.1127 1.3320 11 7 3.0323 2.7594 2.2183 12 6 3.4056 3.9099 2.8126 13 8 4.5284 4.3450 2.6436 14 7 2.5345 4.5783 3.5943 15 6 1.1816 4.0544 3.7974 16 6 0.2646 4.6064 2.7365 17 1 0.6509 5.2804 1.9862 18 6 -1.0677 4.2517 2.7243 19 7 -1.8681 4.7338 1.7988 20 14 -1.7360 3.0865 4.0224 21 1 -2.2110 3.8684 5.1922 22 1 -2.8666 2.3089 3.4547 23 1 -0.6616 2.1559 4.4524 24 6 2.9403 5.8292 4.2398 25 6 3.5333 5.5275 5.5919 26 6 4.9032 5.3980 5.7235 27 6 5.4390 5.1255 6.9728 28 6 4.5722 4.9830 8.0459 29 6 3.2137 5.1265 7.8378 30 7 2.7395 5.3903 6.6358 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5138 0.8899 36 1 2.1768 1.5792 -2.0860 37 1 0.5918 2.0179 -1.4051 38 1 1.9822 3.1099 -1.1987 39 1 3.8813 0.2701 -1.5092 40 1 6.3070 0.3395 -1.1009 41 1 7.1978 1.5382 0.8534 42 1 5.6680 2.6736 2.4110 43 1 2.1595 2.3787 2.4038 44 1 1.1996 2.9666 3.7320 45 1 0.8202 4.3533 4.7814 46 1 -2.8054 4.4840 1.7899 47 1 2.0702 6.4746 4.3605 48 1 3.6832 6.3329 3.6215 49 1 5.5483 5.5111 4.8648 50 1 6.5058 5.0229 7.1064 51 1 4.9545 4.7670 9.0326 52 1 2.5323 5.0210 8.6691 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089960894.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:47 Heat of formation + Delta-G solvation = 62.818626 kcal Electronic energy + Delta-G solvation = -34513.055913 eV Core-core repulsion = 30285.511013 eV Total energy + Delta-G solvation = -4227.544900 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 368.195 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.50132 -39.93946 -38.89563 -36.63286 -35.28340 -34.26599 -32.66919 -32.24067 -31.50965 -31.11826 -29.45900 -28.60487 -28.13827 -26.13132 -25.58410 -23.36111 -23.08059 -22.54269 -22.25020 -21.39701 -20.43727 -19.19212 -17.86588 -17.07947 -16.87588 -16.61758 -16.38749 -15.92112 -15.39563 -15.27796 -15.14976 -15.03647 -14.46920 -14.36362 -14.13171 -13.79192 -13.65657 -13.53216 -13.13267 -13.12603 -12.91653 -12.70695 -12.46442 -12.33889 -12.05591 -11.85337 -11.74052 -11.64020 -11.60911 -11.48465 -11.38743 -11.13564 -10.94539 -10.66131 -10.61332 -10.26642 -9.90052 -9.73695 -9.59131 -9.42992 -9.23629 -8.85449 -8.64258 -8.51486 -8.24214 -7.96167 -7.48587 -6.13873 -4.14219 1.22947 1.44825 1.51942 1.64678 3.21513 3.25531 3.31342 3.33514 3.65713 3.99555 4.02386 4.16856 4.33461 4.51395 4.66543 4.92309 4.98360 5.08672 5.17410 5.17840 5.20076 5.24139 5.30916 5.33036 5.45954 5.59333 5.64847 5.67486 5.72851 5.74263 5.81755 5.88559 5.95962 5.96344 6.06291 6.19797 6.21844 6.27480 6.29732 6.33698 6.42811 6.47502 6.50357 6.60350 6.71179 6.75826 6.86756 6.93579 7.16487 7.18865 7.24278 7.49456 7.64756 7.73164 8.22704 8.33397 8.58650 8.92476 9.16145 9.46033 10.98720 Molecular weight = 368.20amu Principal moments of inertia in cm(-1) A = 0.007170 B = 0.004477 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3904.484612 B = 6252.671709 C = 9201.177577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 N -0.497 5.497 4 C 0.036 3.964 5 C 0.055 3.945 6 C -0.132 4.132 7 C -0.141 4.141 8 C -0.107 4.107 9 C -0.123 4.123 10 C 0.204 3.796 11 N -0.667 5.667 12 C 0.712 3.288 13 O -0.603 6.603 14 N -0.595 5.595 15 C 0.212 3.788 16 C -0.533 4.533 17 H 0.079 0.921 18 C 0.082 3.918 19 N -0.889 5.889 20 Si 0.868 3.132 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.267 1.267 24 C 0.185 3.815 25 C 0.118 3.882 26 C -0.148 4.148 27 C -0.083 4.083 28 C -0.181 4.181 29 C 0.093 3.907 30 N -0.468 5.468 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.032 0.968 35 H 0.071 0.929 36 H 0.023 0.977 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.120 0.880 42 H 0.143 0.857 43 H 0.421 0.579 44 H 0.021 0.979 45 H 0.042 0.958 46 H 0.264 0.736 47 H 0.100 0.900 48 H 0.094 0.906 49 H 0.140 0.860 50 H 0.129 0.871 51 H 0.129 0.871 52 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.305 -7.165 2.463 14.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.069 4.069 3 N -0.218 5.218 4 C -0.111 4.111 5 C -0.042 4.042 6 C -0.152 4.152 7 C -0.161 4.161 8 C -0.126 4.126 9 C -0.144 4.144 10 C 0.106 3.894 11 N -0.314 5.314 12 C 0.415 3.585 13 O -0.484 6.484 14 N -0.327 5.327 15 C 0.091 3.909 16 C -0.571 4.571 17 H 0.097 0.903 18 C -0.122 4.122 19 N -0.527 5.527 20 Si 0.695 3.305 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.192 1.192 24 C 0.061 3.939 25 C -0.021 4.021 26 C -0.169 4.169 27 C -0.110 4.110 28 C -0.201 4.201 29 C -0.065 4.065 30 N -0.177 5.177 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.050 0.950 35 H 0.089 0.911 36 H 0.041 0.959 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.138 0.862 42 H 0.161 0.839 43 H 0.261 0.739 44 H 0.039 0.961 45 H 0.060 0.940 46 H 0.074 0.926 47 H 0.118 0.882 48 H 0.112 0.888 49 H 0.158 0.842 50 H 0.147 0.853 51 H 0.147 0.853 52 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 11.614 -6.443 2.596 13.533 hybrid contribution 0.213 -1.352 0.216 1.386 sum 11.827 -7.795 2.812 14.441 Atomic orbital electron populations 1.21829 0.94412 1.01175 1.03497 1.22129 0.96258 0.88016 1.00463 1.59469 1.09931 1.16000 1.36428 1.22392 1.01637 0.99251 0.87776 1.18585 0.88897 1.02397 0.94272 1.21332 0.93895 1.00788 0.99206 1.20860 0.94743 1.01778 0.98717 1.20996 0.99328 0.97442 0.94803 1.21320 0.91511 1.00109 1.01434 1.17494 0.89477 0.93573 0.88841 1.42678 1.20448 1.23468 1.44783 1.15758 0.84076 0.79994 0.78685 1.90783 1.19811 1.69868 1.67934 1.46979 1.13726 1.23896 1.48126 1.19788 0.78781 0.93781 0.98569 1.21303 0.93008 1.29871 1.12934 0.90317 1.24782 0.96623 0.95505 0.95243 1.69889 1.05267 1.43964 1.33540 0.86989 0.79283 0.81805 0.82454 1.19936 1.21042 1.19150 1.20057 1.00923 0.86282 0.86686 1.21964 0.90290 0.94548 0.95321 1.22152 0.96480 0.99930 0.98305 1.21564 1.00126 0.96531 0.92732 1.22088 0.95142 1.02984 0.99865 1.22744 0.93512 0.95528 0.94699 1.67584 1.40223 1.10807 0.99118 0.92364 0.92588 0.91157 0.94969 0.91072 0.95891 0.90510 0.91052 0.86552 0.86651 0.86232 0.83906 0.73934 0.96116 0.94029 0.92571 0.88182 0.88824 0.84209 0.85258 0.85322 0.83122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.84 37.16 0.37 -1.68 16 2 C 0.06 0.79 5.27 -3.82 -0.02 0.77 16 3 N -0.50 -8.02 4.21 -178.76 -0.75 -8.77 16 4 C 0.04 0.55 9.19 60.07 0.55 1.11 16 5 C 0.06 0.89 4.70 -83.54 -0.39 0.50 16 6 C -0.13 -1.81 8.66 -39.41 -0.34 -2.15 16 7 C -0.14 -1.79 10.04 -39.57 -0.40 -2.19 16 8 C -0.11 -1.45 10.04 -39.57 -0.40 -1.85 16 9 C -0.12 -2.02 8.70 -39.43 -0.34 -2.36 16 10 C 0.20 3.65 6.33 -83.42 -0.53 3.12 16 11 N -0.67 -13.11 5.06 -14.07 -0.07 -13.18 16 12 C 0.71 14.78 8.12 -86.92 -0.71 14.08 16 13 O -0.60 -12.71 13.29 5.28 0.07 -12.64 16 14 N -0.59 -12.33 2.44 -182.20 -0.44 -12.78 16 15 C 0.21 4.81 4.03 -5.20 -0.02 4.79 16 16 C -0.53 -14.02 9.94 -34.44 -0.34 -14.37 16 17 H 0.08 2.34 8.06 -52.49 -0.42 1.91 16 18 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 19 N -0.89 -25.63 13.96 55.43 0.77 -24.86 16 20 Si 0.87 20.23 27.47 -169.99 -4.67 15.56 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.27 -5.94 6.54 56.52 0.37 -5.57 16 24 C 0.19 3.42 5.71 -5.20 -0.03 3.39 16 25 C 0.12 2.00 6.36 -82.58 -0.53 1.48 16 26 C -0.15 -2.20 9.72 -39.44 -0.38 -2.58 16 27 C -0.08 -1.02 10.18 -39.27 -0.40 -1.42 16 28 C -0.18 -2.11 10.11 -39.44 -0.40 -2.51 16 29 C 0.09 1.27 11.18 -17.55 -0.20 1.07 16 30 N -0.47 -8.03 10.27 -9.47 -0.10 -8.13 16 31 H 0.06 0.78 6.47 -51.93 -0.34 0.44 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.03 0.39 7.49 -51.93 -0.39 0.00 16 35 H 0.07 0.96 8.06 -51.93 -0.42 0.55 16 36 H 0.02 0.30 7.33 -51.93 -0.38 -0.08 16 37 H 0.08 1.16 6.30 -51.93 -0.33 0.84 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.12 1.40 7.14 -52.49 -0.37 1.03 16 40 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 41 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 42 H 0.14 2.50 6.20 -52.48 -0.33 2.18 16 43 H 0.42 8.58 6.20 -40.82 -0.25 8.32 16 44 H 0.02 0.48 5.36 -51.93 -0.28 0.20 16 45 H 0.04 0.97 7.50 -51.93 -0.39 0.58 16 46 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 47 H 0.10 1.89 8.07 -51.93 -0.42 1.47 16 48 H 0.09 1.65 7.32 -51.93 -0.38 1.27 16 49 H 0.14 2.04 8.01 -52.49 -0.42 1.62 16 50 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 51 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 52 H 0.15 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 423.58 15.07 6.38 6.38 Total: -1.00 -30.61 423.58 -11.07 -41.68 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: -7.66 Total: 15.42 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -4.60 Total: 1.31 kcal Atomic # 7 Polarization: -67.12 SS G_CDS: -0.59 Total: -67.71 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.07 Total: -12.64 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.67 Total: 15.56 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -30.61 -11.07 -41.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089960894.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.499 kcal (2) G-P(sol) polarization free energy of solvation -30.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds