Wall clock time and date at job start Tue Mar 31 2020 05:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39637 * 120.14453 * 355.58516 * 3 2 1 5 5 C 1.38048 * 119.83101 * 180.02562 * 4 3 2 6 6 Cl 1.73602 * 119.93627 * 179.97438 * 5 4 3 7 7 C 1.38497 * 120.12335 * 0.02897 * 5 4 3 8 8 C 1.38315 * 120.29565 * 359.67393 * 7 5 4 9 9 C 1.37975 * 120.15966 * 0.60243 * 8 7 5 10 10 C 1.50705 * 120.06242 * 179.69680 * 9 8 7 11 11 S 1.81397 * 109.47332 * 269.72698 * 10 9 8 12 12 O 1.42098 * 110.54172 * 68.37240 * 11 10 9 13 13 O 1.42097 * 110.54166 * 291.62029 * 11 10 9 14 14 N 1.65605 * 104.45020 * 179.97438 * 11 10 9 15 15 C 1.46502 * 119.99873 * 269.99839 * 14 11 10 16 16 C 1.50697 * 109.47079 * 265.00173 * 15 14 11 17 17 H 1.08000 * 119.99936 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99754 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00085 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99983 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47264 * 59.99488 * 20 18 16 22 22 H 1.48496 * 109.47266 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47181 * 299.99816 * 20 18 16 24 24 C 1.46499 * 119.99782 * 89.99811 * 14 11 10 25 25 C 1.53000 * 109.46840 * 95.00317 * 24 14 11 26 26 C 1.53003 * 117.49371 * 243.61805 * 25 24 14 27 27 C 1.53001 * 117.49608 * 174.99880 * 25 24 14 28 28 H 1.07998 * 120.08326 * 0.02562 * 4 3 2 29 29 H 1.08006 * 119.84735 * 179.97438 * 7 5 4 30 30 H 1.07996 * 119.92134 * 180.31927 * 8 7 5 31 31 H 1.08996 * 109.47244 * 149.72169 * 10 9 8 32 32 H 1.09007 * 109.46837 * 29.72765 * 10 9 8 33 33 H 1.08998 * 109.47222 * 25.00345 * 15 14 11 34 34 H 1.09000 * 109.46517 * 144.99933 * 15 14 11 35 35 H 0.97003 * 120.00108 * 179.97438 * 19 18 16 36 36 H 1.09002 * 109.47391 * 334.99987 * 24 14 11 37 37 H 1.09001 * 109.46813 * 215.00043 * 24 14 11 38 38 H 1.08995 * 115.55630 * 29.32490 * 25 24 14 39 39 H 1.08998 * 117.50656 * 0.02562 * 26 25 24 40 40 H 1.09001 * 117.49674 * 145.02590 * 26 25 24 41 41 H 1.09003 * 117.49710 * 214.97494 * 27 25 24 42 42 H 1.08998 * 117.50185 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2697 -1.2030 0.0930 5 6 4.6502 -1.1948 0.0929 6 17 5.5254 -2.6895 0.2090 7 6 5.3382 0.0037 0.0015 8 6 4.6483 1.1985 -0.0969 9 6 3.2685 1.2047 -0.0923 10 6 2.5191 2.5083 -0.1928 11 16 2.2177 3.1625 1.4721 12 8 3.4379 3.5683 2.0768 13 8 1.2914 2.3417 2.1702 14 7 1.3980 4.5788 1.2174 15 6 2.1365 5.8339 1.0571 16 6 2.2205 6.5404 2.3855 17 1 1.7687 6.0989 3.2615 18 6 2.8734 7.7509 2.4824 19 7 3.4231 8.2887 1.4156 20 14 2.9770 8.6271 4.1289 21 1 3.6814 7.7603 5.1075 22 1 3.7256 9.8992 3.9664 23 1 1.6067 8.9181 4.6219 24 6 -0.0655 4.5765 1.1524 25 6 -0.6376 4.9185 2.5296 26 6 -1.4720 3.8467 3.2339 27 6 -2.1546 5.0823 2.6436 28 1 2.7339 -2.1379 0.1647 29 1 6.4182 0.0050 0.0023 30 1 5.1909 2.1292 -0.1731 31 1 1.5666 2.3420 -0.6958 32 1 3.1108 3.2245 -0.7630 33 1 3.1421 5.6201 0.6950 34 1 1.6194 6.4704 0.3390 35 1 3.8821 9.1406 1.4836 36 1 -0.4143 3.5894 0.8490 37 1 -0.3981 5.3184 0.4264 38 1 -0.0140 5.5606 3.1516 39 1 -1.6131 2.8978 2.7164 40 1 -1.3974 3.7835 4.3195 41 1 -2.5289 5.8319 3.3408 42 1 -2.7449 4.9468 1.7374 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097046161.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:09 Heat of formation + Delta-G solvation = 8.881012 kcal Electronic energy + Delta-G solvation = -28810.290137 eV Core-core repulsion = 24716.767407 eV Total energy + Delta-G solvation = -4093.522730 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 368.075 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.17045 -37.51165 -37.15409 -36.62271 -36.40152 -35.39399 -34.77653 -33.22777 -32.40708 -31.87190 -27.86737 -27.77723 -25.52274 -24.39314 -22.59164 -22.28250 -21.84625 -20.21090 -19.32919 -18.33634 -17.22430 -16.82560 -16.65016 -16.44480 -15.90997 -15.53174 -15.22697 -14.78390 -14.52970 -14.38014 -14.07810 -13.83593 -13.58548 -13.43825 -13.31771 -13.21023 -12.94125 -12.56887 -12.39793 -12.17294 -11.98020 -11.85222 -11.82906 -11.58977 -11.52717 -11.34602 -11.24215 -11.10431 -11.09090 -10.84579 -10.79239 -10.58020 -10.16948 -9.83671 -9.56656 -9.50545 -9.37997 -9.02139 -8.45787 -8.14419 -6.09014 -4.11529 0.10701 0.48858 0.86583 1.61162 2.47399 2.57122 3.14222 3.32618 3.36043 3.40083 3.41144 3.53380 3.97799 4.14202 4.29987 4.38642 4.40230 4.44245 4.59646 4.81720 4.89928 5.10419 5.21248 5.23713 5.31597 5.34158 5.36785 5.49321 5.53431 5.65533 5.67295 5.82350 5.90625 6.01299 6.12310 6.15018 6.32537 6.44655 6.55294 6.92237 7.12590 7.25758 7.30863 7.50550 7.89646 8.16935 8.89625 9.53024 10.99853 Molecular weight = 368.07amu Principal moments of inertia in cm(-1) A = 0.011572 B = 0.003206 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.028030 B = 8730.995106 C =10373.874854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C 0.243 3.757 3 C -0.005 4.005 4 C -0.061 4.061 5 C -0.037 4.037 6 Cl -0.056 7.056 7 C -0.075 4.075 8 C -0.093 4.093 9 C -0.028 4.028 10 C -0.622 4.622 11 S 2.598 3.402 12 O -0.924 6.924 13 O -0.950 6.950 14 N -0.978 5.978 15 C 0.254 3.746 16 C -0.521 4.521 17 H 0.063 0.937 18 C 0.063 3.937 19 N -0.897 5.897 20 Si 0.893 3.107 21 H -0.274 1.274 22 H -0.286 1.286 23 H -0.276 1.276 24 C 0.167 3.833 25 C -0.160 4.160 26 C -0.175 4.175 27 C -0.185 4.185 28 H 0.149 0.851 29 H 0.150 0.850 30 H 0.157 0.843 31 H 0.135 0.865 32 H 0.154 0.846 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.264 0.736 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.127 0.873 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.236 -16.642 -6.705 17.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.059 5.059 2 C -0.073 4.073 3 C -0.009 4.009 4 C -0.083 4.083 5 C -0.064 4.064 6 Cl -0.027 7.027 7 C -0.095 4.095 8 C -0.112 4.112 9 C -0.032 4.032 10 C -0.744 4.744 11 S 2.687 3.313 12 O -0.914 6.914 13 O -0.940 6.940 14 N -0.817 5.817 15 C 0.133 3.867 16 C -0.560 4.560 17 H 0.081 0.919 18 C -0.139 4.139 19 N -0.536 5.536 20 Si 0.721 3.279 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.202 1.202 24 C 0.040 3.960 25 C -0.179 4.179 26 C -0.212 4.212 27 C -0.223 4.223 28 H 0.167 0.833 29 H 0.167 0.833 30 H 0.174 0.826 31 H 0.153 0.847 32 H 0.172 0.828 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.145 0.855 39 H 0.111 0.889 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.100 -16.956 -5.995 17.985 hybrid contribution 0.544 0.585 0.129 0.809 sum 0.444 -16.371 -5.866 17.396 Atomic orbital electron populations 1.81245 1.11468 1.05961 1.07185 1.25291 0.92328 0.94893 0.94748 1.15708 0.85031 0.93469 1.06693 1.21008 0.92205 0.97670 0.97376 1.20749 0.91954 0.88260 1.05471 1.98397 1.75806 1.32030 1.96478 1.21349 1.01490 0.90052 0.96582 1.21207 0.92320 0.99415 0.98255 1.19190 0.93879 0.91513 0.98637 1.30217 1.09325 1.04228 1.30612 1.05639 0.75108 0.74120 0.76469 1.93645 1.46347 1.80201 1.71172 1.93576 1.62787 1.69567 1.68057 1.57524 1.13590 1.22949 1.87656 1.19152 0.90768 0.78868 0.97941 1.21425 1.35151 1.04542 0.94932 0.91861 1.24901 0.95102 0.97183 0.96730 1.69893 1.36520 1.18774 1.28461 0.86630 0.78294 0.78813 0.84196 1.19973 1.21188 1.20176 1.20624 0.79380 1.00418 0.95549 1.23009 0.92880 1.02650 0.99394 1.22943 1.04770 0.93565 0.99973 1.22894 0.95643 1.00927 1.02840 0.83325 0.83267 0.82583 0.84653 0.82799 0.94406 0.94435 0.92651 0.91861 0.90370 0.85506 0.88931 0.89531 0.89254 0.89394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.38 -5.83 18.54 41.84 0.78 -5.06 16 2 C 0.24 3.27 13.68 -22.48 -0.31 2.96 16 3 C 0.00 -0.05 5.73 -106.94 -0.61 -0.67 16 4 C -0.06 -0.57 9.54 -39.13 -0.37 -0.94 16 5 C -0.04 -0.32 6.31 -39.56 -0.25 -0.57 16 6 Cl -0.06 -0.44 28.95 -51.86 -1.50 -1.94 16 7 C -0.08 -0.63 9.82 -39.46 -0.39 -1.02 16 8 C -0.09 -0.93 9.69 -39.65 -0.38 -1.31 16 9 C -0.03 -0.33 5.17 -104.20 -0.54 -0.87 16 10 C -0.62 -8.03 5.90 36.01 0.21 -7.81 16 11 S 2.60 47.38 5.30 -107.50 -0.57 46.81 16 12 O -0.92 -20.15 16.98 -57.54 -0.98 -21.13 16 13 O -0.95 -18.48 16.87 -57.54 -0.97 -19.45 16 14 N -0.98 -19.03 2.73 -115.66 -0.32 -19.34 16 15 C 0.25 5.92 5.03 -5.19 -0.03 5.90 16 16 C -0.52 -13.87 8.70 -34.44 -0.30 -14.17 16 17 H 0.06 1.70 6.16 -52.49 -0.32 1.38 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.90 -25.13 13.29 55.43 0.74 -24.39 16 20 Si 0.89 21.30 29.54 -169.99 -5.02 16.27 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 C 0.17 2.88 5.56 -4.04 -0.02 2.86 16 25 C -0.16 -2.89 5.90 -90.62 -0.53 -3.43 16 26 C -0.18 -2.87 10.18 -26.73 -0.27 -3.15 16 27 C -0.19 -2.78 10.25 -26.73 -0.27 -3.05 16 28 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 29 H 0.15 0.87 8.06 -52.48 -0.42 0.45 16 30 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.14 1.57 7.09 -51.93 -0.37 1.20 16 32 H 0.15 1.65 8.08 -51.92 -0.42 1.23 16 33 H 0.04 0.91 7.61 -51.93 -0.39 0.52 16 34 H 0.04 0.89 8.00 -51.93 -0.42 0.47 16 35 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.06 0.98 7.34 -51.93 -0.38 0.60 16 37 H 0.08 1.25 8.00 -51.93 -0.42 0.83 16 38 H 0.13 2.66 5.77 -51.93 -0.30 2.36 16 39 H 0.09 1.51 8.03 -51.93 -0.42 1.09 16 40 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 41 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 393.42 15.07 5.93 5.93 Total: -1.00 -32.39 393.42 -11.19 -43.58 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -5.11 Total: 2.38 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: -4.17 Total: -23.65 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: 1.20 Total: -48.79 kcal Atomic # 8 Polarization: -38.64 SS G_CDS: -1.95 Total: -40.59 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 47.38 SS G_CDS: -0.57 Total: 46.81 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.50 Total: -1.94 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.39 -11.19 -43.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097046161.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.457 kcal (2) G-P(sol) polarization free energy of solvation -32.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds