Wall clock time and date at job start Tue Mar 31 2020 06:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21276 * 119.99656 * 2 1 4 4 N 1.34781 * 119.99751 * 179.97438 * 2 1 3 5 5 C 1.39481 * 119.99867 * 185.48084 * 4 2 1 6 6 C 1.39165 * 119.90170 * 26.97927 * 5 4 2 7 7 C 1.37618 * 120.10169 * 180.02562 * 6 5 4 8 8 C 1.39994 * 119.89981 * 359.97438 * 7 6 5 9 9 C 1.46981 * 120.09884 * 179.97438 * 8 7 6 10 10 C 1.34986 * 120.00062 * 136.68909 * 9 8 7 11 11 C 1.46264 * 119.99892 * 348.44476 * 10 9 8 12 12 O 1.21719 * 119.99723 * 353.62524 * 11 10 9 13 13 N 1.34770 * 119.99791 * 173.35013 * 11 10 9 14 14 C 1.46503 * 119.99778 * 180.27447 * 13 11 10 15 15 C 1.50704 * 109.46668 * 90.00221 * 14 13 11 16 16 H 1.07995 * 120.00465 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99421 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00613 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99864 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46928 * 89.99949 * 19 17 15 21 21 H 1.48499 * 109.47232 * 210.00177 * 19 17 15 22 22 H 1.48506 * 109.47111 * 330.00320 * 19 17 15 23 23 C 1.46507 * 120.00184 * 0.27793 * 13 11 10 24 24 C 1.50692 * 109.47202 * 89.99965 * 23 13 11 25 25 C 1.34517 * 125.78977 * 89.99981 * 24 23 13 26 26 C 1.41383 * 106.84244 * 179.97438 * 25 24 23 27 27 C 1.34516 * 106.84110 * 0.02562 * 26 25 24 28 28 O 1.34298 * 125.79112 * 269.68927 * 24 23 13 29 29 C 1.39981 * 119.80229 * 0.25563 * 8 7 6 30 30 C 1.37631 * 119.89889 * 359.52978 * 29 8 7 31 31 H 1.08999 * 109.46910 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47337 * 300.00216 * 1 2 3 33 33 H 1.09003 * 109.46465 * 60.00233 * 1 2 3 34 34 H 0.97003 * 119.99709 * 5.48715 * 4 2 1 35 35 H 1.08003 * 119.95173 * 0.02562 * 6 5 4 36 36 H 1.08000 * 120.05279 * 180.02562 * 7 6 5 37 37 H 1.08001 * 120.00074 * 316.68979 * 9 8 7 38 38 H 1.08003 * 120.00422 * 168.44685 * 10 9 8 39 39 H 1.09000 * 109.46914 * 209.99846 * 14 13 11 40 40 H 1.08992 * 109.47292 * 330.00487 * 14 13 11 41 41 H 0.97005 * 120.00479 * 180.02562 * 18 17 15 42 42 H 1.09008 * 109.46756 * 210.00224 * 23 13 11 43 43 H 1.08997 * 109.47054 * 329.99906 * 23 13 11 44 44 H 1.07999 * 126.58328 * 359.96455 * 25 24 23 45 45 H 1.08000 * 126.58130 * 179.97438 * 26 25 24 46 46 H 1.07991 * 125.79434 * 180.02562 * 27 26 25 47 47 H 1.08001 * 120.05441 * 179.71988 * 29 8 7 48 48 H 1.08001 * 119.94647 * 180.21228 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.5710 -1.1700 0.1159 6 6 4.2150 -0.1234 0.7690 7 6 5.5863 -0.1216 0.8847 8 6 6.3335 -1.1751 0.3448 9 6 7.7983 -1.1774 0.4654 10 6 8.4466 -2.3145 0.7955 11 6 7.6936 -3.4720 1.2777 12 8 6.4993 -3.3748 1.4919 13 7 8.3210 -4.6475 1.4795 14 6 7.5656 -5.8085 1.9568 15 6 7.0352 -6.5821 0.7772 16 1 7.2399 -6.2427 -0.2274 17 6 6.2885 -7.7232 0.9806 18 7 6.0388 -8.1363 2.2039 19 14 5.6304 -8.6817 -0.4815 20 1 6.6257 -9.7050 -0.8910 21 1 4.3596 -9.3506 -0.1034 22 1 5.3829 -7.7516 -1.6123 23 6 9.7585 -4.7644 1.2218 24 6 10.5227 -4.4291 2.4765 25 6 10.8901 -5.3027 3.4310 26 6 11.5821 -4.5640 4.4181 27 6 11.5957 -3.2830 4.0080 28 8 10.9576 -3.2082 2.8285 29 6 5.6819 -2.2234 -0.3155 30 6 4.3097 -2.2191 -0.4227 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3632 0.5138 -0.8901 34 1 1.6992 -2.0054 -0.0794 35 1 3.6377 0.6888 1.1856 36 1 6.0852 0.6908 1.3920 37 1 8.3561 -0.2694 0.2899 38 1 9.5213 -2.3696 0.7036 39 1 8.2198 -6.4498 2.5474 40 1 6.7331 -5.4715 2.5742 41 1 5.5138 -8.9393 2.3470 42 1 9.9910 -5.7847 0.9164 43 1 10.0426 -4.0738 0.4278 44 1 10.6940 -6.3647 3.4416 45 1 12.0157 -4.9533 5.3274 46 1 12.0477 -2.4558 4.5351 47 1 6.2547 -3.0360 -0.7376 48 1 3.8059 -3.0292 -0.9289 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096315739.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:39 Heat of formation + Delta-G solvation = -9.759081 kcal Electronic energy + Delta-G solvation = -32790.598608 eV Core-core repulsion = 28391.780657 eV Total energy + Delta-G solvation = -4398.817951 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 368.157 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.41547 -41.58818 -40.82160 -39.26344 -36.97746 -36.03476 -34.88691 -34.06707 -33.81259 -31.88440 -31.53315 -31.32092 -29.73728 -28.63280 -26.76550 -25.72062 -24.31636 -23.50899 -22.60153 -22.26535 -21.62678 -21.26168 -19.56104 -18.86578 -18.72409 -18.43242 -17.99190 -17.86202 -17.28319 -16.75647 -16.60516 -16.32653 -16.03992 -15.83773 -15.46388 -15.28352 -15.03853 -14.71742 -14.52648 -14.41533 -14.11293 -14.03332 -13.82127 -13.72169 -13.67871 -13.52955 -13.32297 -13.25021 -13.03669 -12.96807 -12.73050 -12.64791 -12.47703 -12.23582 -12.20246 -11.72462 -11.56686 -10.86710 -10.80814 -10.61953 -10.52928 -10.42062 -9.80032 -9.48327 -9.33159 -8.60978 -8.19499 -6.33899 -0.22097 0.58199 0.77617 0.85936 1.38633 1.40143 1.50728 1.61461 1.71422 2.10305 2.12388 2.34175 2.56595 2.59141 2.97356 3.10721 3.74148 3.77831 3.85422 3.90816 4.01828 4.06209 4.13501 4.18470 4.37263 4.41027 4.44265 4.50227 4.61370 4.62615 4.63448 4.73705 4.92819 4.96612 5.02986 5.05811 5.10519 5.13632 5.22185 5.23721 5.28211 5.39350 5.45797 5.56196 5.57381 5.64189 5.75317 5.85382 6.08296 6.12494 6.25290 6.42789 6.71992 6.78081 7.06772 7.31755 7.51870 8.87786 Molecular weight = 368.16amu Principal moments of inertia in cm(-1) A = 0.007362 B = 0.003221 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3802.234916 B = 8691.463856 C =11734.953361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.502 3.498 3 O -0.572 6.572 4 N -0.663 5.663 5 C 0.144 3.856 6 C -0.160 4.160 7 C -0.085 4.085 8 C -0.099 4.099 9 C -0.014 4.014 10 C -0.215 4.215 11 C 0.523 3.477 12 O -0.565 6.565 13 N -0.595 5.595 14 C 0.270 3.730 15 C -0.535 4.535 16 H 0.058 0.942 17 C 0.011 3.989 18 N -0.929 5.929 19 Si 0.964 3.036 20 H -0.266 1.266 21 H -0.284 1.284 22 H -0.270 1.270 23 C 0.190 3.810 24 C -0.042 4.042 25 C -0.215 4.215 26 C -0.232 4.232 27 C -0.034 4.034 28 O -0.179 6.179 29 C -0.023 4.023 30 C -0.172 4.172 31 H 0.104 0.896 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.425 0.575 35 H 0.133 0.867 36 H 0.147 0.853 37 H 0.177 0.823 38 H 0.158 0.842 39 H 0.017 0.983 40 H -0.006 1.006 41 H 0.265 0.735 42 H 0.112 0.888 43 H 0.118 0.882 44 H 0.138 0.862 45 H 0.166 0.834 46 H 0.243 0.757 47 H 0.101 0.899 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.324 14.370 -3.276 14.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.293 3.707 3 O -0.451 6.451 4 N -0.308 5.308 5 C 0.049 3.951 6 C -0.180 4.180 7 C -0.103 4.103 8 C -0.100 4.100 9 C -0.033 4.033 10 C -0.236 4.236 11 C 0.315 3.685 12 O -0.446 6.446 13 N -0.325 5.325 14 C 0.149 3.851 15 C -0.574 4.574 16 H 0.076 0.924 17 C -0.188 4.188 18 N -0.569 5.569 19 Si 0.789 3.211 20 H -0.191 1.191 21 H -0.209 1.209 22 H -0.194 1.194 23 C 0.067 3.933 24 C -0.094 4.094 25 C -0.235 4.235 26 C -0.251 4.251 27 C -0.101 4.101 28 O -0.075 6.075 29 C -0.042 4.042 30 C -0.193 4.193 31 H 0.123 0.877 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.263 0.737 35 H 0.151 0.849 36 H 0.165 0.835 37 H 0.194 0.806 38 H 0.175 0.825 39 H 0.035 0.965 40 H 0.012 0.988 41 H 0.074 0.926 42 H 0.130 0.870 43 H 0.136 0.864 44 H 0.156 0.844 45 H 0.183 0.817 46 H 0.259 0.741 47 H 0.119 0.881 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.885 15.242 -3.232 15.694 hybrid contribution -0.573 -1.946 0.068 2.030 sum 1.312 13.296 -3.163 13.730 Atomic orbital electron populations 1.21909 0.86573 1.06744 1.06629 1.21957 0.92771 0.82193 0.73759 1.90676 1.71675 1.32738 1.50030 1.43708 1.04711 1.11029 1.71334 1.17932 0.83796 0.96254 0.97111 1.21117 0.95230 0.99794 1.01830 1.21293 0.93226 0.97623 0.98161 1.19108 0.94260 0.95324 1.01329 1.22686 0.91780 0.97870 0.90992 1.23184 1.01243 0.93108 1.06047 1.19103 0.87229 0.83727 0.78400 1.90828 1.16446 1.84118 1.53188 1.48222 1.08355 1.10965 1.64987 1.18648 0.90227 0.82122 0.94119 1.21659 1.33463 1.09007 0.93230 0.92397 1.25800 0.96027 0.98346 0.98600 1.70070 1.40193 1.24656 1.21989 0.85464 0.77950 0.78594 0.79098 1.19126 1.20937 1.19411 1.20056 0.77848 1.04572 0.90825 1.23058 1.02819 0.82677 1.00797 1.21893 1.04261 1.01174 0.96171 1.22132 1.06244 0.94182 1.02518 1.24826 0.99603 1.00041 0.85674 1.83990 1.57200 1.31479 1.34837 1.20876 0.93951 0.94331 0.95004 1.20766 0.94336 0.99727 1.04444 0.87687 0.87273 0.87091 0.73698 0.84907 0.83543 0.80558 0.82458 0.96510 0.98796 0.92579 0.87005 0.86388 0.84438 0.81679 0.74093 0.88073 0.85479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 10.39 71.24 0.74 -1.10 16 2 C 0.50 11.69 7.72 87.66 0.68 12.37 16 3 O -0.57 -18.17 14.36 -3.02 -0.04 -18.21 16 4 N -0.66 -16.25 5.34 -303.41 -1.62 -17.87 16 5 C 0.14 4.69 6.40 38.37 0.25 4.93 16 6 C -0.16 -5.31 8.67 22.35 0.19 -5.11 16 7 C -0.08 -2.63 9.78 22.55 0.22 -2.41 16 8 C -0.10 -3.29 4.53 -20.14 -0.09 -3.38 16 9 C -0.01 -0.38 9.80 23.81 0.23 -0.14 16 10 C -0.22 -6.53 9.03 23.61 0.21 -6.31 16 11 C 0.52 21.96 6.65 86.33 0.57 22.53 16 12 O -0.56 -28.19 11.75 -4.41 -0.05 -28.24 16 13 N -0.60 -25.39 2.44 -835.70 -2.04 -27.43 16 14 C 0.27 14.46 5.16 85.63 0.44 14.90 16 15 C -0.54 -29.91 9.39 25.60 0.24 -29.67 16 16 H 0.06 3.17 7.81 -2.91 -0.02 3.14 16 17 C 0.01 0.63 5.46 84.65 0.46 1.09 16 18 N -0.93 -55.58 13.29 21.45 0.28 -55.29 16 19 Si 0.96 43.75 29.54 68.60 2.03 45.78 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 21 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 23 C 0.19 6.15 5.61 85.63 0.48 6.63 16 24 C -0.04 -1.33 6.90 24.83 0.17 -1.16 16 25 C -0.21 -6.83 10.81 22.19 0.24 -6.59 16 26 C -0.23 -5.93 10.91 22.19 0.24 -5.69 16 27 C -0.03 -0.76 12.09 66.97 0.81 0.05 16 28 O -0.18 -4.95 10.56 -2.52 -0.03 -4.97 16 29 C -0.02 -0.84 6.60 22.55 0.15 -0.69 16 30 C -0.17 -6.03 9.92 22.35 0.22 -5.81 16 31 H 0.10 0.67 7.92 -2.39 -0.02 0.65 16 32 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.42 7.71 8.63 -92.71 -0.80 6.91 16 35 H 0.13 4.45 5.92 -2.91 -0.02 4.43 16 36 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 37 H 0.18 3.03 8.06 -2.91 -0.02 3.01 16 38 H 0.16 3.76 6.23 -2.91 -0.02 3.74 16 39 H 0.02 0.93 8.07 -2.39 -0.02 0.91 16 40 H -0.01 -0.38 7.42 -2.39 -0.02 -0.40 16 41 H 0.27 14.93 8.31 -92.70 -0.77 14.16 16 42 H 0.11 3.61 8.07 -2.38 -0.02 3.59 16 43 H 0.12 2.99 6.18 -2.39 -0.01 2.97 16 44 H 0.14 4.55 8.06 -2.91 -0.02 4.53 16 45 H 0.17 3.35 8.06 -2.91 -0.02 3.33 16 46 H 0.24 2.90 8.06 -2.92 -0.02 2.87 16 47 H 0.10 4.07 7.03 -2.91 -0.02 4.05 16 48 H 0.13 4.08 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -83.31 410.63 5.20 -78.11 By element: Atomic # 1 Polarization: 33.49 SS G_CDS: 0.20 Total: 33.70 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: 6.46 Total: -5.56 kcal Atomic # 7 Polarization: -97.22 SS G_CDS: -3.37 Total: -100.59 kcal Atomic # 8 Polarization: -51.31 SS G_CDS: -0.12 Total: -51.43 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -83.31 5.20 -78.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096315739.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.351 kcal (2) G-P(sol) polarization free energy of solvation -83.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds