Wall clock time and date at job start Tue Mar 31 2020 05:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21315 * 120.00357 * 2 1 4 4 C 1.46653 * 120.00163 * 179.72767 * 2 1 3 5 5 C 1.40069 * 120.23714 * 354.37229 * 4 2 1 6 6 C 1.37698 * 119.89079 * 179.78752 * 5 4 2 7 7 Br 1.89103 * 119.81391 * 180.25604 * 6 5 4 8 8 C 1.38779 * 120.37111 * 0.50072 * 6 5 4 9 9 C 1.37924 * 120.48356 * 359.73522 * 8 6 5 10 10 C 1.38951 * 120.10114 * 0.02562 * 9 8 6 11 11 N 1.38741 * 120.18905 * 179.97438 * 10 9 8 12 12 C 1.46500 * 119.99676 * 5.46231 * 11 10 9 13 13 C 1.50698 * 109.47241 * 179.97438 * 12 11 10 14 14 O 1.21286 * 119.99904 * 0.02562 * 13 12 11 15 15 N 1.34778 * 120.00133 * 179.97438 * 13 12 11 16 16 C 1.46498 * 119.99859 * 0.02562 * 15 13 12 17 17 C 1.46496 * 119.99682 * 179.97438 * 15 13 12 18 18 C 1.50700 * 109.46979 * 90.00666 * 17 15 13 19 19 H 1.08002 * 119.99879 * 359.97438 * 18 17 15 20 20 C 1.37876 * 119.99876 * 179.97438 * 18 17 15 21 21 N 1.31519 * 119.99955 * 180.02562 * 20 18 17 22 22 Si 1.86794 * 120.00292 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47323 * 89.99755 * 22 20 18 24 24 H 1.48500 * 109.47418 * 209.99886 * 22 20 18 25 25 H 1.48500 * 109.47255 * 329.99768 * 22 20 18 26 26 H 1.08999 * 109.46914 * 270.27318 * 1 2 3 27 27 H 1.08994 * 109.47509 * 30.27824 * 1 2 3 28 28 H 1.09002 * 109.47457 * 150.27985 * 1 2 3 29 29 H 1.08003 * 120.05454 * 0.02562 * 5 4 2 30 30 H 1.07996 * 119.75510 * 179.71746 * 8 6 5 31 31 H 1.08000 * 119.94983 * 180.02562 * 9 8 6 32 32 H 0.96993 * 119.99894 * 185.46087 * 11 10 9 33 33 H 1.09001 * 109.47318 * 300.00269 * 12 11 10 34 34 H 1.09005 * 109.47131 * 59.99751 * 12 11 10 35 35 H 1.09004 * 109.47190 * 89.99602 * 16 15 13 36 36 H 1.08998 * 109.46976 * 209.99373 * 16 15 13 37 37 H 1.08999 * 109.47207 * 329.99287 * 16 15 13 38 38 H 1.09000 * 109.47097 * 210.00287 * 17 15 13 39 39 H 1.08998 * 109.47597 * 330.00238 * 17 15 13 40 40 H 0.97002 * 119.99943 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2402 -1.2700 0.0060 5 6 1.5500 -2.4825 0.1305 6 6 2.2453 -3.6710 0.1309 7 35 1.3106 -5.3070 0.2917 8 6 3.6286 -3.6747 0.0191 9 6 4.3242 -2.4896 -0.0994 10 6 3.6421 -1.2791 -0.1070 11 7 4.3401 -0.0858 -0.2255 12 6 5.7856 -0.1033 -0.4630 13 6 6.2971 1.3114 -0.5522 14 8 5.5298 2.2426 -0.4290 15 7 7.6074 1.5419 -0.7679 16 6 8.5343 0.4171 -0.9161 17 6 8.1045 2.9172 -0.8551 18 6 8.5048 3.3946 0.5170 19 1 8.3991 2.7393 1.3690 20 6 9.0060 4.6680 0.6848 21 7 9.3558 5.0845 1.8823 22 14 9.1882 5.8018 -0.7885 23 1 7.9394 6.5849 -0.9679 24 1 10.3257 6.7291 -0.5619 25 1 9.4445 4.9927 -2.0070 26 1 -0.3633 0.0049 1.0277 27 1 -0.3634 0.8874 -0.5181 28 1 -0.3634 -0.8925 -0.5095 29 1 0.4739 -2.4853 0.2221 30 1 4.1643 -4.6125 0.0251 31 1 5.4006 -2.5026 -0.1863 32 1 3.8709 0.7598 -0.1511 33 1 6.2827 -0.6186 0.3589 34 1 5.9940 -0.6243 -1.3975 35 1 8.5978 0.1347 -1.9670 36 1 9.5213 0.7101 -0.5583 37 1 8.1734 -0.4303 -0.3333 38 1 8.9694 2.9495 -1.5177 39 1 7.3200 3.5628 -1.2500 40 1 9.7081 5.9806 2.0004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097085455.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:38 Heat of formation + Delta-G solvation = -28.112726 kcal Electronic energy + Delta-G solvation = -24415.012364 eV Core-core repulsion = 20662.704909 eV Total energy + Delta-G solvation = -3752.307455 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 368.052 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.63914 -39.27932 -38.35150 -35.84024 -34.99507 -32.63820 -32.40742 -31.64372 -29.91395 -29.38331 -28.38595 -26.57313 -25.67597 -24.24671 -22.54950 -21.44312 -20.30491 -18.74068 -17.76313 -17.06934 -17.04070 -16.27175 -16.00332 -15.60273 -15.45009 -15.13547 -14.66619 -14.49741 -14.33980 -14.14795 -13.86170 -13.61481 -13.08621 -12.74658 -12.49436 -12.44293 -12.37006 -12.36486 -12.27368 -12.11298 -11.67396 -11.54247 -11.32747 -10.98914 -10.58063 -10.52317 -10.21560 -9.93857 -9.75462 -9.61820 -9.37511 -9.26962 -8.63782 -7.87330 -7.67507 -6.13522 -4.13254 0.48029 1.10782 1.48899 2.20292 3.05236 3.11013 3.26139 3.31848 3.34200 3.47569 3.79121 3.89706 4.35195 4.40995 4.65620 4.75922 4.89129 4.96502 5.10813 5.16885 5.18378 5.20013 5.20614 5.22909 5.45602 5.49822 5.61061 5.71326 5.72066 5.92150 5.94596 6.04201 6.27679 6.56546 6.83110 6.99756 7.17516 7.31008 7.53724 7.87474 8.06409 8.39149 8.72114 8.89144 9.45792 10.99726 Molecular weight = 368.05amu Principal moments of inertia in cm(-1) A = 0.019935 B = 0.002099 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.253370 B =13335.510585 C =14289.764527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.397 3.603 3 O -0.458 6.458 4 C -0.260 4.260 5 C 0.012 3.988 6 C -0.175 4.175 7 Br -0.062 7.062 8 C -0.006 4.006 9 C -0.212 4.212 10 C 0.296 3.704 11 N -0.697 5.697 12 C 0.090 3.910 13 C 0.499 3.501 14 O -0.527 6.527 15 N -0.592 5.592 16 C 0.079 3.921 17 C 0.215 3.785 18 C -0.532 4.532 19 H 0.074 0.926 20 C 0.073 3.927 21 N -0.896 5.896 22 Si 0.877 3.123 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.266 1.266 26 H 0.097 0.903 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.139 0.861 30 H 0.135 0.865 31 H 0.137 0.863 32 H 0.431 0.569 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.049 0.951 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.033 0.967 39 H 0.038 0.962 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.002 -24.384 -6.000 29.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.278 3.722 3 O -0.334 6.334 4 C -0.268 4.268 5 C -0.009 4.009 6 C -0.256 4.256 7 Br 0.023 6.977 8 C -0.027 4.027 9 C -0.235 4.235 10 C 0.180 3.820 11 N -0.334 5.334 12 C -0.038 4.038 13 C 0.284 3.716 14 O -0.403 6.403 15 N -0.324 5.324 16 C -0.065 4.065 17 C 0.095 3.905 18 C -0.570 4.570 19 H 0.092 0.908 20 C -0.130 4.130 21 N -0.534 5.534 22 Si 0.704 3.296 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.191 1.191 26 H 0.116 0.884 27 H 0.107 0.893 28 H 0.104 0.896 29 H 0.157 0.843 30 H 0.152 0.848 31 H 0.155 0.845 32 H 0.284 0.716 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.068 0.932 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.133 -23.624 -5.818 29.193 hybrid contribution 0.397 1.072 -0.536 1.263 sum -15.736 -22.551 -6.354 28.223 Atomic orbital electron populations 1.22181 0.93521 1.04875 1.04786 1.22225 0.91870 0.87097 0.71043 1.90362 1.70609 1.34275 1.38164 1.19817 0.91975 0.95107 1.19861 1.21094 0.99674 0.89412 0.90694 1.21237 0.94774 0.91300 1.18319 1.96663 1.75829 1.27650 1.97592 1.21008 0.91880 0.98338 0.91491 1.20732 1.00418 0.90364 1.12026 1.18143 0.89950 0.86976 0.86882 1.45666 1.07124 1.08474 1.72129 1.21371 0.82511 0.97149 1.02776 1.20095 0.83138 0.90047 0.78285 1.90728 1.55448 1.44664 1.49504 1.47782 1.06042 1.08897 1.69716 1.21744 0.95532 0.88939 1.00271 1.19724 0.94630 0.77793 0.98340 1.21289 1.42736 1.00053 0.92955 0.90753 1.24861 0.94699 0.97580 0.95846 1.69895 1.43217 1.18661 1.21593 0.86837 0.78265 0.81284 0.83215 1.19851 1.20979 1.19065 0.88430 0.89264 0.89646 0.84319 0.84763 0.84503 0.71636 0.88827 0.89054 0.93221 0.90085 0.92094 0.94895 0.94424 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.53 9.64 36.00 0.35 -1.19 16 2 C 0.40 4.92 7.20 -30.92 -0.22 4.70 16 3 O -0.46 -7.77 14.39 5.53 0.08 -7.69 16 4 C -0.26 -3.03 5.88 -104.91 -0.62 -3.65 16 5 C 0.01 0.11 9.04 -39.09 -0.35 -0.25 16 6 C -0.18 -1.60 6.21 -39.58 -0.25 -1.84 16 7 Br -0.06 -0.50 33.68 -68.01 -2.29 -2.79 16 8 C -0.01 -0.06 9.76 -39.50 -0.39 -0.44 16 9 C -0.21 -2.13 9.30 -39.43 -0.37 -2.50 16 10 C 0.30 3.77 6.66 -83.56 -0.56 3.22 16 11 N -0.70 -10.80 5.55 -59.57 -0.33 -11.13 16 12 C 0.09 1.27 3.97 -5.19 -0.02 1.25 16 13 C 0.50 9.95 7.74 -10.99 -0.09 9.86 16 14 O -0.53 -13.06 15.25 5.55 0.08 -12.98 16 15 N -0.59 -11.71 2.86 -182.96 -0.52 -12.24 16 16 C 0.08 1.09 10.24 59.85 0.61 1.71 16 17 C 0.22 5.19 4.23 -5.20 -0.02 5.17 16 18 C -0.53 -15.18 9.94 -34.44 -0.34 -15.52 16 19 H 0.07 2.33 8.06 -52.49 -0.42 1.90 16 20 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 21 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 22 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 16 23 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 26 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.08 0.46 6.70 -51.93 -0.35 0.11 16 29 H 0.14 0.92 6.52 -52.48 -0.34 0.58 16 30 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 31 H 0.14 1.12 6.72 -52.49 -0.35 0.77 16 32 H 0.43 8.01 3.96 -40.95 -0.16 7.85 16 33 H 0.09 1.13 6.99 -51.93 -0.36 0.77 16 34 H 0.09 1.01 8.09 -51.93 -0.42 0.59 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.08 1.18 8.07 -51.93 -0.42 0.76 16 37 H 0.06 0.66 6.44 -51.93 -0.33 0.32 16 38 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 39 H 0.04 0.98 6.85 -51.93 -0.36 0.62 16 40 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 355.50 15.07 5.36 5.36 Total: -1.00 -35.79 355.50 -8.62 -44.41 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -4.75 Total: 4.51 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -2.36 Total: 2.54 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: -0.08 Total: -50.18 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: 0.16 Total: -20.67 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Atomic # 35 Polarization: -0.50 SS G_CDS: -2.29 Total: -2.79 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.79 -8.62 -44.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097085455.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.302 kcal (2) G-P(sol) polarization free energy of solvation -35.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds