Wall clock time and date at job start Tue Mar 31 2020 06:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99949 * 2 1 4 4 C 1.52998 * 109.47454 * 180.02562 * 3 2 1 5 5 O 1.42896 * 109.47147 * 64.99236 * 4 3 2 6 6 C 1.35726 * 117.00047 * 180.02562 * 5 4 3 7 7 C 1.39014 * 119.90826 * 359.73042 * 6 5 4 8 8 C 1.37692 * 120.08755 * 179.72384 * 7 6 5 9 9 C 1.39752 * 119.91286 * 0.57191 * 8 7 6 10 10 C 1.47700 * 120.09051 * 179.72449 * 9 8 7 11 11 O 1.21804 * 119.99486 * 179.97438 * 10 9 8 12 12 C 1.41785 * 120.00178 * 359.97438 * 10 9 8 13 13 C 1.35294 * 120.00046 * 186.82726 * 12 10 9 14 14 C 1.46780 * 120.00052 * 12.25967 * 13 12 10 15 15 C 1.39986 * 120.23096 * 46.93307 * 14 13 12 16 16 C 1.37726 * 119.89076 * 179.74620 * 15 14 13 17 17 C 1.38654 * 120.35550 * 0.53297 * 16 15 14 18 18 C 1.38053 * 120.47206 * 359.73992 * 17 16 15 19 19 C 1.38775 * 120.10125 * 359.97438 * 18 17 16 20 20 O 1.35487 * 120.18207 * 180.02562 * 19 18 17 21 21 C 1.34759 * 117.00249 * 354.41194 * 20 19 18 22 22 H 1.08009 * 119.99566 * 5.08808 * 21 20 19 23 23 C 1.38746 * 120.00607 * 185.09742 * 21 20 19 24 24 N 1.31491 * 119.99687 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00295 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46910 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47477 * 119.99802 * 25 23 21 28 28 H 1.48499 * 109.47075 * 239.99921 * 25 23 21 29 29 C 1.39761 * 119.82206 * 359.70113 * 9 8 7 30 30 C 1.37701 * 119.90942 * 0.02562 * 29 9 8 31 31 H 1.09003 * 109.47168 * 60.00641 * 1 2 3 32 32 H 1.09004 * 109.46583 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47366 * 300.00287 * 1 2 3 34 34 H 1.09000 * 109.47374 * 59.99739 * 3 2 1 35 35 H 1.09003 * 109.46718 * 299.99513 * 3 2 1 36 36 H 1.09011 * 109.46575 * 304.99670 * 4 3 2 37 37 H 1.08991 * 109.47250 * 184.99975 * 4 3 2 38 38 H 1.08008 * 119.95560 * 359.97438 * 7 6 5 39 39 H 1.08006 * 120.04162 * 180.24998 * 8 7 6 40 40 H 1.08000 * 120.00077 * 6.82783 * 12 10 9 41 41 H 1.08001 * 119.99872 * 192.25544 * 13 12 10 42 42 H 1.07999 * 120.05338 * 0.02562 * 15 14 13 43 43 H 1.07997 * 119.81990 * 180.27618 * 16 15 14 44 44 H 1.08004 * 119.76078 * 179.76616 * 17 16 15 45 45 H 1.08000 * 119.94973 * 179.97438 * 18 17 16 46 46 H 0.96997 * 119.99892 * 180.02562 * 24 23 21 47 47 H 1.07994 * 120.05120 * 179.97438 * 29 9 8 48 48 H 1.07996 * 119.95545 * 179.97438 * 30 29 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 8 3.9648 0.5797 -1.2219 6 6 5.3002 0.3981 -1.3834 7 6 6.1802 0.8011 -0.3855 8 6 7.5351 0.6135 -0.5431 9 6 8.0262 0.0280 -1.7132 10 6 9.4794 -0.1695 -1.8888 11 8 9.9055 -0.6804 -2.9092 12 6 10.3782 0.2355 -0.8699 13 6 11.7129 0.1831 -1.0851 14 6 12.2296 -0.0305 -2.4422 15 6 11.7178 0.7080 -3.5156 16 6 12.2114 0.5056 -4.7854 17 6 13.2060 -0.4343 -5.0090 18 6 13.7175 -1.1748 -3.9622 19 6 13.2383 -0.9824 -2.6740 20 8 13.7396 -1.7079 -1.6454 21 6 14.6189 -2.6812 -1.9544 22 1 14.9566 -2.8002 -2.9734 23 6 15.0902 -3.5307 -0.9638 24 7 14.6792 -3.3856 0.2768 25 14 16.3095 -4.8793 -1.3921 26 1 16.6107 -4.8310 -2.8455 27 1 17.5617 -4.6782 -0.6197 28 1 15.7251 -6.2014 -1.0519 29 6 7.1386 -0.3706 -2.7164 30 6 5.7846 -0.1846 -2.5488 31 1 -0.3634 0.5137 -0.8901 32 1 -0.3632 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.6886 1.8464 0.8899 35 1 1.6886 1.8463 -0.8901 36 1 3.8514 0.5683 0.8411 37 1 3.9784 2.1766 0.0889 38 1 5.8002 1.2582 0.5163 39 1 8.2179 0.9232 0.2344 40 1 9.9975 0.5859 0.0781 41 1 12.3982 0.2985 -0.2583 42 1 10.9402 1.4385 -3.3477 43 1 11.8188 1.0792 -5.6120 44 1 13.5834 -0.5878 -6.0092 45 1 14.4918 -1.9050 -4.1460 46 1 15.0089 -3.9792 0.9695 47 1 7.5141 -0.8230 -3.6223 48 1 5.0980 -0.4919 -3.3238 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096307364.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:45 Heat of formation + Delta-G solvation = -58.740774 kcal Electronic energy + Delta-G solvation = -31238.758095 eV Core-core repulsion = 26805.523387 eV Total energy + Delta-G solvation = -4433.234708 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 368.150 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.48622 -39.60350 -38.73222 -38.17396 -36.98592 -36.18190 -33.31183 -32.30394 -31.80953 -30.90804 -30.21648 -29.10477 -28.47528 -26.82331 -25.36632 -24.76916 -23.72542 -22.87710 -21.82583 -21.25259 -20.66357 -18.63712 -18.46570 -17.97699 -17.30230 -17.14913 -16.66035 -16.10978 -16.01898 -15.55527 -15.22903 -15.00009 -14.70661 -14.67708 -14.37894 -13.92391 -13.87536 -13.71938 -13.57968 -13.51602 -13.28267 -12.92169 -12.81122 -12.68021 -12.41491 -12.35162 -12.07108 -11.93790 -11.70944 -11.69893 -11.33070 -11.10902 -10.96049 -10.86052 -10.69492 -10.60662 -10.43162 -10.19615 -9.49650 -9.25117 -9.13904 -9.04935 -8.85423 -8.28695 -7.58498 -7.07540 -6.48233 -4.04911 0.72781 1.28391 1.52532 2.48948 2.54595 2.83363 3.12119 3.14100 3.19010 3.23362 3.36485 3.94969 4.10046 4.36095 4.58624 4.59954 4.63940 4.65001 4.70592 4.76642 4.84805 4.91292 4.92987 5.05276 5.10603 5.24091 5.24189 5.27649 5.31423 5.46123 5.52951 5.67839 5.77510 5.83045 5.91142 5.96532 6.09290 6.16464 6.19650 6.30551 6.46342 6.58096 6.63877 6.71692 6.74022 6.87157 6.94879 7.13777 7.17882 7.32684 7.42356 7.43099 7.86408 7.97220 8.22345 8.97913 9.66977 10.69614 Molecular weight = 368.15amu Principal moments of inertia in cm(-1) A = 0.014417 B = 0.001740 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.703818 B =16088.109532 C =17146.095059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.062 3.938 4 C 0.059 3.941 5 O -0.306 6.306 6 C 0.148 3.852 7 C -0.224 4.224 8 C -0.036 4.036 9 C -0.185 4.185 10 C 0.418 3.582 11 O -0.444 6.444 12 C -0.296 4.296 13 C 0.062 3.938 14 C -0.166 4.166 15 C -0.009 4.009 16 C -0.215 4.215 17 C -0.062 4.062 18 C -0.234 4.234 19 C 0.176 3.824 20 O -0.171 6.171 21 C -0.391 4.391 22 H 0.093 0.907 23 C 0.041 3.959 24 N -0.859 5.859 25 Si 0.941 3.059 26 H -0.266 1.266 27 H -0.276 1.276 28 H -0.276 1.276 29 C -0.028 4.028 30 C -0.164 4.164 31 H 0.042 0.958 32 H 0.088 0.912 33 H 0.041 0.959 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.130 0.870 39 H 0.135 0.865 40 H 0.124 0.876 41 H 0.129 0.871 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.106 0.894 45 H 0.128 0.872 46 H 0.270 0.730 47 H 0.140 0.860 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.271 11.434 0.418 25.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.014 4.014 4 C -0.016 4.016 5 O -0.219 6.219 6 C 0.103 3.897 7 C -0.243 4.243 8 C -0.054 4.054 9 C -0.186 4.186 10 C 0.301 3.699 11 O -0.323 6.323 12 C -0.315 4.315 13 C 0.043 3.957 14 C -0.167 4.167 15 C -0.027 4.027 16 C -0.234 4.234 17 C -0.080 4.080 18 C -0.253 4.253 19 C 0.121 3.879 20 O -0.073 6.073 21 C -0.467 4.467 22 H 0.111 0.889 23 C -0.164 4.164 24 N -0.494 5.494 25 Si 0.766 3.234 26 H -0.190 1.190 27 H -0.201 1.201 28 H -0.201 1.201 29 C -0.046 4.046 30 C -0.183 4.183 31 H 0.061 0.939 32 H 0.106 0.894 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.147 0.853 39 H 0.153 0.847 40 H 0.142 0.858 41 H 0.146 0.854 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.124 0.876 45 H 0.145 0.855 46 H 0.080 0.920 47 H 0.158 0.842 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -22.105 10.840 0.249 24.621 hybrid contribution 0.290 -0.397 0.205 0.532 sum -21.815 10.443 0.454 24.190 Atomic orbital electron populations 1.22772 0.80727 1.03111 0.99966 1.87984 1.19905 1.27017 1.95409 1.22583 0.91525 0.85869 1.01468 1.22878 0.93731 0.98395 0.86636 1.86083 1.20276 1.76536 1.39006 1.19253 0.82126 0.94075 0.94292 1.21174 0.94133 1.08757 1.00254 1.21258 0.94509 0.93524 0.96139 1.20720 0.96312 1.05398 0.96215 1.19045 0.87393 0.77071 0.86434 1.90794 1.79536 1.33714 1.28293 1.22157 0.94378 1.13275 1.01717 1.22519 0.94724 0.83009 0.95431 1.17945 1.01288 1.04034 0.93434 1.20551 0.94523 0.96157 0.91487 1.20437 1.02830 1.03896 0.96267 1.20831 0.95335 0.94353 0.97503 1.21081 1.05969 1.05558 0.92705 1.19389 0.89877 0.90799 0.87840 1.83844 1.52730 1.41409 1.29362 1.21411 1.20497 1.08402 0.96435 0.88917 1.25292 0.98371 0.98081 0.94652 1.70008 1.41692 1.37274 1.00413 0.85644 0.79193 0.79687 0.78914 1.19038 1.20114 1.20119 1.21215 0.91363 0.93646 0.98352 1.20383 0.95578 1.05158 0.97166 0.93887 0.89388 0.94034 0.91010 0.92017 0.90794 0.90187 0.85268 0.84689 0.85774 0.85369 0.87779 0.87687 0.87553 0.85470 0.92012 0.84212 0.84917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.38 -3.46 10.67 -40.09 -0.43 -3.89 16 3 C 0.06 0.40 6.32 37.16 0.23 0.63 16 4 C 0.06 0.44 5.12 37.16 0.19 0.63 16 5 O -0.31 -3.37 10.09 -23.74 -0.24 -3.61 16 6 C 0.15 1.75 6.70 -39.01 -0.26 1.49 16 7 C -0.22 -2.41 9.01 -39.49 -0.36 -2.77 16 8 C -0.04 -0.44 9.42 -39.22 -0.37 -0.81 16 9 C -0.19 -2.73 5.88 -104.90 -0.62 -3.35 16 10 C 0.42 7.40 6.09 -34.36 -0.21 7.19 16 11 O -0.44 -9.33 12.36 5.10 0.06 -9.27 16 12 C -0.30 -5.00 9.22 -39.28 -0.36 -5.37 16 13 C 0.06 1.21 9.34 -37.18 -0.35 0.86 16 14 C -0.17 -3.62 4.33 -104.89 -0.45 -4.07 16 15 C -0.01 -0.17 6.81 -39.11 -0.27 -0.44 16 16 C -0.22 -4.05 10.02 -39.61 -0.40 -4.45 16 17 C -0.06 -1.21 10.03 -39.50 -0.40 -1.60 16 18 C -0.23 -5.29 9.16 -39.45 -0.36 -5.65 16 19 C 0.18 4.35 6.67 -38.49 -0.26 4.09 16 20 O -0.17 -4.83 9.21 1.06 0.01 -4.82 16 21 C -0.39 -10.92 9.49 30.92 0.29 -10.63 16 22 H 0.09 2.42 5.21 -52.48 -0.27 2.15 16 23 C 0.04 1.11 5.49 -17.51 -0.10 1.02 16 24 N -0.86 -24.86 13.67 55.48 0.76 -24.10 16 25 Si 0.94 20.55 29.55 -169.99 -5.02 15.53 16 26 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 27 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 28 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 29 C -0.03 -0.38 9.59 -39.21 -0.38 -0.76 16 30 C -0.16 -2.04 9.97 -39.49 -0.39 -2.43 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.04 0.17 8.14 -51.93 -0.42 -0.26 16 34 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.54 7.66 -51.92 -0.40 0.14 16 37 H 0.08 0.42 7.64 -51.93 -0.40 0.02 16 38 H 0.13 1.02 6.28 -52.48 -0.33 0.69 16 39 H 0.14 1.36 6.21 -52.48 -0.33 1.03 16 40 H 0.12 1.65 6.26 -52.49 -0.33 1.32 16 41 H 0.13 2.42 8.06 -52.49 -0.42 1.99 16 42 H 0.10 1.84 7.40 -52.49 -0.39 1.45 16 43 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 44 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 45 H 0.13 2.84 5.64 -52.49 -0.30 2.54 16 46 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 47 H 0.14 1.95 7.64 -52.49 -0.40 1.55 16 48 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 407.74 15.07 6.14 6.14 Total: -1.00 -34.25 407.74 -8.48 -42.73 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -6.08 Total: 6.40 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: -3.69 Total: -25.13 kcal Atomic # 7 Polarization: -24.86 SS G_CDS: 0.76 Total: -24.10 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.59 Total: -21.58 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.25 -8.48 -42.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096307364.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.008 kcal (2) G-P(sol) polarization free energy of solvation -34.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds