Wall clock time and date at job start Tue Mar 31 2020 07:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86803 * 120.00390 * 2 1 4 4 H 1.48498 * 109.46965 * 270.00296 * 3 2 1 5 5 H 1.48507 * 109.46850 * 30.00085 * 3 2 1 6 6 H 1.48498 * 109.47277 * 149.99885 * 3 2 1 7 7 C 1.38656 * 120.00132 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99791 * 359.97438 * 7 2 1 9 9 O 1.34824 * 120.00668 * 180.02562 * 7 2 1 10 10 C 1.35756 * 117.00451 * 174.92519 * 9 7 2 11 11 C 1.39102 * 119.97188 * 185.63742 * 10 9 7 12 12 C 1.38292 * 120.32567 * 180.02562 * 11 10 9 13 13 C 1.37906 * 120.27174 * 359.78494 * 12 11 10 14 14 C 1.40117 * 119.93727 * 0.47046 * 13 12 11 15 15 C 1.46692 * 120.16135 * 179.78313 * 14 13 12 16 16 C 1.37736 * 119.99803 * 5.50820 * 15 14 13 17 17 N 1.36437 * 127.29138 * 355.14359 * 16 15 14 18 18 C 1.30421 * 109.09761 * 180.11816 * 17 16 15 19 19 C 1.47661 * 124.20498 * 179.88785 * 18 17 16 20 20 C 1.39684 * 120.14580 * 359.74668 * 19 18 17 21 21 C 1.37922 * 119.87076 * 179.97438 * 20 19 18 22 22 C 1.38370 * 120.16983 * 359.72173 * 21 20 19 23 23 C 1.38475 * 120.29494 * 0.55612 * 22 21 20 24 24 Cl 1.73602 * 119.93676 * 179.71584 * 23 22 21 25 25 C 1.38078 * 120.12479 * 359.44669 * 23 22 21 26 26 O 1.34699 * 111.59400 * 359.61942 * 18 17 16 27 27 C 1.35042 * 108.68566 * 0.23241 * 26 18 17 28 28 O 1.21649 * 127.40153 * 179.97438 * 27 26 18 29 29 C 1.38459 * 119.97274 * 5.66135 * 10 9 7 30 30 H 0.96995 * 119.99650 * 359.97438 * 1 2 3 31 31 H 1.07991 * 119.83527 * 0.02607 * 11 10 9 32 32 H 1.08002 * 119.86622 * 180.02562 * 12 11 10 33 33 H 1.08002 * 120.03170 * 180.24804 * 13 12 11 34 34 H 1.07998 * 119.99755 * 185.50425 * 15 14 13 35 35 H 1.07997 * 120.06811 * 0.02562 * 20 19 18 36 36 H 1.08009 * 119.91267 * 179.97438 * 21 20 19 37 37 H 1.08004 * 119.85765 * 180.26986 * 22 21 20 38 38 H 1.08001 * 120.08407 * 180.29835 * 25 23 22 39 39 H 1.07998 * 120.13575 * 0.02562 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6527 0.7001 6 1 3.5472 1.4401 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 1.4688 -2.1361 -0.0005 9 8 3.3571 -1.2009 0.0000 10 6 3.9734 -2.4058 0.1064 11 6 5.3573 -2.4700 0.2314 12 6 5.9927 -3.6935 0.3398 13 6 5.2590 -4.8611 0.3293 14 6 3.8649 -4.8099 0.1985 15 6 3.0801 -6.0491 0.1820 16 6 3.6984 -7.2589 0.4086 17 7 5.0337 -7.4871 0.5712 18 6 5.2284 -8.7624 0.7626 19 6 6.5542 -9.3772 0.9740 20 6 7.7037 -8.5836 0.9725 21 6 8.9392 -9.1636 1.1711 22 6 9.0418 -10.5280 1.3773 23 6 7.9073 -11.3222 1.3745 24 17 8.0475 -13.0340 1.6269 25 6 6.6644 -10.7543 1.1768 26 8 4.0693 -9.4484 0.7491 27 6 3.0563 -8.5819 0.5328 28 8 1.8693 -8.8371 0.4561 29 6 3.2239 -3.5699 0.0899 30 1 -0.4849 0.8400 0.0004 31 1 5.9384 -1.5598 0.2439 32 1 7.0675 -3.7346 0.4369 33 1 5.7589 -5.8144 0.4182 34 1 2.0176 -6.0129 -0.0077 35 1 7.6252 -7.5177 0.8170 36 1 9.8285 -8.5507 1.1696 37 1 10.0113 -10.9764 1.5366 38 1 5.7796 -11.3736 1.1796 39 1 2.1495 -3.5217 -0.0079 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096130175.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:04 Heat of formation + Delta-G solvation = 16.480845 kcal Electronic energy + Delta-G solvation = -28201.065469 eV Core-core repulsion = 23874.709679 eV Total energy + Delta-G solvation = -4326.355789 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 369.060 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.01518 -39.71243 -39.39984 -38.08714 -37.17830 -36.92292 -35.42117 -33.07529 -32.47471 -31.84909 -31.20848 -29.54156 -28.69690 -26.13372 -25.34024 -23.66936 -23.37971 -22.17340 -21.94934 -21.19947 -20.17569 -18.31328 -17.84344 -17.36295 -17.24963 -17.00943 -16.36289 -15.92629 -15.49132 -15.35561 -15.18210 -14.68096 -14.31745 -14.20146 -14.17026 -14.03794 -13.87475 -13.56141 -13.27521 -12.88331 -12.50959 -12.43443 -12.39890 -12.29328 -12.04287 -12.01355 -11.74343 -11.54504 -11.40773 -11.09036 -10.94655 -10.82989 -10.36288 -9.99473 -9.91194 -9.61388 -9.37032 -9.15467 -8.95372 -7.89539 -7.52811 -6.52679 -4.21574 -0.51256 0.51055 0.66996 1.60508 1.86068 2.07947 2.09739 2.20868 2.89227 3.15164 3.17954 3.22749 3.31293 3.47093 3.66046 4.13535 4.29179 4.30058 4.43131 4.60619 4.63745 4.75200 4.79755 4.91669 4.97772 5.04325 5.13399 5.30063 5.46798 5.54464 5.65688 5.69280 5.75027 5.80879 5.90571 5.91136 6.12264 6.16336 6.35763 6.42153 6.91103 6.95596 6.97380 7.02948 7.30911 7.37705 7.60613 7.88385 8.81459 9.40043 10.54513 Molecular weight = 369.06amu Principal moments of inertia in cm(-1) A = 0.018941 B = 0.001865 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.887264 B =15008.827641 C =16445.268913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.395 4.395 8 H 0.106 0.894 9 O -0.215 6.215 10 C 0.139 3.861 11 C -0.147 4.147 12 C -0.102 4.102 13 C -0.148 4.148 14 C -0.083 4.083 15 C 0.130 3.870 16 C -0.137 4.137 17 N -0.438 5.438 18 C 0.303 3.697 19 C -0.016 4.016 20 C -0.060 4.060 21 C -0.109 4.109 22 C -0.088 4.088 23 C -0.040 4.040 24 Cl -0.063 7.063 25 C -0.074 4.074 26 O -0.291 6.291 27 C 0.486 3.514 28 O -0.431 6.431 29 C -0.172 4.172 30 H 0.281 0.719 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.162 0.838 34 H 0.155 0.845 35 H 0.150 0.850 36 H 0.144 0.856 37 H 0.139 0.861 38 H 0.145 0.855 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.685 -19.636 2.382 27.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.470 4.470 8 H 0.123 0.877 9 O -0.120 6.120 10 C 0.087 3.913 11 C -0.166 4.166 12 C -0.120 4.120 13 C -0.167 4.167 14 C -0.083 4.083 15 C 0.111 3.889 16 C -0.244 4.244 17 N -0.167 5.167 18 C 0.091 3.909 19 C -0.017 4.017 20 C -0.079 4.079 21 C -0.127 4.127 22 C -0.108 4.108 23 C -0.067 4.067 24 Cl -0.034 7.034 25 C -0.095 4.095 26 O -0.194 6.194 27 C 0.329 3.671 28 O -0.315 6.315 29 C -0.192 4.192 30 H 0.091 0.909 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.179 0.821 34 H 0.172 0.828 35 H 0.167 0.833 36 H 0.162 0.838 37 H 0.157 0.843 38 H 0.163 0.837 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 18.314 -18.991 2.311 26.484 hybrid contribution -0.692 0.003 0.021 0.692 sum 17.623 -18.988 2.332 26.010 Atomic orbital electron populations 1.69639 1.05577 1.28700 1.47301 1.24471 0.95035 0.98922 0.95443 0.86168 0.80294 0.81350 0.79017 1.19812 1.20723 1.18341 1.20716 0.76710 0.96641 1.52978 0.87673 1.83602 1.22718 1.25084 1.80619 1.18924 0.91723 0.85581 0.95028 1.20646 0.92005 0.98483 1.05456 1.20753 0.99187 0.91583 1.00474 1.22235 0.92898 1.00303 1.01257 1.18622 0.93753 0.90794 1.05127 1.23015 0.99290 0.88605 0.77992 1.21445 0.89860 0.94521 1.18560 1.70952 1.15913 1.12284 1.17529 1.23097 0.85648 0.86113 0.96053 1.17297 0.87027 0.92323 1.05065 1.21413 0.90351 1.01210 0.94942 1.21123 0.97899 0.94100 0.99545 1.21327 0.97886 0.93706 0.97856 1.20720 0.94643 0.85774 1.05558 1.98395 1.98280 1.11591 1.95099 1.21186 0.97278 0.93761 0.97238 1.84991 1.17251 1.39655 1.77507 1.21817 0.85020 0.85349 0.74928 1.90983 1.10853 1.83330 1.46313 1.21626 1.01325 0.90870 1.05354 0.90881 0.86009 0.86090 0.82121 0.82751 0.83271 0.83793 0.84280 0.83719 0.84076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.34 13.96 55.48 0.77 -23.57 16 2 C 0.07 1.76 5.49 -17.51 -0.10 1.66 16 3 Si 0.91 20.73 28.62 -169.99 -4.86 15.87 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.26 -5.92 7.11 56.52 0.40 -5.51 16 7 C -0.40 -10.50 9.94 30.89 0.31 -10.19 16 8 H 0.11 2.82 5.43 -52.48 -0.29 2.54 16 9 O -0.21 -5.28 8.58 0.05 0.00 -5.28 16 10 C 0.14 2.92 6.64 -39.18 -0.26 2.66 16 11 C -0.15 -2.57 9.99 -39.24 -0.39 -2.96 16 12 C -0.10 -1.50 10.02 -39.68 -0.40 -1.90 16 13 C -0.15 -2.26 9.32 -39.00 -0.36 -2.62 16 14 C -0.08 -1.37 5.86 -105.12 -0.62 -1.98 16 15 C 0.13 1.90 10.02 -36.35 -0.36 1.53 16 16 C -0.14 -1.99 6.84 -82.19 -0.56 -2.55 16 17 N -0.44 -5.77 7.26 -7.85 -0.06 -5.83 16 18 C 0.30 3.63 7.77 -14.30 -0.11 3.52 16 19 C -0.02 -0.14 5.87 -104.99 -0.62 -0.76 16 20 C -0.06 -0.44 9.66 -39.16 -0.38 -0.82 16 21 C -0.11 -0.58 10.03 -39.65 -0.40 -0.98 16 22 C -0.09 -0.50 9.82 -39.45 -0.39 -0.89 16 23 C -0.04 -0.29 6.31 -39.55 -0.25 -0.54 16 24 Cl -0.06 -0.45 28.95 -51.86 -1.50 -1.95 16 25 C -0.07 -0.62 9.47 -39.12 -0.37 -0.99 16 26 O -0.29 -3.92 10.34 -21.53 -0.22 -4.15 16 27 C 0.49 7.35 8.88 34.55 0.31 7.66 16 28 O -0.43 -7.43 18.05 -18.83 -0.34 -7.77 16 29 C -0.17 -3.34 8.92 -38.84 -0.35 -3.69 16 30 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.12 1.95 8.06 -52.49 -0.42 1.52 16 32 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.16 2.20 4.68 -52.49 -0.25 1.96 16 34 H 0.15 1.99 8.06 -52.49 -0.42 1.56 16 35 H 0.15 1.04 7.76 -52.49 -0.41 0.63 16 36 H 0.14 0.41 8.06 -52.48 -0.42 -0.01 16 37 H 0.14 0.51 8.06 -52.48 -0.42 0.09 16 38 H 0.15 1.17 7.83 -52.49 -0.41 0.76 16 39 H 0.14 2.84 5.63 -52.49 -0.30 2.54 16 LS Contribution 367.88 15.07 5.54 5.54 Total: -1.00 -29.79 367.88 -8.86 -38.65 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -2.89 Total: 2.33 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -5.30 Total: -13.85 kcal Atomic # 7 Polarization: -30.12 SS G_CDS: 0.72 Total: -29.40 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.56 Total: -17.20 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.86 Total: 15.87 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.50 Total: -1.95 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.79 -8.86 -38.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096130175.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.130 kcal (2) G-P(sol) polarization free energy of solvation -29.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds