Wall clock time and date at job start Tue Mar 31 2020 07:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00310 * 2 1 4 4 C 1.52993 * 109.47410 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47436 * 184.81155 * 4 3 2 6 6 H 1.08995 * 109.47273 * 305.35026 * 5 4 3 7 7 C 1.53004 * 109.47517 * 185.34422 * 5 4 3 8 8 C 1.50699 * 109.46594 * 65.00059 * 7 5 4 9 9 C 1.38264 * 119.99696 * 90.00389 * 8 7 5 10 10 C 1.38217 * 120.02505 * 179.97438 * 9 8 7 11 11 C 1.38243 * 120.00750 * 0.02562 * 10 9 8 12 12 C 1.38308 * 119.99083 * 359.97438 * 11 10 9 13 13 Br 1.89102 * 120.01042 * 179.72264 * 12 11 10 14 14 C 1.38201 * 119.99732 * 269.99890 * 8 7 5 15 15 C 1.50705 * 109.46960 * 65.34684 * 5 4 3 16 16 O 1.21289 * 120.00177 * 23.64274 * 15 5 4 17 17 N 1.34774 * 119.99658 * 203.64361 * 15 5 4 18 18 C 1.46497 * 120.00556 * 5.36531 * 17 15 5 19 19 C 1.37101 * 119.99690 * 185.36673 * 17 15 5 20 20 H 1.08003 * 119.99871 * 7.04185 * 19 17 15 21 21 C 1.38952 * 120.00021 * 187.04972 * 19 17 15 22 22 N 1.31406 * 119.99852 * 7.08507 * 21 19 17 23 23 Si 1.86796 * 119.99941 * 187.08662 * 21 19 17 24 24 H 1.48504 * 109.47242 * 60.00177 * 23 21 19 25 25 H 1.48500 * 109.47174 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47326 * 299.99629 * 23 21 19 27 27 H 1.09003 * 109.47112 * 300.00141 * 1 2 3 28 28 H 1.09001 * 109.47239 * 59.99585 * 1 2 3 29 29 H 1.09000 * 109.47379 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47331 * 59.99726 * 3 2 1 31 31 H 1.09005 * 109.47043 * 300.00097 * 3 2 1 32 32 H 1.08997 * 109.47468 * 64.81109 * 4 3 2 33 33 H 1.09005 * 109.47151 * 304.80991 * 4 3 2 34 34 H 1.08998 * 109.47147 * 305.00570 * 7 5 4 35 35 H 1.08994 * 109.46933 * 185.00037 * 7 5 4 36 36 H 1.08000 * 119.98413 * 359.97089 * 9 8 7 37 37 H 1.07994 * 120.00148 * 180.02562 * 10 9 8 38 38 H 1.08005 * 120.00651 * 180.02562 * 11 10 9 39 39 H 1.08004 * 120.00080 * 0.02771 * 14 8 7 40 40 H 1.09000 * 109.46950 * 355.05630 * 18 17 15 41 41 H 1.08994 * 109.47162 * 115.05926 * 18 17 15 42 42 H 1.08997 * 109.46911 * 235.06135 * 18 17 15 43 43 H 0.97008 * 120.00149 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1575 2.5772 0.1203 6 1 3.7672 3.2193 -0.6692 7 6 5.6779 2.4702 -0.0140 8 6 6.0273 1.9966 -1.4013 9 6 6.2344 2.9153 -2.4136 10 6 6.5555 2.4816 -3.6861 11 6 6.6692 1.1288 -3.9473 12 6 6.4621 0.2094 -2.9350 13 35 6.6098 -1.6414 -3.2936 14 6 6.1409 0.6441 -1.6615 15 6 3.8122 3.1666 1.4637 16 8 3.5291 2.4379 2.3910 17 7 3.8180 4.5034 1.6346 18 6 4.0442 5.3875 0.4885 19 6 3.6123 5.0360 2.8810 20 1 3.5591 4.3877 3.7432 21 6 3.4721 6.4098 3.0351 22 7 3.3969 7.1853 1.9769 23 14 3.3905 7.1543 4.7463 24 1 4.6391 6.8361 5.4847 25 1 3.2417 8.6279 4.6385 26 1 2.2265 6.5909 5.4763 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.6887 1.8464 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.8628 0.7201 -0.9308 33 1 3.8517 0.5709 0.8429 34 1 6.0582 1.7590 0.7192 35 1 6.1276 3.4476 0.1604 36 1 6.1452 3.9721 -2.2100 37 1 6.7176 3.1995 -4.4764 38 1 6.9205 0.7900 -4.9416 39 1 5.9787 -0.0735 -0.8708 40 1 4.2736 4.7884 -0.3927 41 1 3.1473 5.9783 0.3029 42 1 4.8800 6.0534 0.7028 43 1 3.2994 8.1445 2.0844 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096420719.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:48 Heat of formation + Delta-G solvation = -50.371915 kcal Electronic energy + Delta-G solvation = -25673.512281 eV Core-core repulsion = 21958.354027 eV Total energy + Delta-G solvation = -3715.158254 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 369.073 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.87150 -38.70295 -37.43373 -35.13031 -34.45148 -32.39039 -31.57405 -31.29501 -29.47569 -28.44003 -26.43180 -26.13137 -24.79700 -23.54207 -22.61702 -21.76691 -20.81381 -18.35092 -17.08079 -16.88600 -16.48189 -16.03678 -15.60463 -15.41118 -15.13979 -14.82968 -14.54949 -14.02251 -13.96091 -13.56364 -13.38979 -13.13793 -12.96121 -12.82817 -12.32088 -12.23019 -11.68990 -11.50782 -11.37872 -11.22222 -11.15682 -11.01311 -10.93584 -10.87250 -10.76617 -10.57975 -10.44550 -10.37275 -10.35805 -10.05151 -9.33827 -9.08017 -8.89528 -8.73722 -8.30059 -7.86546 -6.26890 -3.84714 1.03880 1.21199 1.53817 3.15140 3.21503 3.25583 3.51116 3.86606 4.02370 4.08761 4.61276 4.74550 4.87704 5.01630 5.09815 5.20528 5.26257 5.34903 5.37921 5.43380 5.51268 5.55717 5.57438 5.73188 5.78108 5.81070 5.87074 5.93802 6.00252 6.02599 6.12141 6.25506 6.27002 6.40438 6.50172 6.54250 6.67628 6.76781 6.98750 7.36230 7.45904 7.53559 8.03732 8.45861 9.16422 9.42087 9.95813 10.66891 Molecular weight = 369.07amu Principal moments of inertia in cm(-1) A = 0.012526 B = 0.002811 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.780758 B = 9956.957453 C =11358.212886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.393 6.393 3 C 0.063 3.937 4 C -0.097 4.097 5 C -0.090 4.090 6 H 0.085 0.915 7 C -0.070 4.070 8 C -0.063 4.063 9 C -0.100 4.100 10 C -0.113 4.113 11 C -0.102 4.102 12 C -0.088 4.088 13 Br -0.059 7.059 14 C -0.085 4.085 15 C 0.441 3.559 16 O -0.589 6.589 17 N -0.446 5.446 18 C 0.109 3.891 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.027 3.973 22 N -0.888 5.888 23 Si 0.930 3.070 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 H 0.041 0.959 28 H 0.036 0.964 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.039 0.961 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.134 0.866 40 H 0.026 0.974 41 H 0.079 0.921 42 H 0.058 0.942 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.285 -10.592 -14.745 18.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.312 6.312 3 C -0.013 4.013 4 C -0.135 4.135 5 C -0.112 4.112 6 H 0.103 0.897 7 C -0.107 4.107 8 C -0.064 4.064 9 C -0.119 4.119 10 C -0.132 4.132 11 C -0.121 4.121 12 C -0.167 4.167 13 Br 0.026 6.974 14 C -0.105 4.105 15 C 0.229 3.771 16 O -0.474 6.474 17 N -0.164 5.164 18 C -0.035 4.035 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.175 4.175 22 N -0.530 5.530 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.199 1.199 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.146 0.854 39 H 0.152 0.848 40 H 0.044 0.956 41 H 0.097 0.903 42 H 0.077 0.923 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.287 -11.554 -14.443 19.237 hybrid contribution -0.338 1.342 0.682 1.543 sum 4.949 -10.212 -13.761 17.836 Atomic orbital electron populations 1.22671 0.81719 1.02066 0.99886 1.87815 1.19175 1.28763 1.95455 1.22581 0.94287 0.84054 1.00371 1.21355 0.93021 0.96350 1.02762 1.21115 0.94930 0.97047 0.98110 0.89736 1.20572 0.95030 1.02901 0.92243 1.19989 0.97493 0.92528 0.96357 1.21296 0.97858 1.00226 0.92485 1.21133 0.99909 0.94989 0.97135 1.21048 1.00052 0.92779 0.98257 1.21743 1.08000 0.90202 0.96790 1.96697 1.97265 1.07731 1.95708 1.21105 0.98143 0.96019 0.95224 1.19745 0.85303 0.82658 0.89412 1.90524 1.54364 1.59388 1.43152 1.43717 1.60179 1.03950 1.08514 1.21854 1.03701 0.92383 0.85514 1.19761 1.46672 0.91063 0.85298 0.87941 1.25290 0.96721 0.96224 0.99254 1.70095 1.49524 1.05218 1.28121 0.85937 0.79090 0.77566 0.81754 1.19922 1.20936 1.19876 0.94072 0.94531 0.90112 0.91957 0.94288 0.91422 0.89998 0.90049 0.89783 0.85041 0.85228 0.85402 0.84807 0.95580 0.90268 0.92322 0.92341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 16 2 O -0.39 -6.76 10.70 -35.23 -0.38 -7.14 16 3 C 0.06 1.12 5.79 37.15 0.22 1.33 16 4 C -0.10 -1.65 4.46 -26.74 -0.12 -1.77 16 5 C -0.09 -1.57 1.33 -91.77 -0.12 -1.69 16 6 H 0.08 1.39 6.24 -51.93 -0.32 1.07 16 7 C -0.07 -1.04 4.67 -27.88 -0.13 -1.17 16 8 C -0.06 -0.80 4.72 -104.63 -0.49 -1.30 16 9 C -0.10 -1.14 9.70 -39.58 -0.38 -1.52 16 10 C -0.11 -1.13 10.05 -39.59 -0.40 -1.52 16 11 C -0.10 -1.06 9.79 -39.55 -0.39 -1.44 16 12 C -0.09 -1.03 6.22 -39.52 -0.25 -1.28 16 13 Br -0.06 -0.65 33.70 -68.01 -2.29 -2.94 16 14 C -0.09 -1.07 7.61 -39.56 -0.30 -1.37 16 15 C 0.44 10.12 5.94 -10.98 -0.07 10.06 16 16 O -0.59 -15.61 14.87 5.55 0.08 -15.53 16 17 N -0.45 -10.91 3.03 -122.20 -0.37 -11.28 16 18 C 0.11 2.33 8.57 59.85 0.51 2.84 16 19 C -0.30 -8.13 9.54 -14.93 -0.14 -8.27 16 20 H 0.10 2.93 7.22 -52.48 -0.38 2.55 16 21 C 0.03 0.69 5.40 -17.47 -0.09 0.59 16 22 N -0.89 -22.67 9.62 55.50 0.53 -22.13 16 23 Si 0.93 20.45 29.56 -169.99 -5.02 15.43 16 24 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 26 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 1.27 6.76 -51.93 -0.35 0.92 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 1.03 5.89 -51.93 -0.31 0.72 16 33 H 0.08 1.53 7.68 -51.93 -0.40 1.13 16 34 H 0.08 1.25 8.09 -51.93 -0.42 0.83 16 35 H 0.08 1.28 7.82 -51.93 -0.41 0.87 16 36 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 37 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 39 H 0.13 1.67 7.98 -52.48 -0.42 1.25 16 40 H 0.03 0.45 5.13 -51.93 -0.27 0.19 16 41 H 0.08 1.84 6.74 -51.93 -0.35 1.49 16 42 H 0.06 1.31 7.42 -51.93 -0.39 0.92 16 43 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 LS Contribution 369.61 15.07 5.57 5.57 Total: -1.00 -29.85 369.61 -9.02 -38.87 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -6.10 Total: 4.10 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -1.04 Total: -4.96 kcal Atomic # 7 Polarization: -33.57 SS G_CDS: 0.16 Total: -33.41 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.29 Total: -22.66 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 35 Polarization: -0.65 SS G_CDS: -2.29 Total: -2.94 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.85 -9.02 -38.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096420719.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.499 kcal (2) G-P(sol) polarization free energy of solvation -29.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds