Wall clock time and date at job start Tue Mar 31 2020 07:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34226 * 116.99810 * 2 1 4 4 O 1.20829 * 120.00440 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99791 * 179.97438 * 3 2 1 6 6 N 1.46499 * 109.46915 * 179.97438 * 5 3 2 7 7 C 1.37096 * 119.99950 * 264.08643 * 6 5 3 8 8 H 1.08003 * 119.99566 * 196.60820 * 7 6 5 9 9 C 1.38951 * 120.00125 * 16.60739 * 7 6 5 10 10 N 1.31407 * 120.00061 * 20.78892 * 9 7 6 11 11 Si 1.86805 * 119.99917 * 200.78754 * 9 7 6 12 12 H 1.48501 * 109.46849 * 60.00292 * 11 9 7 13 13 H 1.48499 * 109.46834 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47054 * 300.00213 * 11 9 7 15 15 C 1.34775 * 119.99727 * 84.09116 * 6 5 3 16 16 O 1.21294 * 120.00477 * 359.97438 * 15 6 5 17 17 C 1.50705 * 119.99871 * 180.02562 * 15 6 5 18 18 C 1.50698 * 109.47229 * 180.02562 * 17 15 6 19 19 C 1.38266 * 119.98624 * 264.99516 * 18 17 15 20 20 C 1.38193 * 120.01122 * 179.69848 * 19 18 17 21 21 C 1.38353 * 119.98686 * 0.28337 * 20 19 18 22 22 Br 1.89098 * 120.00928 * 180.02562 * 21 20 19 23 23 C 1.38298 * 119.98156 * 359.97438 * 21 20 19 24 24 C 1.38218 * 119.99600 * 85.24880 * 18 17 15 25 25 C 1.50703 * 119.99075 * 0.02562 * 24 18 17 26 26 H 1.09004 * 109.46921 * 60.00672 * 1 2 3 27 27 H 1.09007 * 109.47125 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47661 * 300.00164 * 1 2 3 29 29 H 1.09006 * 109.46851 * 60.00324 * 5 3 2 30 30 H 1.09000 * 109.47350 * 300.00021 * 5 3 2 31 31 H 0.96996 * 120.00185 * 179.97438 * 10 9 7 32 32 H 1.09001 * 109.47472 * 59.99375 * 17 15 6 33 33 H 1.09004 * 109.46645 * 299.99377 * 17 15 6 34 34 H 1.07998 * 119.99558 * 359.97438 * 19 18 17 35 35 H 1.08002 * 120.00965 * 180.29857 * 20 19 18 36 36 H 1.08003 * 120.00596 * 180.02562 * 23 21 20 37 37 H 1.08997 * 109.47471 * 270.27412 * 25 24 18 38 38 H 1.08999 * 109.47088 * 30.27856 * 25 24 18 39 39 H 1.09008 * 109.46673 * 150.27345 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6797 -0.0002 7 6 4.2938 3.3016 -1.1814 8 1 4.8473 4.2290 -1.1736 9 6 3.8980 2.7389 -2.3886 10 7 2.9096 1.8734 -2.4174 11 14 4.7710 3.2127 -3.9707 12 1 6.2102 2.8618 -3.8661 13 1 4.1637 2.4789 -5.1100 14 1 4.6327 4.6743 -4.1938 15 6 4.0570 3.3607 1.1604 16 8 3.7805 2.8106 2.2055 17 6 4.4837 4.8061 1.1597 18 6 4.4859 5.3300 2.5727 19 6 3.3801 5.9996 3.0632 20 6 3.3793 6.4748 4.3609 21 6 4.4874 6.2855 5.1673 22 35 4.4866 6.9348 6.9433 23 6 5.5953 5.6203 4.6745 24 6 5.5953 5.1456 3.3762 25 6 6.8027 4.4212 2.8389 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 3.9564 0.7806 -0.8892 30 1 3.9557 0.7809 0.8908 31 1 2.6331 1.4808 -3.2602 32 1 3.7884 5.3899 0.5564 33 1 5.4865 4.8886 0.7404 34 1 2.5152 6.1474 2.4335 35 1 2.5136 6.9936 4.7455 36 1 6.4604 5.4720 5.3039 37 1 6.7035 3.3538 3.0360 38 1 6.8773 4.5869 1.7641 39 1 7.7006 4.7992 3.3280 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095995221.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:12 Heat of formation + Delta-G solvation = -85.384971 kcal Electronic energy + Delta-G solvation = -25567.110484 eV Core-core repulsion = 21714.600856 eV Total energy + Delta-G solvation = -3852.509628 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 369.041 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -39.81516 -39.24988 -38.05327 -35.47182 -34.64381 -33.44479 -32.07957 -31.64714 -30.46630 -28.72992 -27.35695 -26.53745 -25.76936 -24.50331 -22.04039 -20.91073 -20.06299 -19.20052 -17.20017 -16.62023 -16.37984 -15.93662 -15.75538 -15.42933 -15.22258 -14.70000 -14.47222 -14.16927 -13.68646 -13.59237 -13.05005 -12.73918 -12.71139 -12.56645 -12.39504 -12.32198 -12.12828 -11.65976 -11.40249 -11.35354 -11.21993 -10.86645 -10.83712 -10.72831 -10.56868 -10.53724 -10.39149 -10.21414 -9.84102 -9.62209 -9.06076 -8.76099 -8.57740 -8.18550 -8.02722 -6.57344 -4.06826 1.33918 1.54357 1.73415 3.03779 3.13935 3.15049 3.44014 3.66301 3.79600 3.97223 4.03398 4.65794 4.90671 4.94546 5.04384 5.16208 5.39678 5.45215 5.66899 5.68305 5.76269 5.82292 5.91127 5.92403 5.95606 6.06843 6.13009 6.20467 6.26146 6.37385 6.38389 6.41702 6.54223 6.62182 6.91283 7.08136 7.26521 7.42392 7.53965 8.15432 8.90752 9.07599 9.29521 9.70539 10.49926 Molecular weight = 369.04amu Principal moments of inertia in cm(-1) A = 0.014390 B = 0.002747 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.291653 B =10191.580304 C =11416.352700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.376 6.376 3 C 0.485 3.515 4 O -0.500 6.500 5 C 0.157 3.843 6 N -0.429 5.429 7 C -0.340 4.340 8 H 0.104 0.896 9 C 0.039 3.961 10 N -0.868 5.868 11 Si 0.925 3.075 12 H -0.271 1.271 13 H -0.284 1.284 14 H -0.272 1.272 15 C 0.476 3.524 16 O -0.593 6.593 17 C -0.091 4.091 18 C -0.029 4.029 19 C -0.099 4.099 20 C -0.098 4.098 21 C -0.094 4.094 22 Br -0.069 7.069 23 C -0.094 4.094 24 C -0.065 4.065 25 C -0.116 4.116 26 H 0.055 0.945 27 H 0.085 0.915 28 H 0.050 0.950 29 H 0.123 0.877 30 H 0.081 0.919 31 H 0.274 0.726 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.076 5.315 9.550 11.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.293 6.293 3 C 0.326 3.674 4 O -0.385 6.385 5 C 0.032 3.968 6 N -0.148 5.148 7 C -0.467 4.467 8 H 0.122 0.878 9 C -0.166 4.166 10 N -0.505 5.505 11 Si 0.751 3.249 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.198 1.198 15 C 0.265 3.735 16 O -0.478 6.478 17 C -0.130 4.130 18 C -0.029 4.029 19 C -0.118 4.118 20 C -0.118 4.118 21 C -0.173 4.173 22 Br 0.016 6.984 23 C -0.113 4.113 24 C -0.066 4.066 25 C -0.172 4.172 26 H 0.074 0.926 27 H 0.104 0.896 28 H 0.068 0.932 29 H 0.141 0.859 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.598 5.473 10.560 12.426 hybrid contribution -0.211 0.119 -1.491 1.511 sum 3.387 5.593 9.069 11.180 Atomic orbital electron populations 1.22932 0.78709 1.01817 1.01625 1.86455 1.21686 1.35512 1.85687 1.23966 0.92302 0.80558 0.70559 1.90508 1.66517 1.36383 1.45081 1.20471 0.87214 0.85622 1.03526 1.43388 1.57304 1.08044 1.06101 1.19590 1.35044 1.09751 0.82270 0.87805 1.25217 0.94767 0.96984 0.99649 1.69829 1.22709 1.29871 1.28123 0.86026 0.79562 0.78863 0.80446 1.19672 1.20899 1.19769 1.19886 0.82287 0.87555 0.83797 1.90577 1.55153 1.70199 1.31908 1.20556 1.03972 0.95575 0.92922 1.19583 0.92943 0.94724 0.95697 1.21039 0.97978 0.97721 0.95055 1.20954 0.96825 1.00263 0.93731 1.21575 0.98428 1.06053 0.91244 1.96619 1.99145 1.86969 1.15701 1.20831 0.97179 0.98031 0.95304 1.19685 0.96238 0.97676 0.93024 1.20849 0.94156 1.00554 1.01666 0.92625 0.89603 0.93158 0.85901 0.90093 0.91563 0.88431 0.88526 0.85268 0.85517 0.85517 0.90465 0.90810 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 10.56 101.05 1.07 1.83 16 2 O -0.38 -8.07 10.57 -39.25 -0.41 -8.49 16 3 C 0.48 11.87 6.13 36.01 0.22 12.09 16 4 O -0.50 -13.71 15.79 -18.75 -0.30 -14.00 16 5 C 0.16 3.67 5.14 -5.19 -0.03 3.64 16 6 N -0.43 -10.24 2.18 -116.09 -0.25 -10.49 16 7 C -0.34 -8.00 9.15 -14.93 -0.14 -8.13 16 8 H 0.10 2.25 6.55 -52.48 -0.34 1.90 16 9 C 0.04 0.92 4.90 -17.47 -0.09 0.84 16 10 N -0.87 -21.69 9.24 55.50 0.51 -21.18 16 11 Si 0.92 18.32 29.60 -169.99 -5.03 13.29 16 12 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 13 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 14 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 15 C 0.48 10.89 7.42 -10.98 -0.08 10.81 16 16 O -0.59 -15.00 15.71 5.55 0.09 -14.91 16 17 C -0.09 -1.69 3.78 -29.03 -0.11 -1.80 16 18 C -0.03 -0.50 4.37 -104.62 -0.46 -0.96 16 19 C -0.10 -1.63 9.68 -39.59 -0.38 -2.01 16 20 C -0.10 -1.46 9.79 -39.56 -0.39 -1.85 16 21 C -0.09 -1.37 6.22 -39.52 -0.25 -1.62 16 22 Br -0.07 -0.86 33.70 -68.01 -2.29 -3.16 16 23 C -0.09 -1.37 9.44 -39.56 -0.37 -1.74 16 24 C -0.07 -1.03 5.88 -104.63 -0.62 -1.65 16 25 C -0.12 -1.59 9.60 36.01 0.35 -1.25 16 26 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 27 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 29 H 0.12 2.84 6.34 -51.93 -0.33 2.51 16 30 H 0.08 1.77 7.61 -51.93 -0.40 1.38 16 31 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 32 H 0.10 1.80 8.01 -51.93 -0.42 1.39 16 33 H 0.10 1.60 5.70 -51.93 -0.30 1.30 16 34 H 0.13 2.03 8.06 -52.49 -0.42 1.60 16 35 H 0.13 1.63 8.06 -52.49 -0.42 1.20 16 36 H 0.13 1.59 8.06 -52.48 -0.42 1.16 16 37 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.07 0.99 6.03 -51.93 -0.31 0.68 16 39 H 0.06 0.70 8.09 -51.92 -0.42 0.28 16 LS Contribution 353.53 15.07 5.33 5.33 Total: -1.00 -30.21 353.53 -8.24 -38.45 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -4.61 Total: 6.95 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: -1.27 Total: 8.20 kcal Atomic # 7 Polarization: -31.93 SS G_CDS: 0.26 Total: -31.67 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -0.62 Total: -37.40 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Atomic # 35 Polarization: -0.86 SS G_CDS: -2.29 Total: -3.16 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.21 -8.24 -38.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095995221.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.936 kcal (2) G-P(sol) polarization free energy of solvation -30.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds