Wall clock time and date at job start Tue Mar 31 2020 05:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99747 * 2 1 4 4 H 1.48498 * 109.47142 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46949 * 299.99645 * 3 2 1 6 6 H 1.48498 * 109.47366 * 60.00067 * 3 2 1 7 7 C 1.37879 * 120.00337 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00079 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99905 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47006 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47001 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.47107 * 179.97438 * 11 10 9 13 13 C 1.46900 * 110.99871 * 180.02562 * 12 11 10 14 14 H 1.09001 * 109.47592 * 35.00604 * 13 12 11 15 15 C 1.53003 * 109.46815 * 155.00412 * 13 12 11 16 16 N 1.46508 * 109.46975 * 294.99814 * 15 13 12 17 17 C 1.36030 * 126.34840 * 265.02699 * 16 15 13 18 18 N 1.30106 * 110.09912 * 180.02562 * 17 16 15 19 19 C 1.35779 * 109.64244 * 0.02562 * 18 17 16 20 20 C 1.39747 * 133.59841 * 180.02562 * 19 18 17 21 21 C 1.36615 * 119.87805 * 179.22940 * 20 19 18 22 22 C 1.38772 * 120.67004 * 0.62406 * 21 20 19 23 23 C 1.37853 * 120.45372 * 359.60882 * 22 21 20 24 24 C 1.38050 * 126.34544 * 84.71972 * 16 15 13 25 25 C 1.50699 * 109.47452 * 275.00008 * 13 12 11 26 26 C 1.38247 * 119.97465 * 319.72965 * 25 13 12 27 27 C 1.38190 * 120.02973 * 180.27547 * 26 25 13 28 28 C 1.38466 * 119.97055 * 359.97438 * 27 26 25 29 29 F 1.35097 * 120.02197 * 179.97438 * 28 27 26 30 30 C 1.38454 * 119.94878 * 0.02562 * 28 27 26 31 31 C 1.38192 * 119.97677 * 0.02562 * 30 28 27 32 32 H 0.96999 * 120.00459 * 359.97438 * 1 2 3 33 33 H 1.08999 * 109.47170 * 60.00123 * 9 7 2 34 34 H 1.09001 * 109.47197 * 300.00080 * 9 7 2 35 35 H 1.09000 * 109.47540 * 60.00173 * 10 9 7 36 36 H 1.08994 * 109.47221 * 299.99688 * 10 9 7 37 37 H 1.08999 * 109.47100 * 60.00208 * 11 10 9 38 38 H 1.09001 * 109.47273 * 300.00162 * 11 10 9 39 39 H 1.00906 * 110.99635 * 56.04958 * 12 11 10 40 40 H 1.08996 * 109.47389 * 55.00041 * 15 13 12 41 41 H 1.09003 * 109.47285 * 175.00219 * 15 13 12 42 42 H 1.08009 * 124.95270 * 0.02562 * 17 16 15 43 43 H 1.07994 * 120.05976 * 359.94666 * 20 19 18 44 44 H 1.07995 * 119.66133 * 180.22868 * 21 20 19 45 45 H 1.08006 * 119.77248 * 179.62185 * 22 21 20 46 46 H 1.08001 * 120.15822 * 180.02562 * 23 22 21 47 47 H 1.08003 * 119.98380 * 0.24954 * 26 25 13 48 48 H 1.08005 * 120.01789 * 180.02562 * 27 26 25 49 49 H 1.08001 * 120.01228 * 179.97438 * 30 28 27 50 50 H 1.07998 * 119.99239 * 179.97438 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 6 1.4805 -4.9870 0.0033 12 7 2.4351 -6.1036 0.0024 13 6 1.7349 -7.3949 0.0035 14 1 0.8210 -7.3133 -0.5850 15 6 2.6404 -8.4666 -0.6068 16 7 2.8803 -8.1570 -2.0186 17 6 2.1875 -8.6488 -3.0809 18 7 2.6665 -8.1652 -4.1897 19 6 3.7007 -7.3297 -3.9141 20 6 4.5549 -6.5592 -4.7076 21 6 5.5171 -5.7871 -4.1207 22 6 5.6655 -5.7684 -2.7410 23 6 4.8374 -6.5241 -1.9389 24 6 3.8476 -7.3074 -2.5169 25 6 1.3882 -7.7772 1.4194 26 6 2.2949 -7.5500 2.4379 27 6 1.9804 -7.9054 3.7358 28 6 0.7563 -8.4887 4.0160 29 9 0.4480 -8.8370 5.2844 30 6 -0.1510 -8.7158 2.9951 31 6 0.1661 -8.3606 1.6978 32 1 -0.4851 0.8400 0.0004 33 1 0.6242 -2.5575 -0.8880 34 1 0.6248 -2.5563 0.8920 35 1 2.8728 -3.6039 0.8909 36 1 2.8713 -3.6046 -0.8890 37 1 0.8529 -5.0455 -0.8860 38 1 0.8548 -5.0442 0.8940 39 1 3.0711 -6.0361 0.7829 40 1 3.5903 -8.4869 -0.0728 41 1 2.1570 -9.4402 -0.5255 42 1 1.3603 -9.3401 -3.0137 43 1 4.4471 -6.5651 -5.7821 44 1 6.1729 -5.1902 -4.7370 45 1 6.4351 -5.1574 -2.2927 46 1 4.9569 -6.5057 -0.8656 47 1 3.2496 -7.0950 2.2191 48 1 2.6888 -7.7274 4.5315 49 1 -1.1059 -9.1711 3.2124 50 1 -0.5412 -8.5379 0.9012 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096012803.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:03 Heat of formation + Delta-G solvation = 47.652282 kcal Electronic energy + Delta-G solvation = -32476.039257 eV Core-core repulsion = 28189.802300 eV Total energy + Delta-G solvation = -4286.236956 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.176 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -49.18277 -42.04414 -39.95632 -37.31397 -36.77677 -34.59078 -33.31538 -32.05409 -31.54807 -30.31847 -30.04907 -29.16671 -27.95266 -25.89934 -24.07774 -23.44641 -23.12598 -22.43239 -21.89886 -21.27321 -20.40595 -19.97455 -18.13654 -17.36743 -17.14533 -16.63563 -16.30089 -16.27881 -15.87448 -15.68850 -15.49357 -15.05146 -14.87330 -14.41704 -14.29539 -14.04039 -13.94895 -13.84639 -13.71662 -13.51367 -13.40907 -12.99911 -12.54008 -12.45228 -12.29087 -11.91547 -11.83598 -11.75359 -11.48577 -11.45951 -11.31742 -11.21049 -10.89021 -10.63427 -10.51108 -10.28585 -9.83776 -9.75319 -9.48316 -9.38942 -9.07485 -8.95983 -8.49361 -8.35016 -8.17056 -7.90304 -5.99899 -4.01933 0.72377 0.86002 1.13151 1.72215 2.60804 2.92557 3.19918 3.31145 3.38654 3.42727 3.89795 3.98164 4.07749 4.24672 4.34526 4.36006 4.46635 4.51082 4.55609 4.69055 4.77416 4.84619 4.93589 5.09084 5.17028 5.18896 5.30952 5.36317 5.51099 5.58685 5.59025 5.61989 5.68544 5.70560 5.76294 5.80708 5.84822 5.87670 6.04247 6.23983 6.28234 6.50617 6.59978 6.63120 6.66503 6.67996 6.70601 7.02908 7.07723 7.12620 7.20241 7.37696 7.67208 7.81304 7.96295 7.99930 8.42989 9.05224 9.62255 11.11632 Molecular weight = 367.18amu Principal moments of inertia in cm(-1) A = 0.005003 B = 0.003670 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 5595.755343 B = 7627.055515 C =12081.955749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.104 4.104 11 C 0.064 3.936 12 N -0.673 5.673 13 C 0.110 3.890 14 H 0.094 0.906 15 C 0.130 3.870 16 N -0.479 5.479 17 C 0.249 3.751 18 N -0.499 5.499 19 C 0.036 3.964 20 C -0.072 4.072 21 C -0.128 4.128 22 C -0.109 4.109 23 C -0.080 4.080 24 C 0.076 3.924 25 C -0.122 4.122 26 C -0.083 4.083 27 C -0.147 4.147 28 C 0.098 3.902 29 F -0.140 7.140 30 C -0.151 4.151 31 C -0.078 4.078 32 H 0.259 0.741 33 H 0.015 0.985 34 H 0.012 0.988 35 H 0.043 0.957 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.027 0.973 39 H 0.337 0.663 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.206 0.794 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.125 0.875 46 H 0.121 0.879 47 H 0.134 0.866 48 H 0.137 0.863 49 H 0.136 0.864 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.909 -23.434 1.928 24.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.142 4.142 11 C -0.064 4.064 12 N -0.304 5.304 13 C -0.002 4.002 14 H 0.113 0.887 15 C 0.006 3.994 16 N -0.168 5.168 17 C -0.037 4.037 18 N -0.218 5.218 19 C -0.082 4.082 20 C -0.092 4.092 21 C -0.149 4.149 22 C -0.129 4.129 23 C -0.101 4.101 24 C -0.033 4.033 25 C -0.125 4.125 26 C -0.102 4.102 27 C -0.166 4.166 28 C 0.079 3.921 29 F -0.119 7.119 30 C -0.169 4.169 31 C -0.097 4.097 32 H 0.069 0.931 33 H 0.033 0.967 34 H 0.030 0.970 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.045 0.955 39 H 0.158 0.842 40 H 0.108 0.892 41 H 0.114 0.886 42 H 0.223 0.777 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.143 0.857 46 H 0.138 0.862 47 H 0.151 0.849 48 H 0.155 0.845 49 H 0.154 0.846 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.546 -23.508 0.577 24.160 hybrid contribution -0.055 1.144 2.204 2.483 sum 5.492 -22.364 2.780 23.196 Atomic orbital electron populations 1.69971 1.06080 1.26449 1.51086 1.25021 0.94821 0.99257 0.95363 0.86558 0.80170 0.83863 0.77566 1.19691 1.20982 1.21074 1.21262 0.93037 0.90976 1.50247 0.92643 1.19042 0.93965 0.91423 0.96983 1.21588 0.99155 0.92784 1.00638 1.22131 0.93952 0.90482 0.99863 1.60828 1.19736 1.00390 1.49418 1.20998 0.97586 0.90832 0.90810 0.88743 1.21791 1.01197 0.97781 0.78619 1.45149 1.27545 1.37283 1.06863 1.25186 0.98022 0.99424 0.81046 1.70397 1.11265 1.13586 1.26570 1.19020 0.97444 1.00612 0.91100 1.19928 0.94300 0.95840 0.99122 1.20590 0.99219 1.00062 0.94994 1.20878 0.99496 0.99021 0.93489 1.19882 0.94064 0.96645 0.99495 1.18683 0.94034 0.96844 0.93689 1.20631 0.94941 1.00244 0.96663 1.20826 0.99593 0.98207 0.91547 1.21138 0.96174 1.01088 0.98181 1.17766 0.95061 1.00130 0.79177 1.91508 1.93316 1.89946 1.37120 1.21165 1.00031 1.03214 0.92528 1.20934 0.96085 0.96684 0.96013 0.93101 0.96700 0.96959 0.93807 0.92439 0.91619 0.95511 0.84238 0.89238 0.88564 0.77716 0.86016 0.85867 0.85685 0.86151 0.84857 0.84524 0.84616 0.84841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.16 13.29 55.43 0.74 -26.43 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 7 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.47 16 10 C -0.10 -2.07 5.41 -26.73 -0.14 -2.21 16 11 C 0.06 1.02 5.48 -3.82 -0.02 1.00 16 12 N -0.67 -7.93 4.94 -107.95 -0.53 -8.46 16 13 C 0.11 0.99 2.46 -68.86 -0.17 0.82 16 14 H 0.09 0.94 7.66 -51.93 -0.40 0.54 16 15 C 0.13 0.97 5.78 -4.04 -0.02 0.95 16 16 N -0.48 -5.08 2.77 -115.79 -0.32 -5.40 16 17 C 0.25 2.69 12.49 -89.79 -1.12 1.57 16 18 N -0.50 -7.21 11.27 -12.05 -0.14 -7.35 16 19 C 0.04 0.53 7.23 -84.70 -0.61 -0.08 16 20 C -0.07 -0.98 10.05 -39.60 -0.40 -1.38 16 21 C -0.13 -1.56 9.96 -39.97 -0.40 -1.96 16 22 C -0.11 -1.31 10.03 -39.52 -0.40 -1.71 16 23 C -0.08 -0.99 9.45 -39.50 -0.37 -1.37 16 24 C 0.08 1.01 6.43 -83.99 -0.54 0.47 16 25 C -0.12 -1.03 4.71 -104.62 -0.49 -1.52 16 26 C -0.08 -0.70 9.11 -39.60 -0.36 -1.06 16 27 C -0.15 -1.31 10.03 -39.52 -0.40 -1.70 16 28 C 0.10 0.96 7.30 -39.42 -0.29 0.67 16 29 F -0.14 -1.51 17.27 2.25 0.04 -1.47 16 30 C -0.15 -1.29 10.03 -39.52 -0.40 -1.68 16 31 C -0.08 -0.63 9.67 -39.60 -0.38 -1.01 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.07 1.14 8.05 -51.93 -0.42 0.72 16 38 H 0.03 0.44 8.00 -51.93 -0.42 0.02 16 39 H 0.34 3.62 6.36 -39.29 -0.25 3.37 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.10 0.48 8.13 -51.93 -0.42 0.06 16 42 H 0.21 1.28 8.06 -52.48 -0.42 0.86 16 43 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 44 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 45 H 0.13 1.26 8.06 -52.48 -0.42 0.83 16 46 H 0.12 1.31 7.88 -52.49 -0.41 0.90 16 47 H 0.13 0.95 6.52 -52.48 -0.34 0.61 16 48 H 0.14 1.02 8.06 -52.48 -0.42 0.59 16 49 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 50 H 0.13 0.82 8.03 -52.49 -0.42 0.40 16 LS Contribution 421.31 15.07 6.35 6.35 Total: -1.00 -34.28 421.31 -13.22 -47.51 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -7.27 Total: 1.69 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: -7.06 Total: -23.22 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: -0.25 Total: -47.63 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -34.28 -13.22 -47.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096012803.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.162 kcal (2) G-P(sol) polarization free energy of solvation -34.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds