Wall clock time and date at job start Tue Mar 31 2020 07:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 N 1.46495 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.34965 * 125.97869 * 124.71943 * 10 9 7 12 12 C 1.35241 * 107.86302 * 179.87777 * 11 10 9 13 13 C 1.40411 * 107.86611 * 0.38043 * 12 11 10 14 14 N 1.40156 * 125.97049 * 179.75956 * 13 12 11 15 15 C 1.34768 * 120.00143 * 0.03124 * 14 13 12 16 16 O 1.21284 * 120.00281 * 359.97438 * 15 14 13 17 17 C 1.50707 * 119.99811 * 179.97438 * 15 14 13 18 18 H 1.08996 * 109.47262 * 304.99887 * 17 15 14 19 19 O 1.42899 * 109.46859 * 184.99759 * 17 15 14 20 20 C 1.50699 * 109.46943 * 65.00220 * 17 15 14 21 21 C 1.38220 * 119.98844 * 84.72516 * 20 17 15 22 22 C 1.38362 * 120.01259 * 179.72671 * 21 20 17 23 23 Cl 1.73606 * 120.00598 * 180.27180 * 22 21 20 24 24 C 1.38321 * 119.98652 * 0.52484 * 22 21 20 25 25 C 1.38329 * 119.97554 * 359.74749 * 24 22 21 26 26 Cl 1.73604 * 120.00900 * 180.02562 * 25 24 22 27 27 C 1.38221 * 119.98651 * 264.99506 * 20 17 15 28 28 N 1.31221 * 108.05164 * 359.76641 * 13 12 11 29 29 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 31 31 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 32 32 H 1.08000 * 126.06750 * 0.02562 * 11 10 9 33 33 H 1.07998 * 126.06422 * 180.12700 * 12 11 10 34 34 H 0.97004 * 119.99831 * 180.02562 * 14 13 12 35 35 H 0.96698 * 114.00304 * 300.00394 * 19 17 15 36 36 H 1.07999 * 119.99313 * 0.02562 * 21 20 17 37 37 H 1.08002 * 120.01403 * 179.77607 * 24 22 21 38 38 H 1.07998 * 119.98929 * 0.02562 * 27 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 7 3.9999 -2.5752 -0.0181 11 6 4.8469 -3.1128 -0.9209 12 6 5.0532 -4.4047 -0.5782 13 6 4.2965 -4.6708 0.5743 14 7 4.2280 -5.8973 1.2491 15 6 4.9313 -6.9547 0.7982 16 8 5.6232 -6.8453 -0.1919 17 6 4.8580 -8.2733 1.5242 18 1 5.1207 -8.1264 2.5718 19 8 5.7722 -9.1963 0.9288 20 6 3.4576 -8.8217 1.4296 21 6 3.0762 -9.5551 0.3218 22 6 1.7922 -10.0636 0.2369 23 17 1.3156 -10.9907 -1.1513 24 6 0.8869 -9.8288 1.2560 25 6 1.2674 -9.0900 2.3618 26 17 0.1320 -8.7953 3.6417 27 6 2.5532 -8.5864 2.4480 28 7 3.6647 -3.5705 0.9089 29 1 -0.4850 0.8400 0.0004 30 1 3.8711 -0.6780 -0.9023 31 1 3.8785 -0.6824 0.8776 32 1 5.2843 -2.6013 -1.7656 33 1 5.6844 -5.1081 -1.1009 34 1 3.6744 -5.9849 2.0409 35 1 5.5983 -9.3749 -0.0055 36 1 3.7821 -9.7353 -0.4755 37 1 -0.1165 -10.2225 1.1885 38 1 2.8504 -8.0093 3.3111 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095450472.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:00 Heat of formation + Delta-G solvation = 18.410596 kcal Electronic energy + Delta-G solvation = -27339.692163 eV Core-core repulsion = 23043.279956 eV Total energy + Delta-G solvation = -4296.412208 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 369.043 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.17971 -40.40095 -39.27019 -37.18983 -37.15310 -36.40683 -34.97222 -33.41242 -32.28631 -31.26442 -31.14649 -29.51377 -28.11131 -26.84661 -23.38077 -23.36460 -22.49592 -21.66873 -20.40379 -19.82100 -18.57076 -17.83768 -17.19260 -16.87368 -16.55340 -16.50806 -15.90272 -15.47507 -15.30918 -14.89256 -14.68709 -14.49098 -14.20975 -14.06899 -13.66154 -13.20865 -12.85135 -12.74272 -12.62272 -12.54446 -12.44854 -12.29232 -12.10335 -11.76747 -11.57318 -11.36078 -11.26961 -11.12272 -10.92230 -10.59938 -10.21461 -10.05184 -9.87266 -9.58866 -9.27278 -9.23237 -8.80284 -8.30118 -7.64813 -6.26914 -4.29755 0.42199 0.45937 1.36746 1.81478 2.01587 2.46752 2.73362 2.85412 3.13393 3.18216 3.21473 3.50747 3.60310 3.82677 3.89944 4.19475 4.35346 4.38703 4.40462 4.49009 4.60107 4.86452 4.98012 5.00618 5.34575 5.45444 5.52945 5.59316 5.61418 5.90690 6.04209 6.28869 6.35013 6.42229 6.57726 6.95995 7.17709 7.21068 7.41499 7.73052 7.95311 8.28485 8.45819 8.82155 9.27650 10.85659 Molecular weight = 369.04amu Principal moments of inertia in cm(-1) A = 0.009418 B = 0.002524 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2972.258045 B =11092.267894 C =12361.200438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.077 3.923 3 Si 0.874 3.126 4 H -0.271 1.271 5 H -0.265 1.265 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.085 0.915 9 C 0.232 3.768 10 N -0.317 5.317 11 C 0.053 3.947 12 C -0.283 4.283 13 C 0.256 3.744 14 N -0.622 5.622 15 C 0.495 3.505 16 O -0.503 6.503 17 C 0.146 3.854 18 H 0.144 0.856 19 O -0.522 6.522 20 C -0.098 4.098 21 C -0.090 4.090 22 C -0.017 4.017 23 Cl -0.051 7.051 24 C -0.096 4.096 25 C -0.017 4.017 26 Cl -0.047 7.047 27 C -0.094 4.094 28 N -0.293 5.293 29 H 0.268 0.732 30 H 0.054 0.946 31 H 0.038 0.962 32 H 0.170 0.830 33 H 0.161 0.839 34 H 0.411 0.589 35 H 0.386 0.614 36 H 0.142 0.858 37 H 0.148 0.852 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.278 -21.952 3.657 23.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.127 4.127 3 Si 0.700 3.300 4 H -0.197 1.197 5 H -0.190 1.190 6 H -0.206 1.206 7 C -0.574 4.574 8 H 0.104 0.896 9 C 0.113 3.887 10 N -0.098 5.098 11 C -0.096 4.096 12 C -0.314 4.314 13 C 0.003 3.997 14 N -0.270 5.270 15 C 0.279 3.721 16 O -0.376 6.376 17 C 0.082 3.918 18 H 0.161 0.839 19 O -0.328 6.328 20 C -0.099 4.099 21 C -0.109 4.109 22 C -0.044 4.044 23 Cl -0.022 7.022 24 C -0.115 4.115 25 C -0.044 4.044 26 Cl -0.018 7.018 27 C -0.113 4.113 28 N -0.123 5.123 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.187 0.813 33 H 0.179 0.821 34 H 0.247 0.753 35 H 0.236 0.764 36 H 0.160 0.840 37 H 0.166 0.834 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.891 -21.167 4.338 22.395 hybrid contribution -0.047 0.609 -0.741 0.961 sum 5.844 -20.557 3.597 21.672 Atomic orbital electron populations 1.69871 1.06152 1.27339 1.48981 1.24829 0.94872 0.98794 0.94212 0.86895 0.80233 0.83823 0.79024 1.19679 1.18959 1.20560 1.21092 0.87715 0.95726 1.52876 0.89650 1.20080 0.97522 0.72853 0.98280 1.48649 1.32631 1.10197 1.18347 1.22569 0.95912 0.94654 0.96515 1.21515 1.11540 0.96863 1.01478 1.19089 0.99260 0.86541 0.94815 1.42408 1.46877 1.07507 1.30242 1.21237 0.79765 0.85481 0.85642 1.90684 1.38831 1.83172 1.24898 1.20594 0.85836 0.85858 0.99485 0.83888 1.86669 1.53951 1.61770 1.30378 1.20094 0.95888 0.99326 0.94624 1.20858 0.94999 0.96955 0.98085 1.20645 0.94425 0.98773 0.90599 1.98409 1.91925 1.71432 1.40393 1.21000 1.00531 0.98474 0.91532 1.20684 0.91587 1.00498 0.91634 1.98421 1.59909 1.94689 1.48764 1.20990 0.91362 0.99513 0.99413 1.77405 1.23385 0.95477 1.16062 0.92138 0.92841 0.94388 0.81290 0.82148 0.75328 0.76404 0.84025 0.83428 0.83495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 13.96 55.43 0.77 -25.48 16 2 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.87 19.85 27.47 -169.99 -4.67 15.18 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.26 -5.57 6.54 56.52 0.37 -5.21 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.54 -14.87 9.79 -34.44 -0.34 -15.21 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 9 C 0.23 5.36 5.33 -5.20 -0.03 5.33 16 10 N -0.32 -6.95 3.67 -62.56 -0.23 -7.18 16 11 C 0.05 0.98 11.43 -17.24 -0.20 0.79 16 12 C -0.28 -5.23 9.61 -39.83 -0.38 -5.61 16 13 C 0.26 4.82 8.11 -154.39 -1.25 3.57 16 14 N -0.62 -8.68 5.40 -11.13 -0.06 -8.74 16 15 C 0.49 6.17 7.12 -10.99 -0.08 6.09 16 16 O -0.50 -7.74 13.45 -14.31 -0.19 -7.94 16 17 C 0.15 1.23 3.62 -29.03 -0.11 1.13 16 18 H 0.14 0.86 8.05 -51.93 -0.42 0.44 16 19 O -0.52 -4.65 12.79 -55.09 -0.70 -5.36 16 20 C -0.10 -0.80 4.95 -104.64 -0.52 -1.32 16 21 C -0.09 -0.76 9.11 -39.54 -0.36 -1.12 16 22 C -0.02 -0.15 6.32 -39.51 -0.25 -0.40 16 23 Cl -0.05 -0.43 28.96 -51.86 -1.50 -1.94 16 24 C -0.10 -0.82 9.61 -39.52 -0.38 -1.20 16 25 C -0.02 -0.15 6.32 -39.50 -0.25 -0.40 16 26 Cl -0.05 -0.42 28.96 -51.86 -1.50 -1.92 16 27 C -0.09 -0.74 9.30 -39.54 -0.37 -1.10 16 28 N -0.29 -6.44 12.42 31.44 0.39 -6.05 16 29 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.05 1.14 7.12 -51.93 -0.37 0.77 16 31 H 0.04 0.86 7.57 -51.93 -0.39 0.47 16 32 H 0.17 2.47 8.06 -52.49 -0.42 2.05 16 33 H 0.16 2.85 5.92 -52.49 -0.31 2.54 16 34 H 0.41 4.67 8.66 -40.82 -0.35 4.32 16 35 H 0.39 2.65 7.14 45.56 0.33 2.98 16 36 H 0.14 0.98 6.62 -52.49 -0.35 0.63 16 37 H 0.15 1.08 8.06 -52.49 -0.42 0.65 16 38 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 365.53 15.07 5.51 5.51 Total: -1.00 -34.11 365.53 -9.51 -43.63 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -2.73 Total: 7.71 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -4.60 Total: -7.43 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: 0.87 Total: -47.45 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -0.90 Total: -13.29 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.67 Total: 15.18 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -3.00 Total: -3.85 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.11 -9.51 -43.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095450472.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.036 kcal (2) G-P(sol) polarization free energy of solvation -34.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds