Wall clock time and date at job start Tue Mar 31 2020 05:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.47116 * 239.99922 * 3 2 1 5 5 H 1.48490 * 109.47381 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00523 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46769 * 180.02562 * 11 10 9 13 13 C 1.46906 * 110.99793 * 180.02562 * 12 11 10 14 14 H 1.09003 * 109.47279 * 325.00167 * 13 12 11 15 15 C 1.53000 * 109.47281 * 205.00148 * 13 12 11 16 16 N 1.46500 * 109.47085 * 65.00019 * 15 13 12 17 17 C 1.36039 * 126.34751 * 264.69118 * 16 15 13 18 18 N 1.30111 * 110.09761 * 179.87499 * 17 16 15 19 19 C 1.35781 * 109.64328 * 0.39301 * 18 17 16 20 20 C 1.39739 * 133.60111 * 179.74611 * 19 18 17 21 21 C 1.36606 * 119.88741 * 180.02562 * 20 19 18 22 22 C 1.38768 * 120.66881 * 359.95343 * 21 20 19 23 23 C 1.37855 * 120.45330 * 0.02562 * 22 21 20 24 24 C 1.38055 * 126.34951 * 85.00093 * 16 15 13 25 25 C 1.50700 * 109.46893 * 85.00437 * 13 12 11 26 26 C 1.38241 * 119.97626 * 39.72361 * 25 13 12 27 27 C 1.38203 * 120.02188 * 179.72713 * 26 25 13 28 28 C 1.38458 * 119.97822 * 0.52619 * 27 26 25 29 29 F 1.35091 * 120.02800 * 179.72502 * 28 27 26 30 30 C 1.38463 * 119.94459 * 359.74886 * 28 27 26 31 31 C 1.38193 * 119.97679 * 359.97438 * 30 28 27 32 32 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 33 33 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 34 34 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 35 35 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 36 36 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 37 37 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 38 38 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 39 39 H 1.00898 * 110.99877 * 56.04956 * 12 11 10 40 40 H 1.08996 * 109.47600 * 185.00056 * 15 13 12 41 41 H 1.09003 * 109.47172 * 305.00516 * 15 13 12 42 42 H 1.08003 * 124.95454 * 0.02562 * 17 16 15 43 43 H 1.08001 * 120.05958 * 0.02562 * 20 19 18 44 44 H 1.08005 * 119.66388 * 179.97438 * 21 20 19 45 45 H 1.08001 * 119.77601 * 180.02562 * 22 21 20 46 46 H 1.07995 * 120.15753 * 179.97438 * 23 22 21 47 47 H 1.08000 * 119.98445 * 359.97438 * 26 25 13 48 48 H 1.08005 * 120.01045 * 180.25721 * 27 26 25 49 49 H 1.08002 * 120.01228 * 179.97438 * 30 28 27 50 50 H 1.08000 * 119.99030 * 179.97438 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 7 2.4347 -6.1037 -0.0018 13 6 1.7343 -7.3950 -0.0018 14 1 0.8213 -7.3132 0.5880 15 6 2.6406 -8.4668 0.6072 16 7 2.8826 -8.1572 2.0186 17 6 3.9518 -7.4855 2.5248 18 7 3.8459 -7.3858 3.8177 19 6 2.7047 -7.9949 4.2305 20 6 2.1131 -8.1867 5.4819 21 6 0.9281 -8.8594 5.5787 22 6 0.3014 -9.3560 4.4445 23 6 0.8663 -9.1783 3.1996 24 6 2.0709 -8.4982 3.0820 25 6 1.3855 -7.7772 -1.4172 26 6 2.2862 -7.5397 -2.4387 27 6 1.9696 -7.8950 -3.7362 28 6 0.7455 -8.4791 -4.0145 29 9 0.4328 -8.8217 -5.2833 30 6 -0.1581 -8.7112 -2.9914 31 6 0.1629 -8.3604 -1.6938 32 1 -0.4849 0.8401 0.0004 33 1 0.6240 -2.5566 -0.8903 34 1 0.6246 -2.5571 0.8897 35 1 2.8725 -3.6048 0.8878 36 1 2.8712 -3.6040 -0.8921 37 1 0.8543 -5.0449 0.8894 38 1 0.8525 -5.0447 -0.8905 39 1 3.0701 -6.0366 0.7791 40 1 2.1570 -9.4403 0.5266 41 1 3.5898 -8.4871 0.0718 42 1 4.7683 -7.0903 1.9387 43 1 2.5918 -7.8037 6.3710 44 1 0.4742 -9.0059 6.5477 45 1 -0.6354 -9.8853 4.5377 46 1 0.3747 -9.5672 2.3202 47 1 3.2392 -7.0800 -2.2220 48 1 2.6752 -7.7132 -4.5335 49 1 -1.1134 -9.1664 -3.2073 50 1 -0.5419 -8.5410 -0.8957 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096012804.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:08 Heat of formation + Delta-G solvation = 45.905937 kcal Electronic energy + Delta-G solvation = -32107.566694 eV Core-core repulsion = 27821.254010 eV Total energy + Delta-G solvation = -4286.312684 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.176 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -49.05419 -42.38514 -39.70344 -37.68224 -36.80499 -34.72410 -33.37142 -32.07164 -31.33422 -30.56094 -30.18741 -29.49178 -28.04159 -25.92396 -24.01283 -23.42464 -23.25606 -22.52041 -22.24455 -20.99979 -20.71455 -20.04374 -17.86745 -17.44579 -17.38918 -16.76864 -16.53506 -16.13472 -16.00348 -15.74749 -15.52420 -15.11522 -14.79627 -14.50474 -14.42280 -14.11159 -14.08698 -13.99523 -13.74997 -13.69132 -13.31848 -12.91529 -12.54828 -12.43463 -12.31901 -12.15336 -12.07339 -11.82286 -11.63105 -11.50777 -11.43974 -11.15230 -10.83363 -10.62973 -10.62330 -10.51356 -10.09872 -9.75563 -9.38639 -9.28493 -9.09701 -8.80966 -8.58886 -8.47593 -8.34251 -8.28295 -5.99537 -4.01919 0.76909 0.89814 1.06360 1.34132 2.32940 2.62466 3.34090 3.35695 3.38257 3.40829 3.72101 3.88755 4.07718 4.10780 4.29463 4.43147 4.47058 4.50148 4.57423 4.63015 4.72102 4.78136 4.83649 4.88648 5.10734 5.20082 5.23227 5.25579 5.30729 5.36337 5.41659 5.53624 5.66370 5.69328 5.78305 5.81579 5.92897 5.93068 6.07999 6.21412 6.22357 6.28745 6.32878 6.34623 6.60921 6.65225 6.67892 6.69198 6.90169 7.06161 7.09848 7.33204 7.66376 7.70185 7.80524 7.99871 8.42610 9.04711 9.62143 11.11884 Molecular weight = 367.18amu Principal moments of inertia in cm(-1) A = 0.005001 B = 0.003274 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 5597.093007 B = 8550.350362 C =12862.588229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.105 4.105 11 C 0.062 3.938 12 N -0.680 5.680 13 C 0.111 3.889 14 H 0.061 0.939 15 C 0.113 3.887 16 N -0.493 5.493 17 C 0.261 3.739 18 N -0.492 5.492 19 C 0.045 3.955 20 C -0.063 4.063 21 C -0.130 4.130 22 C -0.103 4.103 23 C -0.110 4.110 24 C 0.048 3.952 25 C -0.087 4.087 26 C -0.051 4.051 27 C -0.158 4.158 28 C 0.098 3.902 29 F -0.143 7.143 30 C -0.157 4.157 31 C -0.084 4.084 32 H 0.261 0.739 33 H 0.015 0.985 34 H 0.013 0.987 35 H 0.045 0.955 36 H 0.057 0.943 37 H 0.025 0.975 38 H 0.069 0.931 39 H 0.338 0.662 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.216 0.784 43 H 0.128 0.872 44 H 0.128 0.872 45 H 0.128 0.872 46 H 0.120 0.880 47 H 0.144 0.856 48 H 0.135 0.865 49 H 0.133 0.867 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.462 -25.894 1.397 26.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.143 4.143 11 C -0.066 4.066 12 N -0.312 5.312 13 C -0.001 4.001 14 H 0.079 0.921 15 C -0.010 4.010 16 N -0.183 5.183 17 C -0.024 4.024 18 N -0.210 5.210 19 C -0.073 4.073 20 C -0.082 4.082 21 C -0.151 4.151 22 C -0.122 4.122 23 C -0.131 4.131 24 C -0.061 4.061 25 C -0.089 4.089 26 C -0.069 4.069 27 C -0.177 4.177 28 C 0.078 3.922 29 F -0.121 7.121 30 C -0.176 4.176 31 C -0.103 4.103 32 H 0.070 0.930 33 H 0.034 0.966 34 H 0.031 0.969 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.043 0.957 38 H 0.088 0.912 39 H 0.158 0.842 40 H 0.115 0.885 41 H 0.126 0.874 42 H 0.232 0.768 43 H 0.146 0.854 44 H 0.146 0.854 45 H 0.146 0.854 46 H 0.138 0.862 47 H 0.161 0.839 48 H 0.153 0.847 49 H 0.151 0.849 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.941 -25.399 1.105 25.593 hybrid contribution -0.632 0.652 -0.077 0.911 sum 2.310 -24.748 1.028 24.876 Atomic orbital electron populations 1.69958 1.06076 1.26692 1.50825 1.25024 0.94843 0.99260 0.95310 0.86657 0.79594 0.83116 0.78645 1.20208 1.21293 1.20217 1.21192 0.92986 0.91007 1.50631 0.92721 1.19037 0.93947 0.91336 0.97055 1.21611 0.99218 0.92794 1.00690 1.22173 0.93954 0.90434 1.00033 1.60689 1.20410 1.00562 1.49535 1.20719 0.96541 0.90437 0.92363 0.92125 1.22085 1.02435 0.99029 0.77414 1.45508 1.19381 1.46880 1.06567 1.25462 0.91707 0.94574 0.90669 1.70490 1.18847 1.22138 1.09545 1.19093 0.93473 1.01118 0.93572 1.20056 0.95047 0.98255 0.94889 1.20645 0.95619 0.99942 0.98866 1.20883 0.99779 1.00054 0.91534 1.19946 0.93405 1.01378 0.98392 1.18903 0.95685 1.03481 0.88002 1.19661 0.94507 0.99881 0.94854 1.20949 1.00268 0.95227 0.90496 1.21231 0.96152 1.01709 0.98560 1.17787 0.95120 1.00257 0.79002 1.91492 1.93246 1.90158 1.37224 1.21050 1.00068 1.04069 0.92399 1.20881 0.96016 0.97386 0.95978 0.92970 0.96642 0.96899 0.93662 0.92458 0.95666 0.91225 0.84250 0.88530 0.87406 0.76814 0.85397 0.85427 0.85380 0.86211 0.83869 0.84720 0.84860 0.85324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -14.86 9.11 -34.44 -0.31 -15.18 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.11 -2.12 5.41 -26.73 -0.14 -2.27 16 11 C 0.06 1.02 5.48 -3.82 -0.02 1.00 16 12 N -0.68 -8.30 5.54 -107.94 -0.60 -8.89 16 13 C 0.11 1.08 2.48 -68.86 -0.17 0.91 16 14 H 0.06 0.68 7.66 -51.93 -0.40 0.28 16 15 C 0.11 0.85 5.67 -4.04 -0.02 0.82 16 16 N -0.49 -4.84 2.59 -115.79 -0.30 -5.14 16 17 C 0.26 2.76 10.85 -89.78 -0.97 1.78 16 18 N -0.49 -6.73 11.27 -12.05 -0.14 -6.87 16 19 C 0.05 0.60 7.23 -84.70 -0.61 -0.01 16 20 C -0.06 -0.72 10.05 -39.61 -0.40 -1.12 16 21 C -0.13 -1.21 9.96 -39.98 -0.40 -1.61 16 22 C -0.10 -0.91 10.03 -39.53 -0.40 -1.30 16 23 C -0.11 -1.07 10.05 -39.50 -0.40 -1.47 16 24 C 0.05 0.55 6.87 -83.99 -0.58 -0.02 16 25 C -0.09 -0.85 4.71 -104.62 -0.49 -1.34 16 26 C -0.05 -0.50 9.32 -39.59 -0.37 -0.87 16 27 C -0.16 -1.58 10.03 -39.51 -0.40 -1.97 16 28 C 0.10 1.04 7.30 -39.42 -0.29 0.75 16 29 F -0.14 -1.64 17.27 2.25 0.04 -1.60 16 30 C -0.16 -1.49 10.03 -39.51 -0.40 -1.89 16 31 C -0.08 -0.77 9.67 -39.59 -0.38 -1.15 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.03 0.44 8.06 -51.93 -0.42 0.02 16 38 H 0.07 1.20 8.00 -51.93 -0.42 0.79 16 39 H 0.34 4.04 6.38 -39.29 -0.25 3.79 16 40 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.11 0.63 8.13 -51.93 -0.42 0.21 16 42 H 0.22 1.49 8.04 -52.48 -0.42 1.07 16 43 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 44 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 45 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 46 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 47 H 0.14 1.33 7.71 -52.49 -0.40 0.93 16 48 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 49 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 50 H 0.13 0.95 8.04 -52.49 -0.42 0.53 16 LS Contribution 422.62 15.07 6.37 6.37 Total: -1.00 -33.78 422.62 -13.24 -47.02 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -7.35 Total: 1.65 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: -6.99 Total: -22.90 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: -0.30 Total: -47.41 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -33.78 -13.24 -47.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096012804.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.927 kcal (2) G-P(sol) polarization free energy of solvation -33.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds